1-20 of 20
Authors: Seiya Imoto
Journal Article
ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics
Bioinformatics, Volume 39, Issue 10, October 2023, btad622, https://doi.org/10.1093/bioinformatics/btad622
Published: 16 October 2023
Journal Article
Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings
Bioinformatics, Volume 39, Issue 10, October 2023, btad617, https://doi.org/10.1093/bioinformatics/btad617
Published: 10 October 2023
Journal Article
Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification
Bioinformatics, Volume 39, Issue 3, March 2023, btad114, https://doi.org/10.1093/bioinformatics/btad114
Published: 02 March 2023
Journal Article
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships
Bioinformatics, Volume 39, Issue 3, March 2023, btad094, https://doi.org/10.1093/bioinformatics/btad094
Published: 16 February 2023
Journal Article
Identification of bacteriophage genome sequences with representation learning
Bioinformatics, Volume 38, Issue 18, September 2022, Pages 4264–4270, https://doi.org/10.1093/bioinformatics/btac509
Published: 03 August 2022
Journal Article
HEAL: an automated deep learning framework for cancer histopathology image analysis
Bioinformatics, Volume 37, Issue 22, November 2021, Pages 4291–4295, https://doi.org/10.1093/bioinformatics/btab380
Published: 19 May 2021
Journal Article
Halcyon: an accurate basecaller exploiting an encoder–decoder model with monotonic attention
Bioinformatics, Volume 37, Issue 9, May 2021, Pages 1211–1217, https://doi.org/10.1093/bioinformatics/btaa953
Published: 07 December 2020
Journal Article
Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens
Bioinformatics, Volume 36, Issue 18, September 2020, Pages 4813–4816, https://doi.org/10.1093/bioinformatics/btaa616
Published: 16 September 2020
Journal Article
A Bayesian model integration for mutation calling through data partitioning
Bioinformatics, Volume 35, Issue 21, November 2019, Pages 4247–4254, https://doi.org/10.1093/bioinformatics/btz233
Published: 29 March 2019
Journal Article
Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data
Bioinformatics, Volume 31, Issue 1, January 2015, Pages 116–118, https://doi.org/10.1093/bioinformatics/btu593
Published: 04 September 2014
Journal Article
HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations
Bioinformatics, Volume 30, Issue 23, December 2014, Pages 3302–3309, https://doi.org/10.1093/bioinformatics/btu537
Published: 14 August 2014
Journal Article
Statistical model-based testing to evaluate the recurrence of genomic aberrations
Bioinformatics, Volume 28, Issue 12, June 2012, Pages i115–i120, https://doi.org/10.1093/bioinformatics/bts203
Published: 09 June 2012
Journal Article
SiGN-SSM: open source parallel software for estimating gene networks with state space models
Bioinformatics, Volume 27, Issue 8, April 2011, Pages 1172–1173, https://doi.org/10.1093/bioinformatics/btr078
Published: 10 February 2011
Journal Article
Model-free unsupervised gene set screening based on information enrichment in expression profiles
Bioinformatics, Volume 26, Issue 24, December 2010, Pages 3090–3097, https://doi.org/10.1093/bioinformatics/btq592
Published: 19 October 2010
Journal Article
Inferring dynamic gene networks under varying conditions for transcriptomic network comparison
Bioinformatics, Volume 26, Issue 8, April 2010, Pages 1064–1072, https://doi.org/10.1093/bioinformatics/btq080
Published: 01 March 2010
Journal Article
Bayesian learning of biological pathways on genomic data assimilation
Bioinformatics, Volume 24, Issue 22, November 2008, Pages 2592–2601, https://doi.org/10.1093/bioinformatics/btn483
Published: 25 September 2008
Journal Article
Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models
Bioinformatics, Volume 24, Issue 7, April 2008, Pages 932–942, https://doi.org/10.1093/bioinformatics/btm639
Published: 21 February 2008
Journal Article
ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles
Bioinformatics, Volume 22, Issue 12, June 2006, Pages 1538–1539, https://doi.org/10.1093/bioinformatics/btl129
Published: 10 April 2006
Journal Article
Estimating gene regulatory networks and protein–protein interactions of Saccharomyces cerevisiae from multiple genome-wide data
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii206–ii212, https://doi.org/10.1093/bioinformatics/bti1133
Published: 01 September 2005
Journal Article
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection
Bioinformatics, Volume 19, Issue suppl_2, September 2003, Pages ii227–ii236, https://doi.org/10.1093/bioinformatics/btg1082
Published: 27 September 2003
