1-20 of 42
Authors: Bruce Rannala
Save search
Sort by
Journal Article

Estimation of species divergence times in presence of cross-species gene flow

PDF
George P Tiley and others
Systematic Biology, Volume 72, Issue 4, July 2023, Pages 820–836, https://doi.org/10.1093/sysbio/syad015
Published: 24 March 2023
Journal Article

An efficient exact algorithm for identifying hybrids using population genomic sequences

PDF
Sneha Chakraborty and Bruce Rannala
Genetics, Volume 223, Issue 4, April 2023, iyad011, https://doi.org/10.1093/genetics/iyad011
Published: 27 January 2023
Journal Article

PrioriTree: a utility for improving phylodynamic analyses in BEAST

PDF
Jiansi Gao and others
Bioinformatics, Volume 39, Issue 1, January 2023, btac849, https://doi.org/10.1093/bioinformatics/btac849
Published: 02 January 2023
Journal Article

Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent

PDF
Tomáš Flouri and others
Molecular Biology and Evolution, Volume 39, Issue 8, August 2022, msac161, https://doi.org/10.1093/molbev/msac161
Published: 30 July 2022
Journal Article

New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread

PDF
Jiansi Gao and others
Molecular Biology and Evolution, Volume 39, Issue 8, August 2022, msac159, https://doi.org/10.1093/molbev/msac159
Published: 21 July 2022
Journal Article

The Impact of Cross-Species Gene Flow on Species Tree Estimation

PDF
Xiyun Jiao and others
Systematic Biology, Volume 69, Issue 5, September 2020, Pages 830–847, https://doi.org/10.1093/sysbio/syaa001
Published: 24 January 2020
Journal Article

A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis

PDF
Tomáš Flouri and others
Molecular Biology and Evolution, Volume 37, Issue 4, April 2020, Pages 1211–1223, https://doi.org/10.1093/molbev/msz296
Published: 06 December 2019
Journal Article

Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent

PDF
Tomáš Flouri and others
Molecular Biology and Evolution, Volume 35, Issue 10, October 2018, Pages 2585–2593, https://doi.org/10.1093/molbev/msy147
Published: 23 July 2018
Journal Article

The Spectre of Too Many Species

PDF
Adam D Leaché and others
Systematic Biology, Volume 68, Issue 1, January 2019, Pages 168–181, https://doi.org/10.1093/sysbio/syy051
Published: 05 July 2018
Journal Article

Efficient Bayesian Species Tree Inference under the Multispecies Coalescent

PDF
Bruce Rannala and Ziheng Yang
Systematic Biology, Volume 66, Issue 5, September 2017, Pages 823–842, https://doi.org/10.1093/sysbio/syw119
Published: 06 March 2017
Journal Article

The art and science of species delimitation

PDF
Bruce Rannala
Current Zoology, Volume 61, Issue 5, 1 October 2015, Pages 846–853, https://doi.org/10.1093/czoolo/61.5.846
Published: 01 October 2015
Journal Article

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

PDF
Ziheng Yang and Bruce Rannala
Molecular Biology and Evolution, Volume 31, Issue 12, December 2014, Pages 3125–3135, https://doi.org/10.1093/molbev/msu279
Published: 01 October 2014
Journal Article

Bayesian Inference of Shared Recombination Hotspots Between Humans and Chimpanzees

PDF
Ying Wang and Bruce Rannala
Genetics, Volume 198, Issue 4, 1 December 2014, Pages 1621–1628, https://doi.org/10.1534/genetics.114.168377
Published: 26 September 2014
Journal Article

The Functional Significance of Common Polymorphisms in Zinc Finger Transcription Factors

PDF
Sarah H Lockwood and others
G3 Genes|Genomes|Genetics, Volume 4, Issue 9, 1 September 2014, Pages 1647–1655, https://doi.org/10.1534/g3.114.012195
Published: 01 September 2014
Journal Article

Bayesian Species Delimitation Can Be Robust to Guide-Tree Inference Errors

PDF
Chi Zhang and others
Systematic Biology, Volume 63, Issue 6, November 2014, Pages 993–1004, https://doi.org/10.1093/sysbio/syu052
Published: 05 August 2014
Journal Article

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

PDF
Adam D. Leaché and others
Systematic Biology, Volume 63, Issue 1, January 2014, Pages 17–30, https://doi.org/10.1093/sysbio/syt049
Published: 18 September 2013
Journal Article

Improved Reversible Jump Algorithms for Bayesian Species Delimitation

PDF
Bruce Rannala and Ziheng Yang
Genetics, Volume 194, Issue 1, 1 May 2013, Pages 245–253, https://doi.org/10.1534/genetics.112.149039
Published: 01 May 2013
Journal Article

Robustness of Compound Dirichlet Priors for Bayesian Inference of Branch Lengths

PDF
Chi Zhang and others
Systematic Biology, Volume 61, Issue 5, October 2012, Pages 779–784, https://doi.org/10.1093/sysbio/sys030
Published: 10 February 2012
Journal Article

Bayesian Population Genomic Inference of Crossing Over and Gene Conversion

PDF
Badri Padhukasahasram and Bruce Rannala
Genetics, Volume 189, Issue 2, 1 October 2011, Pages 607–619, https://doi.org/10.1534/genetics.111.130195
Published: 01 October 2011
Journal Article

Tail Paradox, Partial Identifiability, and Influential Priors in Bayesian Branch Length Inference

PDF
Bruce Rannala and others
Molecular Biology and Evolution, Volume 29, Issue 1, January 2012, Pages 325–335, https://doi.org/10.1093/molbev/msr210
Published: 02 September 2011