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Authors: Ruiqing Zheng
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Journal Article
scMAE: a masked autoencoder for single-cell RNA-seq clustering
Zhaoyu Fang and others
Bioinformatics, Volume 40, Issue 1, January 2024, btae020, https://doi.org/10.1093/bioinformatics/btae020
Published: 16 January 2024
Journal Article
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization
Xuhua Yan and others
Bioinformatics, Volume 39, Issue 8, August 2023, btad505, https://doi.org/10.1093/bioinformatics/btad505
Published: 16 August 2023
Journal Article
CellBRF: a feature selection method for single-cell clustering using cell balance and random forest
Yunpei Xu and others
Bioinformatics, Volume 39, Issue Supplement_1, June 2023, Pages i368–i376, https://doi.org/10.1093/bioinformatics/btad216
Published: 30 June 2023
Journal Article
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity
Xuhua Yan and others
Bioinformatics, Volume 39, Issue 3, March 2023, btad099, https://doi.org/10.1093/bioinformatics/btad099
Published: 23 February 2023
Journal Article
SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation
Ruiqing Zheng and others
Bioinformatics, Volume 35, Issue 19, October 2019, Pages 3642–3650, https://doi.org/10.1093/bioinformatics/btz139
Published: 01 March 2019
Journal Article
BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks
Ruiqing Zheng and others
Bioinformatics, Volume 35, Issue 11, June 2019, Pages 1893–1900, https://doi.org/10.1093/bioinformatics/bty908
Published: 05 November 2018
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