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Authors: Mohammed El-Kebir
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Journal Article

doubletD: detecting doublets in single-cell DNA sequencing data

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Leah L Weber and others
Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i214–i221, https://doi.org/10.1093/bioinformatics/btab266
Published: 12 July 2021
Journal Article

Detecting evolutionary patterns of cancers using consensus trees

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Sarah Christensen and others
Bioinformatics, Volume 36, Issue Supplement_2, December 2020, Pages i684–i691, https://doi.org/10.1093/bioinformatics/btaa801
Published: 29 December 2020
Journal Article

ClonArch: visualizing the spatial clonal architecture of tumors

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Jiaqi Wu and Mohammed El-Kebir
Bioinformatics, Volume 36, Issue Supplement_1, July 2020, Pages i161–i168, https://doi.org/10.1093/bioinformatics/btaa471
Published: 13 July 2020
Journal Article

Sampling and summarizing transmission trees with multi-strain infections

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Palash Sashittal and Mohammed El-Kebir
Bioinformatics, Volume 36, Issue Supplement_1, July 2020, Pages i362–i370, https://doi.org/10.1093/bioinformatics/btaa438
Published: 13 July 2020
Journal Article

Summarizing the solution space in tumor phylogeny inference by multiple consensus trees

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Nuraini Aguse and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i408–i416, https://doi.org/10.1093/bioinformatics/btz312
Published: 05 July 2019
Journal Article

SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error

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Mohammed El-Kebir
Bioinformatics, Volume 34, Issue 17, September 2018, Pages i671–i679, https://doi.org/10.1093/bioinformatics/bty589
Published: 08 September 2018
Journal Article

metaModules identifies key functional subnetworks in microbiome-related disease

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Ali May and others
Bioinformatics, Volume 32, Issue 11, June 2016, Pages 1678–1685, https://doi.org/10.1093/bioinformatics/btv526
Published: 05 September 2015
Journal Article

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data

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Mohammed El-Kebir and others
Bioinformatics, Volume 31, Issue 12, June 2015, Pages i62–i70, https://doi.org/10.1093/bioinformatics/btv261
Published: 10 June 2015
Journal Article

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

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Mohammed El-Kebir and others
Bioinformatics, Volume 31, Issue 19, October 2015, Pages 3147–3155, https://doi.org/10.1093/bioinformatics/btv316
Published: 27 May 2015