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Authors: René L Warren
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Journal Article

ntHash2: recursive spaced seed hashing for nucleotide sequences

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Parham Kazemi and others
Bioinformatics, Volume 38, Issue 20, 15 October 2022, Pages 4812–4813, https://doi.org/10.1093/bioinformatics/btac564
Published: 24 August 2022
Journal Article

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

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René L Warren and Inanç Birol
Bioinformatics, Volume 36, Issue 21, November 2020, Pages 5271–5273, https://doi.org/10.1093/bioinformatics/btaa756
Published: 27 August 2020
Journal Article

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

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Lauren Coombe and others
Bioinformatics, Volume 36, Issue 12, June 2020, Pages 3885–3887, https://doi.org/10.1093/bioinformatics/btaa253
Published: 20 April 2020
Journal Article

ntEdit: scalable genome sequence polishing

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René L Warren and others
Bioinformatics, Volume 35, Issue 21, November 2019, Pages 4430–4432, https://doi.org/10.1093/bioinformatics/btz400
Published: 16 May 2019
Journal Article

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

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Hamza Khan and others
Bioinformatics, Volume 34, Issue 10, May 2018, Pages 1697–1704, https://doi.org/10.1093/bioinformatics/btx839
Published: 29 December 2017
Journal Article

ARCS: scaffolding genome drafts with linked reads

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Sarah Yeo and others
Bioinformatics, Volume 34, Issue 5, March 2018, Pages 725–731, https://doi.org/10.1093/bioinformatics/btx675
Published: 23 October 2017
Journal Article

Kollector: transcript-informed, targeted de novo assembly of gene loci

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Erdi Kucuk and others
Bioinformatics, Volume 33, Issue 17, September 2017, Page 2789, https://doi.org/10.1093/bioinformatics/btx405
Published: 11 July 2017
Journal Article

Kollector: transcript-informed, targeted de novo assembly of gene loci

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Erdi Kucuk and others
Bioinformatics, Volume 33, Issue 12, June 2017, Pages 1782–1788, https://doi.org/10.1093/bioinformatics/btx078
Published: 10 February 2017
Journal Article

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art

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Justin Chu and others
Bioinformatics, Volume 33, Issue 8, April 2017, Pages 1261–1270, https://doi.org/10.1093/bioinformatics/btw811
Published: 21 December 2016
Journal Article

Profiling model T-cell metagenomes with short reads

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René L. Warren and others
Bioinformatics, Volume 25, Issue 4, February 2009, Pages 458–464, https://doi.org/10.1093/bioinformatics/btp010
Published: 09 January 2009
Journal Article

Assembling millions of short DNA sequences using SSAKE

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René L. Warren and others
Bioinformatics, Volume 23, Issue 4, February 2007, Pages 500–501, https://doi.org/10.1093/bioinformatics/btl629
Published: 08 December 2006
Journal Article

THOR: targeted high-throughput ortholog reconstructor

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Matthew N. Bainbridge and others
Bioinformatics, Volume 23, Issue 19, October 2007, Pages 2622–2624, https://doi.org/10.1093/bioinformatics/btl513
Published: 11 October 2006