Advance articles
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Brief Report 25 April 2025
TissueViewer: A Web-Based Multiplexed Image Viewer
Bioinformatics, btaf246, https://doi.org/10.1093/bioinformatics/btaf246 -
Brief Report 25 April 2025
Popcorn: prediction of short coding and noncoding genomic sequences in prokaryotes
Bioinformatics, btaf250, https://doi.org/10.1093/bioinformatics/btaf250 -
Brief Report 25 April 2025
JAX-RNAfold: Scalable Differentiable Folding
Bioinformatics, btaf203, https://doi.org/10.1093/bioinformatics/btaf203 -
Brief Report 25 April 2025
Gencube: Centralized retrieval and integration of multi-omics resources from leading databases
Bioinformatics, btaf128, https://doi.org/10.1093/bioinformatics/btaf128 -
Research Article 24 April 2025
m2ST: Dual Multi-Scale Graph Clustering for Spatially Resolved Transcriptomics
Bioinformatics, btaf221, https://doi.org/10.1093/bioinformatics/btaf221 -
Research Article 24 April 2025
VSOT: Volume-Surface Optimization for Accurate Ultrastructure Analysis of Dendritic Spines
Bioinformatics, btaf220, https://doi.org/10.1093/bioinformatics/btaf220 -
Research Article 23 April 2025
De novo clustering of large long-read transcriptome datasets with isONclust3
Bioinformatics, btaf207, https://doi.org/10.1093/bioinformatics/btaf207 -
Research Article 23 April 2025
The Signed Two-Space Proximity Model for Learning Representations in Protein-Protein Interaction Networks
Bioinformatics, btaf204, https://doi.org/10.1093/bioinformatics/btaf204 -
Research Article 23 April 2025
Integration of multi-source gene interaction networks and omics data with graph attention networks to identify novel disease genes
Bioinformatics, btaf181, https://doi.org/10.1093/bioinformatics/btaf181 -
Research Article 21 April 2025
Functional protein biomarkers based on distributions of expression levels in single-cell imaging data
Bioinformatics, btaf182, https://doi.org/10.1093/bioinformatics/btaf182 -
Research Article 17 April 2025
CAFE: An Integrated Web App for High-Dimensional Analysis and Visualization in Spectral Flow Cytometry
Bioinformatics, btaf176, https://doi.org/10.1093/bioinformatics/btaf176 -
Research Article 16 April 2025
Colora: A Snakemake Workflow for Complete Chromosome-scale De Novo Genome Assembly
Bioinformatics, btaf175, https://doi.org/10.1093/bioinformatics/btaf175 -
Brief Report 16 April 2025
argNorm: normalization of antibiotic resistance gene annotations to the Antibiotic Resistance Ontology (ARO)
Bioinformatics, btaf173, https://doi.org/10.1093/bioinformatics/btaf173 -
Brief Report 15 April 2025
MS1FA: Shiny App for the Annotation of Redundant Features in Untargeted Metabolomics Datasets
Bioinformatics, btaf161, https://doi.org/10.1093/bioinformatics/btaf161 -
Research Article 15 April 2025
ProtNote: a multimodal method for protein-function annotation
Bioinformatics, btaf170, https://doi.org/10.1093/bioinformatics/btaf170 -
Research Article 15 April 2025
A Multi-View Graph Convolutional Network Framework Based on Adaptive Adjacency Matrix and Multi-Strategy Fusion Mechanism for Identifying Spatial Domains
Bioinformatics, btaf172, https://doi.org/10.1093/bioinformatics/btaf172 -
Research Article 15 April 2025
adverSCarial: assessing the vulnerability of single-cell RNA-sequencing classifiers to adversarial attacks
Bioinformatics, btaf168, https://doi.org/10.1093/bioinformatics/btaf168 -
Brief Report 15 April 2025
GSLab: Open-Source Platform for Advanced Phasor Analysis in Fluorescence Microscopy
Bioinformatics, btaf162, https://doi.org/10.1093/bioinformatics/btaf162 -
Research Article 12 April 2025
CONSTRUCT: an algorithmic tool for identifying functional or structurally important regions in protein tertiary structure
Bioinformatics, btaf166, https://doi.org/10.1093/bioinformatics/btaf166 -
Brief Report 12 April 2025
Polaris: Polarization of ancestral and derived polymorphic alleles for inferences of extended haplotype homozygosity in human populations
Bioinformatics, btaf171, https://doi.org/10.1093/bioinformatics/btaf171 -
Research Article 12 April 2025
Charting the structure-sequence landscape of light chain amyloids
Bioinformatics, btaf167, https://doi.org/10.1093/bioinformatics/btaf167 -
Research Article 11 April 2025
GeOKG: Geometry-aware knowledge graph embedding for Gene Ontology and genes
Bioinformatics, btaf160, https://doi.org/10.1093/bioinformatics/btaf160 -
Research Article 9 April 2025
Finding Antibodies in Cryo-EM maps with CrAI
Bioinformatics, btaf157, https://doi.org/10.1093/bioinformatics/btaf157
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Research Article 8 April 2025
Gradient matching accelerates mixed-effects inference for biochemical networks
Bioinformatics, btaf154, https://doi.org/10.1093/bioinformatics/btaf154 -
Research Article 8 April 2025
ROICellTrack: A deep learning framework for integrating cellular imaging modalities in subcellular spatial transcriptomic profiling of tumor tissues
Bioinformatics, btaf152, https://doi.org/10.1093/bioinformatics/btaf152 -
Research Article 7 April 2025
Topology-Driven Negative Sampling Enhances Generalizability in Protein-Protein Interaction Prediction
Bioinformatics, btaf148, https://doi.org/10.1093/bioinformatics/btaf148 -
Research Article 3 April 2025
AlertGS: Determining alerts for gene sets
Bioinformatics, btaf133, https://doi.org/10.1093/bioinformatics/btaf133 -
Research Article 2 April 2025
OLTA: Optimizing bait seLection for TArgeted sequencing
Bioinformatics, btaf146, https://doi.org/10.1093/bioinformatics/btaf146 -
Brief Report 31 March 2025
XPRS: A Tool for Interpretable and Explainable Polygenic Risk Score
Bioinformatics, btaf143, https://doi.org/10.1093/bioinformatics/btaf143 -
Research Article 27 March 2025
MNMO: Discover driver genes from a Multi-Omics data based multi-layer network
Bioinformatics, btaf134, https://doi.org/10.1093/bioinformatics/btaf134 -
Research Article 27 March 2025
scMUSCL: Multi-Source Transfer Learning for Clustering scRNA-seq Data
Bioinformatics, btaf137, https://doi.org/10.1093/bioinformatics/btaf137 -
Research Article 26 March 2025
Benchmarking algorithms for spatially variable gene identification in spatial transcriptomics
Bioinformatics, btaf131, https://doi.org/10.1093/bioinformatics/btaf131 -
Research Article 24 March 2025
Topology-based metrics for finding the optimal sparsity in gene regulatory network inference
Bioinformatics, btaf120, https://doi.org/10.1093/bioinformatics/btaf120 -
Research Article 1 March 2025
EPIPDLF: a pre-trained deep learning framework for predicting enhancer-promoter interactions
Bioinformatics, btae716, https://doi.org/10.1093/bioinformatics/btae716 -
Research Article 3 October 2024
MVSF-AB: Accurate antibody-antigen binding affinity prediction via multi-view sequence feature learning
Bioinformatics, btae579, https://doi.org/10.1093/bioinformatics/btae579
