Volume 7, Issue 1, 2022
Opinion Article
Introducing stimulogenetics, unraveling pertinent semantic ambiguity, and determining clinical relevance among novel neuromodulation strategies
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac019, https://doi.org/10.1093/biomethods/bpac019
Methods Article
Preparation of fatty acid solutions exerts significant impact on experimental outcomes in cell culture models of lipotoxicity
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpab023, https://doi.org/10.1093/biomethods/bpab023
Desktop scanning electron microscopy in plant–insect interactions research: a fast and effective way to capture electron micrographs with minimal sample preparation
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpab020, https://doi.org/10.1093/biomethods/bpab020
In vitro fluorescence assay to measure GDP/GTP exchange of guanine nucleotide exchange factors of Rho family GTPases
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpab024, https://doi.org/10.1093/biomethods/bpab024
Improving one-step scarless genome editing in Drosophila melanogaster by combining ovoD co-CRISPR selection with sgRNA target site masking
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac003, https://doi.org/10.1093/biomethods/bpac003
Surgical method to prevent early death of neonatal rat pups with Hirschsprung disease, thus permitting development of long-term therapeutic approaches
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac004, https://doi.org/10.1093/biomethods/bpac004
Dissolution improvement of binary solid dispersions of erlotinib prepared by one-step electrospray method
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac001, https://doi.org/10.1093/biomethods/bpac001
Structure-based discovery of selective CYP17A1 inhibitors for Castration-resistant prostate cancer treatment
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpab026, https://doi.org/10.1093/biomethods/bpab026
Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac007, https://doi.org/10.1093/biomethods/bpac007
Semi-automatic detection of honeybee brood hygiene—an example of artificial learning to facilitate ethological studies on social insects
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac005, https://doi.org/10.1093/biomethods/bpac005
PSSMCOOL: a comprehensive R package for generating evolutionary-based descriptors of protein sequences from PSSM profiles
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac008, https://doi.org/10.1093/biomethods/bpac008
Cationic copolymers that enhance wild-type-specific suppression in BNA-clamp PCR and preferentially increase the Tm of fully matched complementary DNA and BNA strands
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac009, https://doi.org/10.1093/biomethods/bpac009
Establishing an effective gene knockdown system using cultured cells of the model fish medaka (Oryzias latipes)
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac011, https://doi.org/10.1093/biomethods/bpac011
Prediction of risk-associated genes and high-risk liver cancer patients from their mutation profile: benchmarking of mutation calling techniques
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac012, https://doi.org/10.1093/biomethods/bpac012
MLBioIGE: integration and interplay of machine learning and bioinformatics approach to identify the genetic effect of SARS-COV-2 on idiopathic pulmonary fibrosis patients
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac013, https://doi.org/10.1093/biomethods/bpac013
An efficient procedure for the recovery of DNA from formalin-fixed paraffin-embedded tissue sections
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac014, https://doi.org/10.1093/biomethods/bpac014
Combining CRISPR–Cas12a with terminal deoxynucleotidyl transferase dependent reporter elongation for pathogen detection using lateral flow test strips
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac015, https://doi.org/10.1093/biomethods/bpac015
Comparative genomics and evolutionary analysis of plant CNGCs
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac018, https://doi.org/10.1093/biomethods/bpac018
STArS (STrain-Amplicon-Seq), a targeted nanopore sequencing workflow for SARS-CoV-2 diagnostics and genotyping
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac020, https://doi.org/10.1093/biomethods/bpac020
Sera of patients infected by earlier lineages of SARS-CoV-2 are capable to neutralize later emerged variants of concern
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac021, https://doi.org/10.1093/biomethods/bpac021
SPARSEMODr: Rapidly simulate spatially explicit and stochastic models of COVID-19 and other infectious diseases
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac022, https://doi.org/10.1093/biomethods/bpac022
A novel method for handling pre-existing conditions in multivariate prediction model development for COVID-19 death in the Department of Veterans Affairs
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac017, https://doi.org/10.1093/biomethods/bpac017
Novel deterministic epidemic model considering mass vaccination and lockdown against coronavirus disease 2019 spread in Israel: a numerical study
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac023, https://doi.org/10.1093/biomethods/bpac023
A syngeneic MC38 orthotopic mouse model of colorectal cancer metastasis
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac024, https://doi.org/10.1093/biomethods/bpac024
An ensemble prediction model for COVID-19 mortality risk
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac029, https://doi.org/10.1093/biomethods/bpac029
BacARscan: an in silico resource to discern diversity in antibiotic resistance genes
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac031, https://doi.org/10.1093/biomethods/bpac031
Molecular markers for early stratification of disease severity and progression in COVID-19
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac028, https://doi.org/10.1093/biomethods/bpac028
The effects of 105 biological, socioeconomic, behavioral, and environmental factors on the risk of SARS-CoV-2 infection and a severe course of COVID-19: a prospective, explorative cohort study
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac030, https://doi.org/10.1093/biomethods/bpac030
Pre-Registered Study Protocols
Effectiveness of a community-based intervention (Konga model) to address the factors contributing to viral load suppression among children living with HIV in Tanzania: a cluster-randomized clinical trial protocol
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac002, https://doi.org/10.1093/biomethods/bpac002
Risk factors and early cardiovascular outcomes in cancer patients treated with anthracycline-based chemotherapy in Tanzania: a protocol for a quasi-experimental study
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac006, https://doi.org/10.1093/biomethods/bpac006
The COVID-19 Community Research Partnership: a multistate surveillance platform for characterizing the epidemiology of the SARS-CoV-2 pandemic
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac033, https://doi.org/10.1093/biomethods/bpac033
Protocols
HAT-field: a cheap, robust and quantitative Point-of-care serological test for Covid-19
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac026, https://doi.org/10.1093/biomethods/bpac026
Review
Oligoribonucleotide interference-PCR: principles and applications
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac010, https://doi.org/10.1093/biomethods/bpac010
All-cause and in-hospital mortality after aspirin use in patients hospitalized with COVID-19: a systematic review and meta-analysis
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac027, https://doi.org/10.1093/biomethods/bpac027
New Materials
An enChIP system for the analysis of genome functions in budding yeast
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac025, https://doi.org/10.1093/biomethods/bpac025
Teaching New Methods
Teaching computational genomics and bioinformatics on a high performance computing cluster—a primer
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac032, https://doi.org/10.1093/biomethods/bpac032
Correction
Editor’s Note: Bright fluorescent nucleic acid detection with CRISPR-Cas12a and poly(thymine) templated copper nanoparticles
Biology Methods and Protocols, Volume 7, Issue 1, 2022, bpac016, https://doi.org/10.1093/biomethods/bpac016
