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Authors: Markus List
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Journal Article

Online bias-aware disease module mining with ROBUST-Web

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Suryadipto Sarkar and others
Bioinformatics, Volume 39, Issue 6, June 2023, btad345, https://doi.org/10.1093/bioinformatics/btad345
Published: 26 May 2023
Journal Article

spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape

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Fabio Boniolo and others
Bioinformatics, Volume 39, Issue 5, May 2023, btad276, https://doi.org/10.1093/bioinformatics/btad276
Published: 21 April 2023
Journal Article

Systematic analysis of alternative splicing in time course data using Spycone

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Chit Tong Lio and others
Bioinformatics, Volume 39, Issue 1, January 2023, btac846, https://doi.org/10.1093/bioinformatics/btac846
Published: 29 December 2022
Journal Article

SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition

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Alexander Dietrich and others
Bioinformatics, Volume 38, Issue Supplement_2, September 2022, Pages ii141–ii147, https://doi.org/10.1093/bioinformatics/btac499
Published: 18 September 2022
Journal Article

Robust disease module mining via enumeration of diverse prize-collecting Steiner trees

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Judith Bernett and others
Bioinformatics, Volume 38, Issue 6, March 2022, Pages 1600–1606, https://doi.org/10.1093/bioinformatics/btab876
Published: 04 January 2022
Journal Article

ASimulatoR: splice-aware RNA-Seq data simulation

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Quirin Manz and others
Bioinformatics, Volume 37, Issue 18, September 2021, Pages 3008–3010, https://doi.org/10.1093/bioinformatics/btab142
Published: 27 February 2021
Journal Article

BiCoN: network-constrained biclustering of patients and omics data

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Olga Lazareva and others
Bioinformatics, Volume 37, Issue 16, August 2021, Pages 2398–2404, https://doi.org/10.1093/bioinformatics/btaa1076
Published: 26 December 2020
Journal Article

A framework for modeling epistatic interaction

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David B Blumenthal and others
Bioinformatics, Volume 37, Issue 12, June 2021, Pages 1708–1716, https://doi.org/10.1093/bioinformatics/btaa990
Published: 30 November 2020
Journal Article

EpiGEN: an epistasis simulation pipeline

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David B Blumenthal and others
Bioinformatics, Volume 36, Issue 19, October 2020, Pages 4957–4959, https://doi.org/10.1093/bioinformatics/btaa245
Published: 14 April 2020
Journal Article

Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

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Gregor Sturm and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i436–i445, https://doi.org/10.1093/bioinformatics/btz363
Published: 05 July 2019
Journal Article

Large-scale inference of competing endogenous RNA networks with sparse partial correlation

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Markus List and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i596–i604, https://doi.org/10.1093/bioinformatics/btz314
Published: 05 July 2019
Journal Article

An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets

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Florian Schmidt and others
Bioinformatics, Volume 34, Issue 17, September 2018, Pages i908–i916, https://doi.org/10.1093/bioinformatics/bty553
Published: 08 September 2018
Journal Article

JAMI: fast computation of conditional mutual information for ceRNA network analysis

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Andrea Hornakova and others
Bioinformatics, Volume 34, Issue 17, September 2018, Pages 3050–3051, https://doi.org/10.1093/bioinformatics/bty221
Published: 06 April 2018
Journal Article

DeepBlueR: large-scale epigenomic analysis in R

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Felipe Albrecht and others
Bioinformatics, Volume 33, Issue 13, July 2017, Pages 2063–2064, https://doi.org/10.1093/bioinformatics/btx099
Published: 22 February 2017
Journal Article

Microarray R-based analysis of complex lysate experiments with MIRACLE

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Markus List and others
Bioinformatics, Volume 30, Issue 17, September 2014, Pages i631–i638, https://doi.org/10.1093/bioinformatics/btu473
Published: 22 August 2014