Volume 21, Issue suppl_2
September 2005
ISSN 1367-4803
EISSN 1367-4811
Issue navigation
Volume 21, Issue suppl_2, September 2005
ECCB/JBI'05 PROCEEDINGS. Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28-October 1, 2005
EDITORIAL
ECCB/JBI 2005
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii1–ii2, https://doi.org/10.1093/bioinformatics/bti1145
Author Index
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Page ii270, https://doi.org/10.1093/bioinformatics/bti1147
ORIGINAL PAPERS
GENES AND GENOMES
Computational discovery of transcriptional regulatory rules
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii101–ii107, https://doi.org/10.1093/bioinformatics/bti1117
MICROARRAYS
Data-adaptive test statistics for microarray data
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii108–ii114, https://doi.org/10.1093/bioinformatics/bti1119
Identifying active transcription factors and kinases from expression data using pathway queries
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii115–ii122, https://doi.org/10.1093/bioinformatics/bti1120
Analyzing microarray data using quantitative association rules
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii123–ii129, https://doi.org/10.1093/bioinformatics/bti1121
CONTRIBUTED SESSIONS
A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii13–ii18, https://doi.org/10.1093/bioinformatics/bti1101
MICROARRAYS
A fully Bayesian model to cluster gene-expression profiles
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii130–ii136, https://doi.org/10.1093/bioinformatics/bti1122
Fusing microarray experiments with multivariate regression
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii137–ii143, https://doi.org/10.1093/bioinformatics/bti1123
PHYLOGENETICS
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii144–ii150, https://doi.org/10.1093/bioinformatics/bti1124
A Gamma mixture model better accounts for among site rate heterogeneity
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii151–ii158, https://doi.org/10.1093/bioinformatics/bti1125
Computing recombination networks from binary sequences
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii159–ii165, https://doi.org/10.1093/bioinformatics/bti1126
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii166–ii172, https://doi.org/10.1093/bioinformatics/bti1127
SNPS
Recovering haplotype structure through recombination and gene conversion
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii173–ii179, https://doi.org/10.1093/bioinformatics/bti1128
Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scans
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii180–ii181, https://doi.org/10.1093/bioinformatics/bti1118
Model-P: a basecalling method for resequencing microarrays of diploid samples
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii182–ii189, https://doi.org/10.1093/bioinformatics/bti1129
DATABASES
Predicting post-synaptic activity in proteins with data mining
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii19–ii25, https://doi.org/10.1093/bioinformatics/bti1102
SYSTEMS BIOLOGY
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii190–ii196, https://doi.org/10.1093/bioinformatics/bti1130
Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clustering
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii197–ii203, https://doi.org/10.1093/bioinformatics/bti1131
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii204–ii205, https://doi.org/10.1093/bioinformatics/bti1132
Estimating gene regulatory networks and protein–protein interactions of Saccharomyces cerevisiae from multiple genome-wide data
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii206–ii212, https://doi.org/10.1093/bioinformatics/bti1133
Knowledge-based framework for hypothesis formation in biochemical networks
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii213–ii219, https://doi.org/10.1093/bioinformatics/bti1134
Decomposing protein networks into domain–domain interactions
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii220–ii221, https://doi.org/10.1093/bioinformatics/bti1135
Horizontal gene transfer depends on gene content of the host
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii222–ii223, https://doi.org/10.1093/bioinformatics/bti1136
ALGORITHMS
Growing Bayesian network models of gene networks from seed genes
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii224–ii229, https://doi.org/10.1093/bioinformatics/bti1137
Reconsidering complete search algorithms for protein backbone NMR assignment
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii230–ii236, https://doi.org/10.1093/bioinformatics/bti1138
RNA secondary structural alignment with conditional random fields
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii237–ii242, https://doi.org/10.1093/bioinformatics/bti1139
Fast maximum-likelihood refinement of electron microscopy images
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii243–ii244, https://doi.org/10.1093/bioinformatics/bti1140
TEXT MINING
A probabilistic model for mining implicit ‘chemical compound–gene’ relations from literature
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii245–ii251, https://doi.org/10.1093/bioinformatics/bti1141
Implementing the iHOP concept for navigation of biomedical literature
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii252–ii258, https://doi.org/10.1093/bioinformatics/bti1142
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii259–ii267, https://doi.org/10.1093/bioinformatics/bti1143
DATABASES
DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii26–ii30, https://doi.org/10.1093/bioinformatics/bti1103
TEXT MINING
Web servicing the biological office
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii268–ii269, https://doi.org/10.1093/bioinformatics/bti1144
EDITORIAL
ECCB/JBI 2005 Organization
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii3–ii5, https://doi.org/10.1093/bioinformatics/bti1146
ORIGINAL PAPERS
DATABASES
Design of a description language for generating wrapper to collect biological data
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii31–ii32, https://doi.org/10.1093/bioinformatics/bti1104
A query language for biological networks
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii33–ii39, https://doi.org/10.1093/bioinformatics/bti1105
Adding Some SPICE to DAS
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii40–ii41, https://doi.org/10.1093/bioinformatics/bti1106
SIMAP—The similarity matrix of proteins
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii42–ii46, https://doi.org/10.1093/bioinformatics/bti1107
PROTEIN STRUCTURE AND FUNCTION
ARTS: alignment of RNA tertiary structures
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii47–ii53, https://doi.org/10.1093/bioinformatics/bti1108
Predicting protein stability changes from sequences using support vector machines
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii54–ii58, https://doi.org/10.1093/bioinformatics/bti1109
Fast protein classification with multiple networks
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii59–ii65, https://doi.org/10.1093/bioinformatics/bti1110
Less is more: towards an optimal universal description of protein folds
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii66–ii71, https://doi.org/10.1093/bioinformatics/bti1111
CONTRIBUTED SESSIONS
Augmented cell-graphs for automated cancer diagnosis
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii7–ii12, https://doi.org/10.1093/bioinformatics/bti1100
PROTEIN STRUCTURE AND FUNCTION
Evaluating the usefulness of protein structure models for molecular replacement
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii72–ii76, https://doi.org/10.1093/bioinformatics/bti1112
GENES AND GENOMES
Non-coding RNAs in Ciona intestinalis
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii77–ii78, https://doi.org/10.1093/bioinformatics/bti1113
The fragment assembly string graph
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii79–ii85, https://doi.org/10.1093/bioinformatics/bti1114
Finding exact optimal motifs in matrix representation by partitioning
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii86–ii92, https://doi.org/10.1093/bioinformatics/bti1115
Prediction of regulatory modules comprising microRNAs and target genes
Bioinformatics, Volume 21, Issue suppl_2, September 2005, Pages ii93–ii100, https://doi.org/10.1093/bioinformatics/bti1116
