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Authors: Stefano Lonardi
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Journal Article

Prediction of histone post-translational modifications using deep learning

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Dipankar Ranjan Baisya and Stefano Lonardi
Bioinformatics, Volume 36, Issue 24, December 2020, Pages 5610–5617, https://doi.org/10.1093/bioinformatics/btaa1075
Published: 26 December 2020
Journal Article

Selfish: discovery of differential chromatin interactions via a self-similarity measure

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Abbas Roayaei Ardakany and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i145–i153, https://doi.org/10.1093/bioinformatics/btz362
Published: 05 July 2019
Journal Article

Accurate detection of chimeric contigs via Bionano optical maps

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Weihua Pan and Stefano Lonardi
Bioinformatics, Volume 35, Issue 10, May 2019, Pages 1760–1762, https://doi.org/10.1093/bioinformatics/bty850
Published: 08 October 2018
Journal Article

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps

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Weihua Pan and others
Bioinformatics, Volume 34, Issue 13, July 2018, Pages i43–i51, https://doi.org/10.1093/bioinformatics/bty255
Published: 27 June 2018
Journal Article

Higher classification sensitivity of short metagenomic reads with CLARK-S

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Rachid Ounit and Stefano Lonardi
Bioinformatics, Volume 32, Issue 24, december 2016, Pages 3823–3825, https://doi.org/10.1093/bioinformatics/btw542
Published: 18 August 2016
Journal Article

BRAT-nova: fast and accurate mapping of bisulfite-treated reads

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Elena Y. Harris and others
Bioinformatics, Volume 32, Issue 17, September 2016, Pages 2696–2698, https://doi.org/10.1093/bioinformatics/btw226
Published: 23 February 2016
Journal Article

De novo meta-assembly of ultra-deep sequencing data

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Hamid Mirebrahim and others
Bioinformatics, Volume 31, Issue 12, June 2015, Pages i9–i16, https://doi.org/10.1093/bioinformatics/btv226
Published: 10 June 2015
Journal Article

When less is more: ‘slicing’ sequencing data improves read decoding accuracy and de novo assembly quality

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Stefano Lonardi and others
Bioinformatics, Volume 31, Issue 18, September 2015, Pages 2972–2980, https://doi.org/10.1093/bioinformatics/btv311
Published: 20 May 2015
Journal Article

NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model

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Anton Polishko and others
Bioinformatics, Volume 28, Issue 12, June 2012, Pages i242–i249, https://doi.org/10.1093/bioinformatics/bts206
Published: 09 June 2012
Journal Article

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

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Elena Y. Harris and others
Bioinformatics, Volume 28, Issue 13, July 2012, Pages 1795–1796, https://doi.org/10.1093/bioinformatics/bts264
Published: 03 May 2012
Journal Article

BRAT: bisulfite-treated reads analysis tool

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Elena Y. Harris and others
Bioinformatics, Volume 26, Issue 19, October 2010, Page 2499, https://doi.org/10.1093/bioinformatics/btq494
Published: 16 September 2010
Journal Article

BRAT: bisulfite-treated reads analysis tool

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Elena Y. Harris and others
Bioinformatics, Volume 26, Issue 4, February 2010, Pages 572–573, https://doi.org/10.1093/bioinformatics/btp706
Published: 22 December 2009
Journal Article

Efficient selection of unique and popular oligos for large EST databases

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Jie Zheng and others
Bioinformatics, Volume 20, Issue 13, September 2004, Pages 2101–2112, https://doi.org/10.1093/bioinformatics/bth210
Published: 01 April 2004