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Authors: Jotun Hein
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Journal Article

KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation

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Anastasia Ignatieva and others
Bioinformatics, Volume 37, Issue 19, October 2021, Pages 3277–3284, https://doi.org/10.1093/bioinformatics/btab351
Published: 10 May 2021
Journal Article

Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information

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James W. J. Anderson and others
Bioinformatics, Volume 29, Issue 6, March 2013, Pages 704–710, https://doi.org/10.1093/bioinformatics/btt050
Published: 08 February 2013
Journal Article

StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction

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Preeti Arunapuram and others
Bioinformatics, Volume 29, Issue 5, March 2013, Pages 654–655, https://doi.org/10.1093/bioinformatics/btt025
Published: 17 January 2013
Journal Article

Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison

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Aziz Mithani and others
Bioinformatics, Volume 25, Issue 14, July 2009, Pages 1831–1832, https://doi.org/10.1093/bioinformatics/btp269
Published: 27 April 2009
Journal Article

A stochastic model for the evolution of metabolic networks with neighbor dependence

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Aziz Mithani and others
Bioinformatics, Volume 25, Issue 12, June 2009, Pages 1528–1535, https://doi.org/10.1093/bioinformatics/btp262
Published: 17 April 2009
Journal Article

StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees

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Ádám Novák and others
Bioinformatics, Volume 24, Issue 20, October 2008, Pages 2403–2404, https://doi.org/10.1093/bioinformatics/btn457
Published: 27 August 2008
Journal Article

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements

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Rahul Satija and others
Bioinformatics, Volume 24, Issue 10, May 2008, Pages 1236–1242, https://doi.org/10.1093/bioinformatics/btn104
Published: 18 March 2008
Journal Article

Annotation of selection strengths in viral genomes

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Stephen McCauley and others
Bioinformatics, Volume 23, Issue 22, November 2007, Pages 2978–2986, https://doi.org/10.1093/bioinformatics/btm472
Published: 05 October 2007
Journal Article

Comparative annotation of viral genomes with non-conserved gene structure

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Saskia de Groot and others
Bioinformatics, Volume 23, Issue 9, May 2007, Pages 1080–1089, https://doi.org/10.1093/bioinformatics/btm078
Published: 06 March 2007
Journal Article

GeneRecon—a coalescent based tool for fine-scale association mapping

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Thomas Mailund and others
Bioinformatics, Volume 22, Issue 18, September 2006, Pages 2317–2318, https://doi.org/10.1093/bioinformatics/btl153
Published: 21 April 2006
Journal Article

Using hidden Markov models and observed evolution to annotate viral genomes

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Stephen McCauley and Jotun Hein
Bioinformatics, Volume 22, Issue 11, June 2006, Pages 1308–1316, https://doi.org/10.1093/bioinformatics/btl092
Published: 13 April 2006
Journal Article

A nucleotide substitution model with nearest-neighbour interactions

Gerton Lunter and Jotun Hein
Bioinformatics, Volume 20, Issue suppl_1, August 2004, Pages i216–i223, https://doi.org/10.1093/bioinformatics/bth901
Published: 04 August 2004
Journal Article

Gene finding with a hidden Markov model of genome structure and evolution

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Jakob Skou Pedersen and Jotun Hein
Bioinformatics, Volume 19, Issue 2, January 2003, Pages 219–227, https://doi.org/10.1093/bioinformatics/19.2.219
Published: 22 January 2003