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Journal Article
Published: 20 August 2021
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Published: 20 August 2021
Fig. 1. Clustering based on local density neighborhoods. We created a synthetic dataset that contains four croissant-shaped clusters of 500 elements each with different scaling as well as a cluster in the shape of a cross with 4000 elements and added Gaussian noise. ( a ) On the left, the cardinality of the
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Published: 20 August 2021
Fig. 2. Local neighborhood density analysis for automated center and cluster determination. For each panel, the cardinality of the core of each point as detailed in the Section 2 is shown on the left. The resulting clusters are shown on the right, with clusters in different colors and identified outliers as
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Published: 20 August 2021
Fig. 3. Utilizing Gaussian cluster properties to extract centers as key biological states of the COQ9 membrane protein. ( a ) COQ9 and its associated features, which include an internal angle θ and its distance to the membrane d (left). Cluster centers are shown on the right side of the panel. ( b ) Eve
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Published: 20 August 2021
Fig. 4. Identification of different opening states of the allosteric cryptic pocket in TEM1 β-lactamase. ( a ) apo and Holo structures (left and right, respectively). Allosteric inhibitors are shown in gray and white. Features following helical opening include the distance between Cα atoms of N276 and L
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Published: 20 August 2021
Fig. 5. Classification and frequency estimation of APP dimerization motifs in the plasma membrane. ( a ) The two known dimerization motifs of the transmembrane helix of APP. Membrane is depicted with gray spheres, the G 700 G 704 G 708 motif with teal spheres and the G 709 A 713 motif with gold spheres. (
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Published: 02 April 2021
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Published: 01 April 2021
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Published: 01 April 2021
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Published: 01 April 2021
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Published: 01 April 2021
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Published: 01 April 2021
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Published: 31 March 2021
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Published: 31 March 2021
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Published: 31 March 2021
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Published: 31 March 2021
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Published: 28 March 2021
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Published: 28 March 2021
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Published: 28 March 2021
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Published: 27 March 2021