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Engineering enzyme activity using an expanded amino acid alphabet
Zachary Birch-Price and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzac013, https://doi.org/10.1093/protein/gzac013
Enzyme design and engineering strategies are typically constrained by the limited size of nature’s genetic alphabet, comprised of only 20 canonical amino acids. In recent years, site-selective incorporation of non-canonical amino acids (ncAAs) via an expanded genetic code has emerged as a powerful means of inserting new ...
Data-driven enzyme engineering to identify function-enhancing enzymes
Yaoyukun Jiang and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzac009, https://doi.org/10.1093/protein/gzac009
Identifying function-enhancing enzyme variants is a ‘holy grail’ challenge in protein science because it will allow researchers to expand the biocatalytic toolbox for late-stage functionalization of drug-like molecules, environmental degradation of plastics and other pollutants, and medical treatment of food allergies. ...
Integrating dynamics into enzyme engineering
Claudèle Lemay-St-Denis and others
Protein Engineering, Design and Selection, Volume 35, 2022, gzac015, https://doi.org/10.1093/protein/gzac015
Enzyme engineering has become a widely adopted practice in research labs and industry. In parallel, the past decades have seen tremendous strides in characterizing the dynamics of proteins, using a growing array of methodologies. Importantly, links have been established between the dynamics of proteins and their function. ...
Engineering cellulases for conversion of lignocellulosic biomass
Yogesh B Chaudhari and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzad002, https://doi.org/10.1093/protein/gzad002
Lignocellulosic biomass is a renewable source of energy, chemicals and materials. Many applications of this resource require the depolymerization of one or more of its polymeric constituents. Efficient enzymatic depolymerization of cellulose to glucose by cellulases and accessory enzymes such as lytic polysaccharide ...
Cyan fluorescent proteins derived from mNeonGreen
Landon Zarowny and others
Protein Engineering, Design and Selection, Volume 35, 2022, gzac004, https://doi.org/10.1093/protein/gzac004
mNeonGreen, an engineered green fluorescent protein (GFP) derived from lancelet, is one of the most brightly fluorescent homologs of Aequorea victoria jellyfish GFP (avGFP) yet reported. In this work, we investigated whether this bright fluorescence might be retained in homologs of mNeonGreen with modified chromophore ...
Protein engineering approach to enhance activity assays of mono-ADP-ribosyltransferases through proximity
Albert Galera-Prat and others
Protein Engineering, Design and Selection, Volume 35, 2022, gzac006, https://doi.org/10.1093/protein/gzac006
Human mono-ADP-ribosylating PARP enzymes have been linked to several clinically relevant processes and many of these PARPs have been suggested as potential drug targets. Despite recent advances in the field, efforts to discover inhibitors have been hindered by the lack of tools to rapidly screen for high potency compounds ...

Special Collection: Enzyme Engineering

Enzyme design pioneer Steve Mayo: I was trying to capture the fundamental physics of the problem as a way to elucidate mechanisms
Roberto A Chica and Brett M Garabedian
Protein Engineering, Design and Selection, Volume 36, 2023, gzad004, https://doi.org/10.1093/protein/gzad004
Mayo: Absolutely! I don’t think there’s any question about that in my mind. If you look at what was published at the time, there was no software like ORBIT. Mayo: ORBIT allowed us to achieve the first fully automated design of a sequence that was shown to fold to the target structure, which was a ...
Engineering cellulases for conversion of lignocellulosic biomass
Yogesh B Chaudhari and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzad002, https://doi.org/10.1093/protein/gzad002
Lignocellulosic biomass is a renewable source of energy, chemicals and materials. Many applications of this resource require the depolymerization of one or more of its polymeric constituents. Efficient enzymatic depolymerization of cellulose to glucose by cellulases and accessory enzymes such as ...
Non-canonical amino acids as a tool for the thermal stabilization of enzymes
Tim Lugtenburg and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzad003, https://doi.org/10.1093/protein/gzad003
Biocatalysis has become a powerful alternative for green chemistry. Expanding the range of amino acids used in protein biosynthesis can improve industrially appealing properties such as enantioselectivity, activity and stability. This review will specifically delve into the thermal stability ...
Engineering the enzyme toolbox to tailor glycosylation in small molecule natural products and protein biologics
Sara Ouadhi and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzac010, https://doi.org/10.1093/protein/gzac010
Many glycosylated small molecule natural products and glycoprotein biologics are important in a broad range of therapeutic and industrial applications. The sugar moieties that decorate these compounds often show a profound impact on their biological functions, thus biocatalytic methods for ...
Integrating dynamics into enzyme engineering
Claudèle Lemay-St-Denis and others
Protein Engineering, Design and Selection, Volume 35, 2022, gzac015, https://doi.org/10.1093/protein/gzac015
Enzyme engineering has become a widely adopted practice in research labs and industry. In parallel, the past decades have seen tremendous strides in characterizing the dynamics of proteins, using a growing array of methodologies. Importantly, links have been established between the dynamics of ...
Engineering enzyme activity using an expanded amino acid alphabet
Zachary Birch-Price and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzac013, https://doi.org/10.1093/protein/gzac013
Enzyme design and engineering strategies are typically constrained by the limited size of nature’s genetic alphabet, comprised of only 20 canonical amino acids. In recent years, site-selective incorporation of non-canonical amino acids (ncAAs) via an expanded genetic code has emerged as a powerful ...
Data-driven enzyme engineering to identify function-enhancing enzymes
Yaoyukun Jiang and others
Protein Engineering, Design and Selection, Volume 36, 2023, gzac009, https://doi.org/10.1093/protein/gzac009
Identifying function-enhancing enzyme variants is a ‘holy grail’ challenge in protein science because it will allow researchers to expand the biocatalytic toolbox for late-stage functionalization of drug-like molecules, environmental degradation of plastics and other pollutants, and medical ...

Editor-in-Chief

Roberto Chica

Associate Editors

Feng Ni
Evamaria I. Petersen
Arne Skerra
Christopher Snow
Tim Whitehead

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The perfect home for your protein research

PEDS (Protein Engineering, Design, and Selection) publishes high-quality research and review articles relevant to the engineering, design, and selection of proteins. Rapid time to first decision, no page charges, and visibility of papers are just a few reasons why PEDS is the perfect home for your research. 

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Latest Special Collections & Issues

Special Collection: Enzyme Engineering

Protein Engineering, Design and Selection is pleased to publish a special collection of articles on enzyme engineering, a dynamic and interdisciplinary research field that aims to harness the potential of nature’s catalysts by optimizing their performance for a wide range of applications. In this special collection, you will explore the latest developments, strategies, and achievements in enzyme manipulation.  

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High-Impact Research Collection

Explore a collection of the most read and most cited articles making an impact in PEDS published within the past two years. This collection will be continuously updated with the journal's leading articles so be sure to revisit periodically to see what is being read and cited.

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Special Collections & Issues from PEDS

In addition to its regular issues, Protein Engineering, Design and Selection publishes Special Collections and Special Issues comprising of reviews and articles centered on various topics within the field of proteins. 

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