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Authors: William Stafford Noble
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Journal Article
LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis
Laetitia Meng-Papaxanthos and others
Bioinformatics, Volume 39, Issue 7, July 2023, btad420, https://doi.org/10.1093/bioinformatics/btad420
Published: 08 July 2023
Journal Article
MS1Connect: a mass spectrometry run similarity measure
Andy Lin and others
Bioinformatics, Volume 39, Issue 2, February 2023, btad058, https://doi.org/10.1093/bioinformatics/btad058
Published: 25 January 2023
Journal Article
Group-walk: a rigorous approach to group-wise false discovery rate analysis by target-decoy competition
Jack Freestone and others
Bioinformatics, Volume 38, Issue Supplement_2, September 2022, Pages ii82–ii88, https://doi.org/10.1093/bioinformatics/btac471
Published: 18 September 2022
Journal Article
Linking cells across single-cell modalities by synergistic matching of neighborhood structure
Borislav H Hristov and others
Bioinformatics, Volume 38, Issue Supplement_2, September 2022, Pages ii148–ii154, https://doi.org/10.1093/bioinformatics/btac481
Published: 18 September 2022
Journal Article
DIAmeter: matching peptides to data-independent acquisition mass spectrometry data
Yang Young Lu and others
Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i434–i442, https://doi.org/10.1093/bioinformatics/btab284
Published: 12 July 2021
Journal Article
HiCRep.py: fast comparison of Hi-C contact matrices in Python
Dejun Lin and others
Bioinformatics, Volume 37, Issue 18, September 2021, Pages 2996–2997, https://doi.org/10.1093/bioinformatics/btab097
Published: 12 February 2021
Journal Article
Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data
Jacob Schreiber and others
Bioinformatics, Volume 37, Issue 4, February 2021, Pages 439–447, https://doi.org/10.1093/bioinformatics/btaa830
Published: 23 September 2020
Journal Article
Response to comments on ‘Empirical comparison of web-based antimicrobial peptide prediction tools’
Musa Nur Gabere and William Stafford Noble
Bioinformatics, Volume 35, Issue 15, August 2019, Pages 2695–2696, https://doi.org/10.1093/bioinformatics/bty1024
Published: 18 December 2018
Journal Article
Unsupervised embedding of single-cell Hi-C data
Jie Liu and others
Bioinformatics, Volume 34, Issue 13, July 2018, Pages i96–i104, https://doi.org/10.1093/bioinformatics/bty285
Published: 27 June 2018
Journal Article
GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs
Oana Ursu and others
Bioinformatics, Volume 34, Issue 16, August 2018, Pages 2701–2707, https://doi.org/10.1093/bioinformatics/bty164
Published: 15 March 2018
Journal Article
Segway 2.0: Gaussian mixture models and minibatch training
Rachel C W Chan and others
Bioinformatics, Volume 34, Issue 4, February 2018, Pages 669–671, https://doi.org/10.1093/bioinformatics/btx603
Published: 22 September 2017
Journal Article
DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding
Wenxiu Ma and others
Bioinformatics, Volume 33, Issue 19, October 2017, Pages 3003–3010, https://doi.org/10.1093/bioinformatics/btx336
Published: 24 May 2017
Journal Article
Empirical comparison of web-based antimicrobial peptide prediction tools
Musa Nur Gabere and William Stafford Noble
Bioinformatics, Volume 33, Issue 13, July 2017, Pages 1921–1929, https://doi.org/10.1093/bioinformatics/btx081
Published: 15 February 2017
Journal Article
MCAST: scanning for cis-regulatory motif clusters
Charles E. Grant and others
Bioinformatics, Volume 32, Issue 8, April 2016, Pages 1217–1219, https://doi.org/10.1093/bioinformatics/btv750
Published: 24 December 2015
Journal Article
A statistical approach for inferring the 3D structure of the genome
Nelle Varoquaux and others
Bioinformatics, Volume 30, Issue 12, June 2014, Pages i26–i33, https://doi.org/10.1093/bioinformatics/btu268
Published: 11 June 2014
Journal Article
Epigenetic priors for identifying active transcription factor binding sites
Gabriel Cuellar-Partida and others
Bioinformatics, Volume 28, Issue 1, January 2012, Pages 56–62, https://doi.org/10.1093/bioinformatics/btr614
Published: 08 November 2011
Journal Article
Improved similarity scores for comparing motifs
Emi Tanaka and others
Bioinformatics, Volume 27, Issue 12, June 2011, Pages 1603–1609, https://doi.org/10.1093/bioinformatics/btr257
Published: 04 May 2011
Journal Article
FIMO: scanning for occurrences of a given motif
Charles E. Grant and others
Bioinformatics, Volume 27, Issue 7, April 2011, Pages 1017–1018, https://doi.org/10.1093/bioinformatics/btr064
Published: 16 February 2011
Journal Article
The Genomedata format for storing large-scale functional genomics data
Michael M. Hoffman and others
Bioinformatics, Volume 26, Issue 11, June 2010, Pages 1458–1459, https://doi.org/10.1093/bioinformatics/btq164
Published: 29 April 2010
Journal Article
Assessing phylogenetic motif models for predicting transcription factor binding sites
John Hawkins and others
Bioinformatics, Volume 25, Issue 12, June 2009, Pages i339–i347, https://doi.org/10.1093/bioinformatics/btp201
Published: 27 May 2009
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