1-10 of 10
Authors: Ian Holmes
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Journal Article
JBrowseR: an R interface to the JBrowse 2 genome browser
Elliot A Hershberg and others
Bioinformatics, Volume 37, Issue 21, November 2021, Pages 3914–3915, https://doi.org/10.1093/bioinformatics/btab459
Published: 01 July 2021
Journal Article
Machine Boss: rapid prototyping of bioinformatic automata
Jordi Silvestre-Ryan and others
Bioinformatics, Volume 37, Issue 1, January 2021, Pages 29–35, https://doi.org/10.1093/bioinformatics/btaa633
Published: 19 July 2020
Journal Article
Cram-JS: reference-based decompression in node and the browser
Robert Buels and others
Bioinformatics, Volume 35, Issue 21, November 2019, Pages 4451–4452, https://doi.org/10.1093/bioinformatics/btz384
Published: 17 May 2019
Journal Article
HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction
Oscar Westesson and others
Bioinformatics, Volume 28, Issue 8, April 2012, Pages 1170–1171, https://doi.org/10.1093/bioinformatics/bts058
Published: 28 January 2012
Journal Article
Evaluating bacterial gene-finding HMM structures as probabilistic logic programs
Søren Mørk and Ian Holmes
Bioinformatics, Volume 28, Issue 5, March 2012, Pages 636–642, https://doi.org/10.1093/bioinformatics/btr698
Published: 03 January 2012
Journal Article
Specific alignment of structured RNA: stochastic grammars and sequence annealing
Robert K. Bradley and others
Bioinformatics, Volume 24, Issue 23, December 2008, Pages 2677–2683, https://doi.org/10.1093/bioinformatics/btn495
Published: 16 September 2008
Journal Article
Transducers: an emerging probabilistic framework for modeling indels on trees
Robert K. Bradley and Ian Holmes
Bioinformatics, Volume 23, Issue 23, December 2007, Pages 3258–3262, https://doi.org/10.1093/bioinformatics/btm402
Published: 05 September 2007
Journal Article
Phylocomposer and phylodirector: analysis and visualization of transducer indel models
Ian Holmes
Bioinformatics, Volume 23, Issue 23, December 2007, Pages 3263–3264, https://doi.org/10.1093/bioinformatics/btm432
Published: 05 September 2007
Journal Article
Using evolutionary Expectation Maximization to estimate indel rates
Ian Holmes
Bioinformatics, Volume 21, Issue 10, May 2005, Pages 2294–2300, https://doi.org/10.1093/bioinformatics/bti177
Published: 24 February 2005
Journal Article
Evolutionary HMMs: a Bayesian approach to multiple alignment
Ian Holmes and William J. Bruno
Bioinformatics, Volume 17, Issue 9, September 2001, Pages 803–820, https://doi.org/10.1093/bioinformatics/17.9.803
Published: 01 September 2001
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