1-6 of 6
Authors: Mohammed Alser
Journal Article
A framework for high-throughput sequence alignment using real processing-in-memory systems
Bioinformatics, Volume 39, Issue 5, May 2023, btad155, https://doi.org/10.1093/bioinformatics/btad155
Published: 27 March 2023
Journal Article
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs
Bioinformatics, Volume 39, Issue 5, May 2023, btad151, https://doi.org/10.1093/bioinformatics/btad151
Published: 24 March 2023
Journal Article
SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs
Bioinformatics, Volume 36, Issue 22-23, December 2020, Pages 5282–5290, https://doi.org/10.1093/bioinformatics/btaa1015
Published: 26 December 2020
Journal Article
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
Bioinformatics, Volume 36, Issue 12, June 2020, Pages 3669–3679, https://doi.org/10.1093/bioinformatics/btaa179
Published: 13 March 2020
Journal Article
Shouji: a fast and efficient pre-alignment filter for sequence alignment
Bioinformatics, Volume 35, Issue 21, November 2019, Pages 4255–4263, https://doi.org/10.1093/bioinformatics/btz234
Published: 28 March 2019
Journal Article
GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping
Bioinformatics, Volume 33, Issue 21, November 012017, Pages 3355–3363, https://doi.org/10.1093/bioinformatics/btx342
Published: 31 May 2017
