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Authors: Sebastian Deorowicz
Journal Article
AGC: compact representation of assembled genomes with fast queries and updates
Bioinformatics, Volume 39, Issue 3, March 2023, btad097, https://doi.org/10.1093/bioinformatics/btad097
Published: 02 March 2023
Journal Article
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
Bioinformatics, Volume 38, Issue 18, September 2022, Pages 4423–4425, https://doi.org/10.1093/bioinformatics/btac528
Published: 29 July 2022
Journal Article
PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences
Bioinformatics, Volume 38, Issue 5, March 2022, Pages 1447–1449, https://doi.org/10.1093/bioinformatics/btab837
Published: 14 December 2021
Journal Article
VCFShark: how to squeeze a VCF file
Bioinformatics, Volume 37, Issue 19, October 2021, Pages 3358–3360, https://doi.org/10.1093/bioinformatics/btab211
Published: 31 March 2021
Journal Article
GTShark: genotype compression in large projects
Bioinformatics, Volume 35, Issue 22, November 2019, Pages 4791–4793, https://doi.org/10.1093/bioinformatics/btz508
Published: 24 June 2019
Journal Article
Whisper: read sorting allows robust mapping of DNA sequencing data
Bioinformatics, Volume 35, Issue 12, June 2019, Pages 2043–2050, https://doi.org/10.1093/bioinformatics/bty927
Published: 08 November 2018
Journal Article
CoMSA: compression of protein multiple sequence alignment files
Bioinformatics, Volume 35, Issue 2, January 2019, Pages 227–234, https://doi.org/10.1093/bioinformatics/bty619
Published: 13 July 2018
Journal Article
Kmer-db: instant evolutionary distance estimation
Bioinformatics, Volume 35, Issue 1, January 2019, Pages 133–136, https://doi.org/10.1093/bioinformatics/bty610
Published: 09 July 2018
Journal Article
FaStore: a space-saving solution for raw sequencing data
Bioinformatics, Volume 34, Issue 16, August 2018, Pages 2748–2756, https://doi.org/10.1093/bioinformatics/bty205
Published: 29 March 2018
Journal Article
GTC: how to maintain huge genotype collections in a compressed form
Bioinformatics, Volume 34, Issue 11, June 2018, Pages 1834–1840, https://doi.org/10.1093/bioinformatics/bty023
Published: 16 January 2018
Journal Article
KMC 3: counting and manipulating k-mer statistics
Bioinformatics, Volume 33, Issue 17, September 2017, Pages 2759–2761, https://doi.org/10.1093/bioinformatics/btx304
Published: 04 May 2017
Journal Article
RECKONER: read error corrector based on KMC
Bioinformatics, Volume 33, Issue 7, April 2017, Pages 1086–1089, https://doi.org/10.1093/bioinformatics/btw746
Published: 30 December 2016
Journal Article
Comment on: ‘ERGC: an efficient referential genome compression algorithm’
Bioinformatics, Volume 32, Issue 7, April 2016, Pages 1115–1117, https://doi.org/10.1093/bioinformatics/btv704
Published: 28 November 2015
Journal Article
KMC 2: fast and resource-frugal k-mer counting
Bioinformatics, Volume 31, Issue 10, May 2015, Pages 1569–1576, https://doi.org/10.1093/bioinformatics/btv022
Published: 20 January 2015
Journal Article
Disk-based compression of data from genome sequencing
Bioinformatics, Volume 31, Issue 9, May 2015, Pages 1389–1395, https://doi.org/10.1093/bioinformatics/btu844
Published: 22 December 2014
Journal Article
DSRC 2—Industry-oriented compression of FASTQ files
Bioinformatics, Volume 30, Issue 15, August 2014, Pages 2213–2215, https://doi.org/10.1093/bioinformatics/btu208
Published: 18 April 2014
Journal Article
Genome compression: a novel approach for large collections
Bioinformatics, Volume 29, Issue 20, October 2013, Pages 2572–2578, https://doi.org/10.1093/bioinformatics/btt460
Published: 21 August 2013
Journal Article
Robust relative compression of genomes with random access
Bioinformatics, Volume 27, Issue 21, November 2011, Pages 2979–2986, https://doi.org/10.1093/bioinformatics/btr505
Published: 05 September 2011
Journal Article
Compression of DNA sequence reads in FASTQ format
Bioinformatics, Volume 27, Issue 6, March 2011, Pages 860–862, https://doi.org/10.1093/bioinformatics/btr014
Published: 19 January 2011
