Advance articles
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Corrected Proof
Research Article 20 August 2021
CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles
Bioinformatics, btaa742, https://doi.org/10.1093/bioinformatics/btaa742Published: 20 August 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 2 April 2021
AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models
Bioinformatics, btab227, https://doi.org/10.1093/bioinformatics/btab227Published: 2 April 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 1 April 2021
Fast identification of differential distributions in single-cell RNA-sequencing data with waddR
Bioinformatics, btab226, https://doi.org/10.1093/bioinformatics/btab226Published: 1 April 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 1 April 2021
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
Bioinformatics, btab222, https://doi.org/10.1093/bioinformatics/btab222Published: 1 April 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 1 April 2021
ASHLEYS: automated quality control for single-cell Strand-seq data
Bioinformatics, btab221, https://doi.org/10.1093/bioinformatics/btab221Published: 1 April 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 1 April 2021
A critical assessment of gene catalogs for metagenomic analysis
Bioinformatics, btab216, https://doi.org/10.1093/bioinformatics/btab216Published: 1 April 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 1 April 2021
Gene Tracer: A smart, interactive, voice-controlled Alexa skill for gene information retrieval and browsing, mutation annotation, and network visualization
Bioinformatics, btab107, https://doi.org/10.1093/bioinformatics/btab107Published: 1 April 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 31 March 2021
Protein Contact Map Refinement for Improving Structure Prediction Using Generative Adversarial Networks
Sai Raghavendra Maddhuri Venkata Subramaniya, Genki Terashi, Aashish Jain, Yuki Kagaya, Daisuke KiharaBioinformatics, btab220, https://doi.org/10.1093/bioinformatics/btab220Published: 31 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 31 March 2021
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches
Bioinformatics, btab219, https://doi.org/10.1093/bioinformatics/btab219Published: 31 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 31 March 2021
PrecisionProDB: improving the proteomics performance for precision medicine
Bioinformatics, btab218, https://doi.org/10.1093/bioinformatics/btab218Published: 31 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 31 March 2021
VCFShark: how to squeeze a VCF file
Bioinformatics, btab211, https://doi.org/10.1093/bioinformatics/btab211Published: 31 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 28 March 2021
ShinyCell: Simple and sharable visualisation of single-cell gene expression data
Bioinformatics, btab209, https://doi.org/10.1093/bioinformatics/btab209Published: 28 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 28 March 2021
EPS: Automated Feature Selection in Case-Control Studies using Extreme Pseudo-Sampling
Bioinformatics, btab214, https://doi.org/10.1093/bioinformatics/btab214Published: 28 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 28 March 2021
L2,1-norm regularized multivariate regression model with applications to genomic prediction
Bioinformatics, btab212, https://doi.org/10.1093/bioinformatics/btab212Published: 28 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 27 March 2021
MaveRegistry: a collaboration platform for multiplexed assays of variant effect
Bioinformatics, btab215, https://doi.org/10.1093/bioinformatics/btab215Published: 27 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 27 March 2021
ZEAL: Protein structure alignment based on shape similarity
Bioinformatics, btab205, https://doi.org/10.1093/bioinformatics/btab205Published: 27 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 27 March 2021
FUNGI: Fusion Gene Integration Toolset
Bioinformatics, btab206, https://doi.org/10.1093/bioinformatics/btab206Published: 27 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 27 March 2021
Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines
Bioinformatics, btab208, https://doi.org/10.1093/bioinformatics/btab208Published: 27 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 27 March 2021
Generalised Read-Across prediction using genra-py
Bioinformatics, btab210, https://doi.org/10.1093/bioinformatics/btab210Published: 27 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 26 March 2021
SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization
Bioinformatics, btab207, https://doi.org/10.1093/bioinformatics/btab207Published: 26 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 26 March 2021
FraGAT: a fragment-oriented multi-scale graph attention model for molecular property prediction
Bioinformatics, btab195, https://doi.org/10.1093/bioinformatics/btab195Published: 26 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 26 March 2021
A Convolutional Neural Network and Graph Convolutional Network Based Method for Predicting the Classification of Anatomical Therapeutic Chemicals
Bioinformatics, btab204, https://doi.org/10.1093/bioinformatics/btab204Published: 26 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 24 March 2021
STREME: Accurate and versatile sequence motif discovery
Bioinformatics, btab203, https://doi.org/10.1093/bioinformatics/btab203Published: 24 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 24 March 2021
Quantification of cell behaviors and computational modelling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis
Bioinformatics, btab201, https://doi.org/10.1093/bioinformatics/btab201Published: 24 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 24 March 2021
PecanPy: a fast, efficient, and parallelized Python implementation of node2vec
Bioinformatics, btab202, https://doi.org/10.1093/bioinformatics/btab202Published: 24 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 24 March 2021
muCNV: Genotyping Structural Variants for Population-level Sequencing
Bioinformatics, btab199, https://doi.org/10.1093/bioinformatics/btab199Published: 24 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 24 March 2021
HiG2Vec: Hierarchical Representations of Gene Ontology and Genes in the Poincaré Ball
Bioinformatics, btab193, https://doi.org/10.1093/bioinformatics/btab193Published: 24 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 23 March 2021
TALE: Transformer-based protein function Annotation with joint sequence–Label Embedding
Bioinformatics, btab198, https://doi.org/10.1093/bioinformatics/btab198Published: 23 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 23 March 2021
KEC: Unique sequence search by K-mer exclusion
Bioinformatics, btab196, https://doi.org/10.1093/bioinformatics/btab196Published: 23 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 23 March 2021
Probabilistic Thermodynamic Analysis of Metabolic Networks
Bioinformatics, btab194, https://doi.org/10.1093/bioinformatics/btab194Published: 23 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 20 March 2021
The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes
Bioinformatics, btab189, https://doi.org/10.1093/bioinformatics/btab189Published: 20 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 20 March 2021
PoseFilter: a PyMOL plugin for filtering and analyzing small molecule docking in symmetric binding sites
Bioinformatics, btab188, https://doi.org/10.1093/bioinformatics/btab188Published: 20 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 19 March 2021
Drug repurposing against breast cancer by integrating drug-exposure expression profiles and drug-drug links based on graph neural network
Bioinformatics, btab191, https://doi.org/10.1093/bioinformatics/btab191Published: 19 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 18 March 2021
LocusZoom.js: interactive and embeddable visualization of genetic association study results
Bioinformatics, btab186, https://doi.org/10.1093/bioinformatics/btab186Published: 18 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 18 March 2021
Fast and sensitive taxonomic assignment to metagenomic contigs
Bioinformatics, btab184, https://doi.org/10.1093/bioinformatics/btab184Published: 18 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Research Article 17 March 2021
GPDBN: deep bilinear network integrating both genomic data and pathological images for breast cancer prognosis prediction
Bioinformatics, btab185, https://doi.org/10.1093/bioinformatics/btab185Published: 17 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 17 March 2021
Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights
Bioinformatics, btab175, https://doi.org/10.1093/bioinformatics/btab175Published: 17 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 17 March 2021
Multiscale part mutual information for quantifying nonlinear direct associations in networks
Bioinformatics, btab182, https://doi.org/10.1093/bioinformatics/btab182Published: 17 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 17 March 2021
Tumor IsomiR Encyclopedia (TIE): a pancancer database of miRNA isoforms
Bioinformatics, btab172, https://doi.org/10.1093/bioinformatics/btab172Published: 17 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 16 March 2021
Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing
Bioinformatics, btab181, https://doi.org/10.1093/bioinformatics/btab181Published: 16 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 16 March 2021
Queueing theory model of Krebs cycle
Bioinformatics, btab177, https://doi.org/10.1093/bioinformatics/btab177Published: 16 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 15 March 2021
Ribo-ODDR: Oligo design pipeline for experiment-specific rRNA depletion in ribo-seq
Bioinformatics, btab171, https://doi.org/10.1093/bioinformatics/btab171Published: 15 March 2021 Section: Original Paper -
Corrected Proof
Research Article 15 March 2021
PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples
Bioinformatics, btab178, https://doi.org/10.1093/bioinformatics/btab178Published: 15 March 2021 Section: Original Paper -
Corrected Proof
Research Article 15 March 2021
MUFFIN: multi-scale feature fusion for drug–drug interaction prediction
Bioinformatics, btab169, https://doi.org/10.1093/bioinformatics/btab169Published: 15 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 15 March 2021
BART3D: inferring transcriptional regulators associated with differential chromatin interactions from Hi-C data
Bioinformatics, btab173, https://doi.org/10.1093/bioinformatics/btab173Published: 15 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 15 March 2021
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations
Bioinformatics, btab176, https://doi.org/10.1093/bioinformatics/btab176Published: 15 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 15 March 2021
Integrative transcription start site identification with iTiSS
Bioinformatics, btab170, https://doi.org/10.1093/bioinformatics/btab170Published: 15 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 14 March 2021
HCMMCNVs: hierarchical clustering mixture model of copy number variants detection using whole exome sequencing technology
Bioinformatics, btab183, https://doi.org/10.1093/bioinformatics/btab183Published: 14 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 14 March 2021
ExperimentSubset: an R package to manage subsets of Bioconductor Experiment objects
Bioinformatics, btab179, https://doi.org/10.1093/bioinformatics/btab179Published: 14 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Brief Report 14 March 2021
POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules
Bioinformatics, btab180, https://doi.org/10.1093/bioinformatics/btab180Published: 14 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 14 March 2021
Polypharmacy Side effect Prediction with Enhanced Interpretability Based on Graph Feature Attention Network
Bioinformatics, btab174, https://doi.org/10.1093/bioinformatics/btab174Published: 14 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 11 March 2021
Improved RNA Secondary Structure and Tertiary Base-pairing Prediction Using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
Bioinformatics, btab165, https://doi.org/10.1093/bioinformatics/btab165Published: 11 March 2021 Section: Original Paper -
Corrected Proof
Research Article 11 March 2021
sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling
Bioinformatics, btab164, https://doi.org/10.1093/bioinformatics/btab164Published: 11 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 11 March 2021
LSTrAP-Kingdom: an automated pipeline to generate annotated gene expression atlases for kingdoms of life
Bioinformatics, btab168, https://doi.org/10.1093/bioinformatics/btab168Published: 11 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 11 March 2021
DCI: learning causal differences between gene regulatory networks
Bioinformatics, btab167, https://doi.org/10.1093/bioinformatics/btab167Published: 11 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 11 March 2021
TIGER: inferring DNA replication timing from whole-genome sequence data
Bioinformatics, btab166, https://doi.org/10.1093/bioinformatics/btab166Published: 11 March 2021 Section: Original Paper -
Corrected Proof
Research Article 10 March 2021
Novel approach for parallelizing pairwise comparison problems as applied to detecting segments identical by decent in whole-genome data
Bioinformatics, btab084, https://doi.org/10.1093/bioinformatics/btab084Published: 10 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 10 March 2021
Machine learning optimization of peptides for presentation by class II MHCs
Bioinformatics, btab131, https://doi.org/10.1093/bioinformatics/btab131Published: 10 March 2021 Section: Original Paper -
Accepted Manuscript
Research Article 10 March 2021
Knowledge Enhanced LSTM for Coreference Resolution on Biomedical Texts
Bioinformatics, btab153, https://doi.org/10.1093/bioinformatics/btab153Published: 10 March 2021 Section: Original Paper -
Corrected Proof
Correction 10 March 2021
Erratum to: EpiGraphDB: a database and data mining platform for health data science
Bioinformatics, btab104, https://doi.org/10.1093/bioinformatics/btab104Published: 10 March 2021 Section: Erratum -
Accepted Manuscript
Research Article 9 March 2021
COVID-19: disease pathways and gene expression changes predict methylprednisolone can improve outcome in severe cases
Bioinformatics, btab163, https://doi.org/10.1093/bioinformatics/btab163Published: 9 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 8 March 2021
FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids
Bioinformatics, btab160, https://doi.org/10.1093/bioinformatics/btab160Published: 8 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Research Article 8 March 2021
MixTwice: large-scale hypothesis testing for peptide arrays by variance mixing
Bioinformatics, btab162, https://doi.org/10.1093/bioinformatics/btab162Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 8 March 2021
Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies
Bioinformatics, btab159, https://doi.org/10.1093/bioinformatics/btab159Published: 8 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 8 March 2021
Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud
Bioinformatics, btab161, https://doi.org/10.1093/bioinformatics/btab161Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 8 March 2021
Megadepth: efficient coverage quantification for BigWigs and BAMs
Bioinformatics, btab152, https://doi.org/10.1093/bioinformatics/btab152Published: 8 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 8 March 2021
Super-delta2: An Enhanced Differential Expression Analysis Procedure for Multi-Group Comparisons of RNA-seq Data
Bioinformatics, btab155, https://doi.org/10.1093/bioinformatics/btab155Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Research Article 8 March 2021
Granger-causal testing for irregularly sampled time series with application to nitrogen signalling in Arabidopsis
Bioinformatics, btab126, https://doi.org/10.1093/bioinformatics/btab126Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Research Article 8 March 2021
Compact and evenly distributed k-mer binning for genomic sequences
Bioinformatics, btab156, https://doi.org/10.1093/bioinformatics/btab156Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Research Article 8 March 2021
Protein interaction interface region prediction by geometric deep learning
Bioinformatics, btab154, https://doi.org/10.1093/bioinformatics/btab154Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Research Article 8 March 2021
Conditional canonical correlation estimation based on covariates with random forests
Bioinformatics, btab158, https://doi.org/10.1093/bioinformatics/btab158Published: 8 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 5 March 2021
pgainsim: an R-package to assess the mode of inheritance for quantitative trait loci in GWAS
Bioinformatics, btab150, https://doi.org/10.1093/bioinformatics/btab150Published: 5 March 2021 Section: APPLICATIONS NOTE > Genetics and population analysis -
Accepted Manuscript
Research Article 4 March 2021
KibioR & Kibio: a new architecture for next-generation data querying and sharing in big biology
Régis Ongaro-Carcy, Marie-Pier Scott-Boyer, Adrien Dessemond, François Belleau, Mickael Leclercq ...Bioinformatics, btab157, https://doi.org/10.1093/bioinformatics/btab157Published: 4 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 4 March 2021
QuArray: an application for tissue array whole slide image export and signal analysis
Bioinformatics, btab119, https://doi.org/10.1093/bioinformatics/btab119Published: 4 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 3 March 2021
Bipartite graph-based approach for clustering of cell lines by gene expression-drug response associations
Bioinformatics, btab143, https://doi.org/10.1093/bioinformatics/btab143Published: 3 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 3 March 2021
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types
Bioinformatics, btab148, https://doi.org/10.1093/bioinformatics/btab148Published: 3 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Brief Report 3 March 2021
Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition
Bioinformatics, btab149, https://doi.org/10.1093/bioinformatics/btab149Published: 3 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Research Article 3 March 2021
Integrative survival analysis of breast cancer with gene expression and DNA methylation data
Bioinformatics, btab140, https://doi.org/10.1093/bioinformatics/btab140Published: 3 March 2021 Section: Original Paper -
Corrected Proof
Research Article 2 March 2021
ClassifyTE: a stacking-based prediction of hierarchical classification of transposable elements
Bioinformatics, btab146, https://doi.org/10.1093/bioinformatics/btab146Published: 2 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 2 March 2021
multiTFA: a python package for multi-variate thermodynamics-based flux analysis
Bioinformatics, btab151, https://doi.org/10.1093/bioinformatics/btab151Published: 2 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 2 March 2021
DeepViral: prediction of novel virus–host interactions from protein sequences and infectious disease phenotypes
Bioinformatics, btab147, https://doi.org/10.1093/bioinformatics/btab147Published: 2 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 2 March 2021
DeepS: a web server for image optical sectioning and super resolution microscopy based on a deep learning framework
Bioinformatics, btab144, https://doi.org/10.1093/bioinformatics/btab144Published: 2 March 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Research Article 2 March 2021
Biphasic regulation of transcriptional surge generated by the gene feedback loop in a two-component system
Bioinformatics, btab138, https://doi.org/10.1093/bioinformatics/btab138Published: 2 March 2021 Section: Original Paper -
Corrected Proof
Research Article 2 March 2021
ASpli: integrative analysis of splicing landscapes through RNA-Seq assays
Bioinformatics, btab141, https://doi.org/10.1093/bioinformatics/btab141Published: 2 March 2021 Section: Original Paper -
Corrected Proof
Brief Report 2 March 2021
RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts
Bioinformatics, btab135, https://doi.org/10.1093/bioinformatics/btab135Published: 2 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 2 March 2021
NIBNA: A network-based node importance approach for identifying breast cancer drivers
Bioinformatics, btab145, https://doi.org/10.1093/bioinformatics/btab145Published: 2 March 2021 Section: Original Paper -
Accepted Manuscript
Brief Report 2 March 2021
Bali-Phy version 3: Model-based co-estimation of alignment and phylogeny
Bioinformatics, btab129, https://doi.org/10.1093/bioinformatics/btab129Published: 2 March 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Letter 2 March 2021
Normalization of single-cell RNA-seq counts by log(x + 1) or log(1 + x)
Bioinformatics, btab085, https://doi.org/10.1093/bioinformatics/btab085Published: 2 March 2021 Section: Letter to the Editor -
Corrected Proof
Research Article 1 March 2021
Gene-set integrative analysis of multi-omics data using tensor-based association test
Bioinformatics, btab125, https://doi.org/10.1093/bioinformatics/btab125Published: 1 March 2021 Section: Original Paper -
Corrected Proof
Research Article 27 February 2021
Blinking statistics and molecular counting in direct stochastic reconstruction microscopy (dSTORM)
Bioinformatics, btab136, https://doi.org/10.1093/bioinformatics/btab136Published: 27 February 2021 Section: Original Paper -
Accepted Manuscript
Research Article 27 February 2021
CCmed: Cross-condition mediation analysis for identifying replicable trans-associations mediated by cis-gene expression
Bioinformatics, btab139, https://doi.org/10.1093/bioinformatics/btab139Published: 27 February 2021 Section: Original Paper -
Corrected Proof
Brief Report 27 February 2021
ASimulatoR: splice-aware RNA-Seq data simulation
Bioinformatics, btab142, https://doi.org/10.1093/bioinformatics/btab142Published: 27 February 2021 Section: APPLICATIONS NOTE -
Corrected Proof
Research Article 26 February 2021
Proteo-chemometrics interaction fingerprints of protein–ligand complexes predict binding affinity
Bioinformatics, btab132, https://doi.org/10.1093/bioinformatics/btab132Published: 26 February 2021 Section: Original Paper -
Corrected Proof
Research Article 26 February 2021
BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides
Phasit Charoenkwan, Chanin Nantasenamat, Md Mehedi Hasan, Balachandran Manavalan, Watshara ShoombuatongBioinformatics, btab133, https://doi.org/10.1093/bioinformatics/btab133Published: 26 February 2021 Section: Original Paper -
Corrected Proof
Brief Report 26 February 2021
HeteroGGM: an R package for Gaussian graphical model-based heterogeneity analysis
Bioinformatics, btab134, https://doi.org/10.1093/bioinformatics/btab134Published: 26 February 2021 Section: APPLICATIONS NOTE -
Accepted Manuscript
Research Article 26 February 2021
A Modelling Framework for Embedding-based Predictions for Compound-Viral Protein Activity
Bioinformatics, btab130, https://doi.org/10.1093/bioinformatics/btab130Published: 26 February 2021 Section: Original Paper -
Accepted Manuscript
Research Article 25 February 2021
Privacy-Preserving and Robust Watermarking on Sequential Genome Data using Belief Propagation and Local Differential Privacy
Bioinformatics, btab128, https://doi.org/10.1093/bioinformatics/btab128Published: 25 February 2021 Section: Original Paper -
Accepted Manuscript
Research Article 25 February 2021
lncLocator 2.0: a cell-line-specific subcellular localization predictor for long non-coding RNAs with interpretable deep learning
Bioinformatics, btab127, https://doi.org/10.1093/bioinformatics/btab127Published: 25 February 2021 Section: Original Paper -
Corrected Proof
Research Article 24 February 2021
BloodGen3Module: blood transcriptional module repertoire analysis and visualization using R
Bioinformatics, btab121, https://doi.org/10.1093/bioinformatics/btab121Published: 24 February 2021 Section: Original Paper -
Accepted Manuscript
Research Article 24 February 2021
d-PBWT: dynamic positional Burrows-Wheeler transform
Bioinformatics, btab117, https://doi.org/10.1093/bioinformatics/btab117Published: 24 February 2021 Section: Original Paper