1-20 of 36
Authors: Rita Casadio
Journal Article
CoCoNat: a novel method based on deep learning for coiled-coil prediction
Bioinformatics, Volume 39, Issue 8, August 2023, btad495, https://doi.org/10.1093/bioinformatics/btad495
Published: 04 August 2023
Journal Article
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants
Bioinformatics, Volume 38, Issue 23, 1 December 2022, Pages 5168–5174, https://doi.org/10.1093/bioinformatics/btac678
Published: 13 October 2022
Journal Article
DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks
Bioinformatics, Volume 36, Issue 1, January 2020, Pages 56–64, https://doi.org/10.1093/bioinformatics/btz512
Published: 20 June 2019
Journal Article
On the biases in predictions of protein stability changes upon variations: the INPS test case
Bioinformatics, Volume 35, Issue 14, July 2019, Pages 2525–2527, https://doi.org/10.1093/bioinformatics/bty979
Published: 29 November 2018
Journal Article
DeepSig: deep learning improves signal peptide detection in proteins
Bioinformatics, Volume 34, Issue 10, May 2018, Pages 1690–1696, https://doi.org/10.1093/bioinformatics/btx818
Published: 21 December 2017
Journal Article
ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model
Bioinformatics, Volume 33, Issue 11, June 2017, Pages 1656–1663, https://doi.org/10.1093/bioinformatics/btx044
Published: 25 January 2017
Journal Article
SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments
Bioinformatics, Volume 33, Issue 3, February 2017, Pages 347–353, https://doi.org/10.1093/bioinformatics/btw656
Published: 22 October 2016
Journal Article
NET-GE: a web-server for NETwork-based human gene enrichment
Bioinformatics, Volume 32, Issue 22, November 2016, Pages 3489–3491, https://doi.org/10.1093/bioinformatics/btw508
Published: 02 August 2016
Journal Article
INPS-MD: a web server to predict stability of protein variants from sequence and structure
Bioinformatics, Volume 32, Issue 16, August 2016, Pages 2542–2544, https://doi.org/10.1093/bioinformatics/btw192
Published: 10 April 2016
Journal Article
AlignBucket: a tool to speed up ‘all-against-all’ protein sequence alignments optimizing length constraints
Bioinformatics, Volume 31, Issue 23, December 2015, Pages 3841–3843, https://doi.org/10.1093/bioinformatics/btv451
Published: 30 July 2015
Journal Article
TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins
Bioinformatics, Volume 31, Issue 20, October 2015, Pages 3269–3275, https://doi.org/10.1093/bioinformatics/btv367
Published: 16 June 2015
Journal Article
INPS: predicting the impact of non-synonymous variations on protein stability from sequence
Bioinformatics, Volume 31, Issue 17, September 2015, Pages 2816–2821, https://doi.org/10.1093/bioinformatics/btv291
Published: 07 May 2015
Journal Article
TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs
Bioinformatics, Volume 30, Issue 20, October 2014, Pages 2973–2974, https://doi.org/10.1093/bioinformatics/btu411
Published: 27 June 2014
Journal Article
BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming
Bioinformatics, Volume 29, Issue 24, December 2013, Pages 3151–3157, https://doi.org/10.1093/bioinformatics/btt555
Published: 23 September 2013
Journal Article
The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields
Bioinformatics, Volume 29, Issue 8, April 2013, Pages 981–988, https://doi.org/10.1093/bioinformatics/btt089
Published: 21 February 2013
Journal Article
BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes
Bioinformatics, Volume 29, Issue 4, February 2013, Pages 504–505, https://doi.org/10.1093/bioinformatics/bts728
Published: 06 January 2013
Journal Article
Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines
Bioinformatics, Volume 27, Issue 22, November 2011, Pages 3123–3128, https://doi.org/10.1093/bioinformatics/btr549
Published: 03 October 2011
Journal Article
Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization
Bioinformatics, Volume 27, Issue 16, August 2011, Pages 2224–2230, https://doi.org/10.1093/bioinformatics/btr387
Published: 29 June 2011
Journal Article
MemLoci: predicting subcellular localization of membrane proteins in eukaryotes
Bioinformatics, Volume 27, Issue 9, May 2011, Pages 1224–1230, https://doi.org/10.1093/bioinformatics/btr108
Published: 02 March 2011
Journal Article
Fast overlapping of protein contact maps by alignment of eigenvectors
Bioinformatics, Volume 26, Issue 18, September 2010, Pages 2250–2258, https://doi.org/10.1093/bioinformatics/btq402
Published: 07 July 2010
