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OTHER BIOINFORMATICS APPLICATIONS AND METHODS
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Journal Article

Probabilistic retrieval and visualization of biologically relevant microarray experiments

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José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski
Bioinformatics, Volume 25, Issue 12, 15 June 2009, Pages i145–i153, https://doi.org/10.1093/bioinformatics/btp215
Published: 27 May 2009
Journal Article

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

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Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
Bioinformatics, Volume 25, Issue 12, 15 June 2009, Pages i179–i186, https://doi.org/10.1093/bioinformatics/btp223
Published: 27 May 2009
Journal Article

A general computational method for robustness analysis with applications to synthetic gene networks

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Aurélien Rizk, Gregory Batt, François Fages, Sylvain Soliman
Bioinformatics, Volume 25, Issue 12, 15 June 2009, Pages i169–i178, https://doi.org/10.1093/bioinformatics/btp200
Published: 27 May 2009
Journal Article

Fewer permutations, more accurate P -values

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Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich
Bioinformatics, Volume 25, Issue 12, 15 June 2009, Pages i161–i168, https://doi.org/10.1093/bioinformatics/btp211
Published: 27 May 2009
Journal Article

Proteome coverage prediction with infinite Markov models

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Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann
Bioinformatics, Volume 25, Issue 12, 15 June 2009, Pages i154–i160, https://doi.org/10.1093/bioinformatics/btp233
Published: 27 May 2009
Journal Article

Assessing the functional structure of genomic data

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C. Huttenhower, O.G. Troyanskaya
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i330–i338, https://doi.org/10.1093/bioinformatics/btn160
Published: 01 July 2008
Journal Article

A maximum common substructure-based algorithm for searching and predicting drug-like compounds

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Yiqun Cao, Tao Jiang, Thomas Girke
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i366–i374, https://doi.org/10.1093/bioinformatics/btn186
Published: 01 July 2008
Journal Article

Classification of arrayCGH data using fused SVM

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Franck Rapaport, Emmanuel Barillot, Jean-Philippe Vert
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i375–i382, https://doi.org/10.1093/bioinformatics/btn188
Published: 01 July 2008
Journal Article

Matching isotopic distributions from metabolically labeled samples

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Sean McIlwain, David Page, Edward L. Huttlin, Michael R. Sussman
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i339–i347, https://doi.org/10.1093/bioinformatics/btn190
Published: 01 July 2008
Journal Article

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry

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Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i416–i423, https://doi.org/10.1093/bioinformatics/btn184
Published: 01 July 2008
Journal Article

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification

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Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i348–i356, https://doi.org/10.1093/bioinformatics/btn189
Published: 01 July 2008
Journal Article

BLASTing small molecules—statistics and extreme statistics of chemical similarity scores

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Pierre Baldi, Ryan W. Benz
Bioinformatics, Volume 24, Issue 13, 1 July 2008, Pages i357–i365, https://doi.org/10.1093/bioinformatics/btn187
Published: 01 July 2008