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Authors: Daisuke Kihara
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Journal Article
Enhancing cryo-EM maps with 3D deep generative networks for assisting protein structure modeling
Sai Raghavendra Maddhuri Venkata Subramaniya and others
Bioinformatics, Volume 39, Issue 8, August 2023, btad494, https://doi.org/10.1093/bioinformatics/btad494
Published: 07 August 2023
Journal Article
Protein contact map refinement for improving structure prediction using generative adversarial networks
Sai Raghavendra Maddhuri Venkata Subramaniya and others
Bioinformatics, Volume 37, Issue 19, October 2021, Pages 3168–3174, https://doi.org/10.1093/bioinformatics/btab220
Published: 31 March 2021
Journal Article
Protein docking model evaluation by 3D deep convolutional neural networks
Xiao Wang and others
Bioinformatics, Volume 36, Issue 7, April 2020, Pages 2113–2118, https://doi.org/10.1093/bioinformatics/btz870
Published: 20 November 2019
Journal Article
Prediction of protein group function by iterative classification on functional relevance network
Ishita K Khan and others
Bioinformatics, Volume 35, Issue 8, April 2019, Pages 1388–1394, https://doi.org/10.1093/bioinformatics/bty787
Published: 06 September 2018
Journal Article
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences
Aashish Jain and Daisuke Kihara
Bioinformatics, Volume 35, Issue 5, March 2019, Pages 753–759, https://doi.org/10.1093/bioinformatics/bty704
Published: 25 August 2018
Journal Article
DextMP: deep dive into text for predicting moonlighting proteins
Ishita K Khan and others
Bioinformatics, Volume 33, Issue 14, July 2017, Pages i83–i91, https://doi.org/10.1093/bioinformatics/btx231
Published: 12 July 2017
Journal Article
Ensemble-based evaluation for protein structure models
Michal Jamroz and others
Bioinformatics, Volume 32, Issue 12, June 2016, Pages i314–i321, https://doi.org/10.1093/bioinformatics/btw262
Published: 11 June 2016
Journal Article
Genome-scale prediction of moonlighting proteins using diverse protein association information
Ishita K. Khan and Daisuke Kihara
Bioinformatics, Volume 32, Issue 15, August 2016, Pages 2281–2288, https://doi.org/10.1093/bioinformatics/btw166
Published: 26 March 2016
Journal Article
Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0
Xiaolei Zhu and others
Bioinformatics, Volume 31, Issue 5, March 2015, Pages 707–713, https://doi.org/10.1093/bioinformatics/btu724
Published: 29 October 2014
Journal Article
PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool
Ishita K. Khan and others
Bioinformatics, Volume 31, Issue 2, January 2015, Pages 271–272, https://doi.org/10.1093/bioinformatics/btu646
Published: 01 October 2014
Journal Article
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16–18, 2014, Cincinnati, Ohio
Jim Cavalcoli and others
Bioinformatics, Volume 30, Issue 1, January 2014, Pages 148–149, https://doi.org/10.1093/bioinformatics/btt673
Published: 03 December 2013
Journal Article
Protein domain recurrence and order can enhance prediction of protein functions
Mario Abdel Messih and others
Bioinformatics, Volume 28, Issue 18, September 2012, Pages i444–i450, https://doi.org/10.1093/bioinformatics/bts398
Published: 03 September 2012
Journal Article
3D-SURFER: software for high-throughput protein surface comparison and analysis
David La and others
Bioinformatics, Volume 25, Issue 21, November 2009, Pages 2843–2844, https://doi.org/10.1093/bioinformatics/btp542
Published: 16 September 2009
Journal Article
ESG: extended similarity group method for automated protein function prediction
Meghana Chitale and others
Bioinformatics, Volume 25, Issue 14, July 2009, Pages 1739–1745, https://doi.org/10.1093/bioinformatics/btp309
Published: 12 May 2009
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