Abstract

Summary: We describe the JigCell Model Builder (JCMB), a tool for creating biochemical reaction network models. JCMB is designed for ease of use and its interface uses the standard spreadsheet metaphor. The JigCell Run Manager (JCRM) is a tool for organizing the large collections of simulation runs typically required by reaction network modeling activities.

Availability: JCMB and JCRM are part of the JigCell suite available at http://jigcell.biol.vt.edu

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Author notes

1Department of Computer Science and 2Department of Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0106, USA

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