Issue navigation
Volume 35, Issue 1, January 2019
ORIGINAL PAPERS
GENOME ANALYSIS
GWASinlps: non-local prior based iterative SNP selection tool for genome-wide association studies
Nilotpal Sanyal and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 1–11, https://doi.org/10.1093/bioinformatics/bty472
SEQUENCE ANALYSIS
The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis
Nelson Gil and Andras Fiser
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 12–19, https://doi.org/10.1093/bioinformatics/bty523
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
Ehsan Haghshenas and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 20–27, https://doi.org/10.1093/bioinformatics/bty544
GENE EXPRESSION
A descriptive marker gene approach to single-cell pseudotime inference
Kieran R Campbell and Christopher Yau
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 28–35, https://doi.org/10.1093/bioinformatics/bty498
Unraveling the role of low-frequency mutated genes in breast cancer
Eleonora Lusito and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 36–46, https://doi.org/10.1093/bioinformatics/bty520
GrandPrix: scaling up the Bayesian GPLVM for single-cell data
Sumon Ahmed and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 47–54, https://doi.org/10.1093/bioinformatics/bty533
Differential coexpression in human tissues and the confounding effect of mean expression levels
Marjan Farahbod and Paul Pavlidis
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 55–61, https://doi.org/10.1093/bioinformatics/bty538
Exploring drivers of gene expression in the Cancer Genome Atlas
Andrea Rau and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 62–68, https://doi.org/10.1093/bioinformatics/bty551
GENETICS AND POPULATION ANALYSIS
Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees
Christian X Weichenberger and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 69–76, https://doi.org/10.1093/bioinformatics/bty541
SYSTEMS BIOLOGY
Graph-guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus
Lei Han and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 77–87, https://doi.org/10.1093/bioinformatics/bty457
A network-based zoning for parallel whole-cell simulation
Barnali Das and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 88–94, https://doi.org/10.1093/bioinformatics/bty530
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
Mohammad Sajjad Ghaemi and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 95–103, https://doi.org/10.1093/bioinformatics/bty537
NeoDTI: neural integration of neighbor information from a heterogeneous network for discovering new drug–target interactions
Fangping Wan and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 104–111, https://doi.org/10.1093/bioinformatics/bty543
DATA AND TEXT MINING
Tightly integrated genomic and epigenomic data mining using tensor decomposition
Jianwen Fang
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 112–118, https://doi.org/10.1093/bioinformatics/bty513
APPLICATIONS NOTES
GENOME ANALYSIS
htsget: a protocol for securely streaming genomic data
Jerome Kelleher and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 119–121, https://doi.org/10.1093/bioinformatics/bty492
Seave: a comprehensive web platform for storing and interrogating human genomic variation
Velimir Gayevskiy and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 122–125, https://doi.org/10.1093/bioinformatics/bty540
ShinyCNV: a Shiny/R application to view and annotate DNA copy number variations
Zhaohui Gu and Charles G Mullighan
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 126–129, https://doi.org/10.1093/bioinformatics/bty546
Matt: Unix tools for alternative splicing analysis
André Gohr and Manuel Irimia
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 130–132, https://doi.org/10.1093/bioinformatics/bty606
Kmer-db: instant evolutionary distance estimation
Sebastian Deorowicz and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 133–136, https://doi.org/10.1093/bioinformatics/bty610
Reproducible and replicable comparisons using SummarizedBenchmark
Patrick K Kimes and Alejandro Reyes
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 137–139, https://doi.org/10.1093/bioinformatics/bty627
WAVES: a web application for versatile enhanced bioinformatic services
Marc Chakiachvili and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 140–142, https://doi.org/10.1093/bioinformatics/bty639
SEQUENCE ANALYSIS
Broom: application for non-redundant storage of high throughput sequencing data
Levent Albayrak and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 143–145, https://doi.org/10.1093/bioinformatics/bty580
Cryfa: a secure encryption tool for genomic data
Morteza Hosseini and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 146–148, https://doi.org/10.1093/bioinformatics/bty645
PHYLOGENETICS
SonicParanoid: fast, accurate and easy orthology inference
Salvatore Cosentino and Wataru Iwasaki
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 149–151, https://doi.org/10.1093/bioinformatics/bty631
STRUCTURAL BIOINFORMATICS
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs
Maciej Antczak and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 152–155, https://doi.org/10.1093/bioinformatics/bty609
GENE EXPRESSION
GECO: gene expression correlation analysis after genetic algorithm-driven deconvolution
Jamil Najafov and Ayaz Najafov
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 156–159, https://doi.org/10.1093/bioinformatics/bty623
GENETICS AND POPULATION ANALYSIS
GIGSEA: genotype imputed gene set enrichment analysis using GWAS summary level data
Shijia Zhu and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 160–163, https://doi.org/10.1093/bioinformatics/bty529
emeraLD: rapid linkage disequilibrium estimation with massive datasets
Corbin Quick and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 164–166, https://doi.org/10.1093/bioinformatics/bty547
SYSTEMS BIOLOGY
pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis
Pierre Salvy and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 167–169, https://doi.org/10.1093/bioinformatics/bty499
DATA AND TEXT MINING
ACDtool: a web-server for the generic analysis of large data sets of counts
Jean-Michel Claverie and Thi Ngan Ta
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 170–171, https://doi.org/10.1093/bioinformatics/bty640
DATABASES AND ONTOLOGIES
BrainEXP: a database featuring with spatiotemporal expression variations and co-expression organizations in human brains
Chuan Jiao and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 172–174, https://doi.org/10.1093/bioinformatics/bty576
PepBDB: a comprehensive structural database of biological peptide–protein interactions
Zeyu Wen and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 175–177, https://doi.org/10.1093/bioinformatics/bty579
BIOIMAGE INFORMATICS
SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
Paolo Inglese and others
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 178–180, https://doi.org/10.1093/bioinformatics/bty622
Advertisement
Advertisement