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Authors: Terence P Speed
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Journal Article

DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data

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Chengzhong Ye and others
Bioinformatics, Volume 35, Issue 24, December 2019, Pages 5155–5162, https://doi.org/10.1093/bioinformatics/btz453
Published: 14 June 2019
Journal Article

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements

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Timothy J Peters and others
Bioinformatics, Volume 35, Issue 4, February 2019, Pages 560–570, https://doi.org/10.1093/bioinformatics/bty675
Published: 01 August 2018
Journal Article

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line

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Steven M. Hill and others
Bioinformatics, Volume 28, Issue 21, November 2012, Pages 2804–2810, https://doi.org/10.1093/bioinformatics/bts514
Published: 24 August 2012
Journal Article

SRMA: an R package for resequencing array data analysis

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Nianxiang Zhang and others
Bioinformatics, Volume 28, Issue 14, July 2012, Pages 1928–1930, https://doi.org/10.1093/bioinformatics/bts286
Published: 10 May 2012
Journal Article

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6

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Henrik Bengtsson and others
Bioinformatics, Volume 25, Issue 17, September 2009, Pages 2149–2156, https://doi.org/10.1093/bioinformatics/btp371
Published: 17 June 2009
Journal Article

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods

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Henrik Bengtsson and others
Bioinformatics, Volume 25, Issue 7, April 2009, Pages 861–867, https://doi.org/10.1093/bioinformatics/btp074
Published: 04 February 2009
Journal Article

Sparse combinatorial inference with an application in cancer biology

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Sach Mukherjee and others
Bioinformatics, Volume 25, Issue 2, January 2009, Pages 265–271, https://doi.org/10.1093/bioinformatics/btn611
Published: 27 November 2008
Journal Article

A genotype calling algorithm for affymetrix SNP arrays

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Nusrat Rabbee and Terence P. Speed
Bioinformatics, Volume 22, Issue 1, January 2006, Pages 7–12, https://doi.org/10.1093/bioinformatics/bti741
Published: 02 November 2005
Journal Article

A systematic approach for comprehensive T-cell epitope discovery using peptide libraries

Tim Beißbarth and others
Bioinformatics, Volume 21, Issue suppl_1, June 2005, Pages i29–i37, https://doi.org/10.1093/bioinformatics/bti1013
Published: 01 June 2005
Journal Article

Statistical modeling of sequencing errors in SAGE libraries

Tim Beißbarth and others
Bioinformatics, Volume 20, Issue suppl_1, August 2004, Pages i31–i39, https://doi.org/10.1093/bioinformatics/bth924
Published: 04 August 2004
Journal Article

A benchmark for Affymetrix GeneChip expression measures

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Leslie M. Cope and others
Bioinformatics, Volume 20, Issue 3, February 2004, Pages 323–331, https://doi.org/10.1093/bioinformatics/btg410
Published: 12 February 2004
Journal Article

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

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Tim Beißbarth and Terence P. Speed
Bioinformatics, Volume 20, Issue 9, June 2004, Pages 1464–1465, https://doi.org/10.1093/bioinformatics/bth088
Published: 12 February 2004