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Sarah E Sansom, Gabrielle M Gussin, Michael Schoeny, Raveena D Singh, Hira Adil, Pamela Bell, Ellen C Benson, Cassiana E Bittencourt, Stephanie Black, Maria Del Mar Villanueva Guzman, Mary Carl Froilan, Christine Fukuda, Karina Barsegyan, Ellen Gough, Meghan Lyman, Jinal Makhija, Stefania Marron, Lydia Mikhail, Judith Noble-Wang, Massimo Pacilli, Robert Pedroza, Raheeb Saavedra, D Joseph Sexton, Julie Shimabukuro, Lahari Thotapalli, Matthew Zahn, Susan S Huang, Mary K Hayden, Rapid Environmental Contamination With Candida auris and Multidrug-Resistant Bacterial Pathogens Near Colonized Patients, Clinical Infectious Diseases, Volume 78, Issue 5, 15 May 2024, Pages 1276–1284, https://doi.org/10.1093/cid/ciad752
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Abstract
Environmental contamination is suspected to play an important role in Candida auris transmission. Understanding speed and risks of contamination after room disinfection could inform environmental cleaning recommendations.
We conducted a prospective multicenter study of environmental contamination associated with C. auris colonization at 6 ventilator-capable skilled nursing facilities and 1 acute care hospital in Illinois and California. Known C. auris carriers were sampled at 5 body sites followed by sampling of nearby room surfaces before disinfection and at 0, 4, 8, and 12 hours after disinfection. Samples were cultured for C. auris and bacterial multidrug-resistant organisms (MDROs). Odds of surface contamination after disinfection were analyzed using multilevel generalized estimating equations.
Among 41 known C. auris carriers, colonization was detected most frequently on palms/fingertips (76%) and nares (71%). C. auris contamination was detected on 32.2% (66/205) of room surfaces before disinfection and 20.5% (39/190) of room surfaces by 4 hours after disinfection. A higher number of C. auris–colonized body sites was associated with higher odds of environmental contamination at every time point following disinfection, adjusting for facility of residence. In the rooms of 38 (93%) C. auris carriers co-colonized with a bacterial MDRO, 2%–24% of surfaces were additionally contaminated with the same MDRO by 4 hours after disinfection.
C. auris can contaminate the healthcare environment rapidly after disinfection, highlighting the challenges associated with environmental disinfection. Future research should investigate long-acting disinfectants, antimicrobial surfaces, and more effective patient skin antisepsis to reduce the environmental reservoir of C. auris and bacterial MDROs in healthcare settings.

This graphical abstract is also available at Tidbit: https://tidbitapp.io/tidbits/dr-a2ecef5d-9e09-4873-992f-e7655597be1c
Candida auris is an emerging multidrug-resistant yeast of increasing concern [1–3]. The U.S. Centers for Disease Control and Prevention “2019 Antibiotic Resistance Threats Report” lists C. auris as an urgent threat, the first fungal pathogen to receive this designation [3]. Unlike other pathogenic yeasts, C. auris causes large, intractable outbreaks in healthcare settings [4–7]. Five percent to 10% of persons colonized with C. auris are estimated to develop invasive infections, which can be resistant to antifungal agents and are associated with high mortality [8, 9]. Healthcare-associated spread is promoted by the ability of C. auris to colonize human skin, shed into the environment, persist on inanimate surfaces for prolonged periods, and resist routine disinfectants [5, 10–13]. In the United States, long-term acute care hospitals and ventilator-capable skilled nursing facilities (SNFs) have become focal points of C. auris spread, with colonization prevalence in some facilities exceeding 70% [14–16]. C. auris continued to spread during the coronavirus disease 2019 pandemic, with notable expansion both in post-acute and acute care hospitals (ACHs) worldwide [17–22].
Understanding how C. auris colonization contributes to environmental contamination is critical to inform infection prevention, control, and outbreak response. We conducted a prospective multicenter study of SNF residents and ACH patients who were colonized with C. auris. We evaluated factors affecting the speed, magnitude, and scope of contamination of high-touch environmental surfaces in participant rooms that could contribute to spread of C. auris. Specifically, we measured time to environmental contamination to determine whether more frequent cleaning of high-touch objects should be recommended to reduce transmission risk from C. auris carriers.
METHODS
Study Design
We conducted a prospective, multicenter study of known C. auris carriers and their rooms from June 2021 through April 2022 in Chicago, IL, and Orange County, CA. C. auris carriage was defined as culture detection of C. auris from any screening or clinical specimen within the past 30 days (Figure 1). The project was conducted under local public health authority and deemed exempt from human subject research oversight under regulation 45 CFR 46.102(I)(2). Participant characteristics, medical history, and antimicrobial exposure within the prior 14 days were ascertained from medical records using a standardized data collection form.

Study sites in Chicago, IL, included one 28-bed ventilator-capable isolation unit within a 244-bed SNF and any inpatient ward within Rush University Medical Center (RUMC), a 676-bed tertiary-care ACH. Project staff members identified SNF study participants by routine periodic point-prevalence C. auris skin screening cultures collected by the local health department. Eligible ACH study participants were identified by daily review of C. auris clinical cultures and/or history of positive culture reported to the Illinois XDRO Registry (www.xdro.org) (Supplementary Table 1).
In Orange County, CA, residents of 5 ventilator-capable SNFs were evaluated for eligibility by point-prevalence C. auris skin screening performed within each facility for routine C. auris surveillance (Supplementary Table 1). Mean licensed beds per facility was 134 (range, 99–202).
Body Site Sampling
Known C. auris carriers were cultured for C. auris and bacterial multidrug-resistant organisms (MDROs) at the bilateral nares, axillae, inguinal creases, palms/fingertips, and perianal skin. Samples were collected immediately before room disinfection. Flocked swabs (FLOQSwabs, Copan, Murrieta, CA) were used to sample a 5 × 5 cm2 area from each body site, then placed in Amies transport medium with neutralizer.
Environmental Surface Disinfection
Participant rooms were cleaned daily by facility environmental services (EVS) staff according to each facility's routine procedure using facility-approved cleaning products (Supplementary Table 2). Floors were wet mopped daily in the ACH and at varying intervals in the SNFs. For the study described here, routine daily cleaning was followed immediately by targeted disinfection of high-touch surfaces by study staff using hydrogen peroxide wipes (Clorox Healthcare, EPA-approved for C. auris EPA registration #67619-25).
Environmental Surface Sampling
We conducted an initial pilot study of 10 surfaces inside and 10 surfaces outside of participant rooms to identify which environmental surfaces were most likely to be contaminated with C. auris. The results of the pilot study were used to identify the most commonly contaminated sites to include in the full study. Environmental surfaces were cultured for C. auris and bacterial MDROs using premoistened sponge-sticks (3M Sponge-Stick with neutralizing buffer; 3M, St. Paul, MN) immediately before disinfection, and at 0 (immediately following high-touch surface disinfection), 4, 8, and 12 hours after disinfection (Figure 1). Sponge-sticks were processed using the stomacher method, as described previously [23].
Sample Processing, Culture Methods and Organism Identification
Body site and environmental samples underwent semiquantitative cultivation for C. auris and other MDROs including methicillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant Enterococcus (VRE), extended-spectrum β-lactamase-producing Enterobacterales (ESBL), and carbapenem-resistant Enterobacterales (CRE) at RUMC or University of California, Irvine Hospital laboratories as described previously [12, 15, 24].
Briefly, for C. auris, aliquots (100 µL) of Amies transport medium were inoculated directly onto CHROMagar Candida plates (Becton Dickinson) and incubated at 37 °C for at least 48 hours and up to 7 days. A second 100-µL aliquot was inoculated into Salt Sabouraud Dulcitol Broth and incubated at 40 °C for 7 days; cloudy broth cultures were subsequently inoculated onto CHROMagar Candida plates [13] and incubated for up to 7 days.
For bacterial MDROs, aliquots (100 µL) were inoculated directly onto agar plates and incubated at 37 °C for 18–24 hours. Agar media used included CHROMID MRSA (bioMérieux, Marcy l’Etoile, France) or Spectra MRSA (Remel, Lenexa, KS, USA) or BBL CHROMagar MRSA (Becton Dickinson, Heidelberg, Germany) for MRSA isolation; Spectra VRE (Remel) for VRE isolation; CHROMagar Orientation with ESBL supplement (CHROMagar, Paris, France) or MacConkey agar with cefpodoxime disk (2 µg/mL) for isolation of ESBL-producing Enterobacterales; CHROMagar mSuperCARBA (CHROMagar, Paris, France) or MacConkey agar with meropenem disk (2 µg/mL) for isolation of CRE. A second 100-µl aliquot was inoculated into 5 mL of Thioglycolate Broth and incubated for 18–24 hours; cloudy broth cultures were subsequently inoculated onto the same selective agar plates and incubated for 18–24 hours. Culture workflows are illustrated in Supplementary Figure 1.
Data Analysis
Probability of surface contamination by C. auris and bacterial MDROs over the course of 12 hours after effective disinfection was analyzed. Effective disinfection was defined as no growth of C. auris from an environmental surface at the immediate postdisinfection timepoint (time 0); environmental surfaces with growth of C. auris immediately after disinfection were excluded from analysis. Odds of surface contamination after disinfection were calculated using multilevel generalized estimating equations (GEE) models in which timepoints (4, 8, and 12 hours after disinfection) were nested within environmental surfaces, and environmental surfaces were nested within participant rooms. The facility was modeled as a fixed-effect covariate. Additional covariates included body site colonization with C. auris measured as either (1) the number of colonized body sites or (2) average semiquantitative culture value using a 6-point ordinal scale, as measured by: no growth, growth in broth only, 1+, 2+, 3+, or 4+ growth on directly inoculated agar plate. Using similar models, we assessed the impact of facility type (SNF or ACH) and number of body sites colonized with bacterial MDROs on C. auris room surface contamination. For all calculations, statistical significance was defined as 2-tailed P <.05.
RESULTS
Cohort Characteristics
Forty-five known C. auris carriers were enrolled. Clinical characteristics of participants are shown in Table 1. Presence of invasive devices was high (>70% with ≥1 device), most participants were bedbound (56%), and most were housed with roommates (62%). Exposure to antibacterial agents (37%) was observed more frequently than exposure to antifungal agents (7%) in the 14 days before study enrollment.
Variable . | SNF (N = 31) . | ACH (N = 14) . | Overall (N = 45)a . | |
---|---|---|---|---|
Orange County, CA (n = 21) . | Chicago, IL (n =10) . | Chicago, IL (n = 14) . | ||
Positive body site for C. auris on day of enrollment | 21 | 8b | 12b,d | 41 |
Male, n (%) | 13 (62) | 5 (50) | 8 (57) | 26 (58) |
Age, mean y (±SD) | 65 (±14) | 58 (±11) | 61 (±15) | 62 (±14) |
Participant lucid, n (%) | 8 (38) | 3 (30) | 6 (43) | 17 (38) |
Invasive devices, n (%) | ||||
Feeding tube | 14 (67) | 9 (90) | 7 (50) | 30 (67) |
Tracheostomy | 14 (67) | 9 (90) | 5 (36) | 14 (31) |
Ventilator | 9 (43) | 5 (50) | 2 (14) | 16 (36) |
Wound(s) | 15 (71) | 7 (70) | 13 (93) | 35 (78) |
Urinary catheter | 5 (24) | 5 (50) | 3 (21) | 13 (29) |
Multiple room occupancy, n (%) | 19 (90) | 9 (90) | 0 (0) | 28 (62) |
Bedbound status, n (%) | 5 (24) | 9 (90) | 11 (79) | 25 (56) |
Incontinence, n (%) | ||||
Urinary incontinence | 18 (86) | 8 (80) | 10 (71) | 36 (80) |
Fecal incontinence | 19 (90) | 8 (80) | 11 (79) | 38 (84) |
Bath in past 24 h, n (%) | 20 (95) | 7 (70)c | 12 (86)c | 39 (87)c |
Chlorhexidine gluconate used | 20 (100) | 2 (29) | 11 (92) | 33 (85) |
Antimicrobial exposure, n (%) | ||||
Systemic antibiotic, prior 14 d | 5 (14) | 1 (10) | 10 (71) | 16 (36) |
Systemic antifungal, prior 14 d | 0 (0) | 0 (0) | 4 (29) | 4 (9) |
Variable . | SNF (N = 31) . | ACH (N = 14) . | Overall (N = 45)a . | |
---|---|---|---|---|
Orange County, CA (n = 21) . | Chicago, IL (n =10) . | Chicago, IL (n = 14) . | ||
Positive body site for C. auris on day of enrollment | 21 | 8b | 12b,d | 41 |
Male, n (%) | 13 (62) | 5 (50) | 8 (57) | 26 (58) |
Age, mean y (±SD) | 65 (±14) | 58 (±11) | 61 (±15) | 62 (±14) |
Participant lucid, n (%) | 8 (38) | 3 (30) | 6 (43) | 17 (38) |
Invasive devices, n (%) | ||||
Feeding tube | 14 (67) | 9 (90) | 7 (50) | 30 (67) |
Tracheostomy | 14 (67) | 9 (90) | 5 (36) | 14 (31) |
Ventilator | 9 (43) | 5 (50) | 2 (14) | 16 (36) |
Wound(s) | 15 (71) | 7 (70) | 13 (93) | 35 (78) |
Urinary catheter | 5 (24) | 5 (50) | 3 (21) | 13 (29) |
Multiple room occupancy, n (%) | 19 (90) | 9 (90) | 0 (0) | 28 (62) |
Bedbound status, n (%) | 5 (24) | 9 (90) | 11 (79) | 25 (56) |
Incontinence, n (%) | ||||
Urinary incontinence | 18 (86) | 8 (80) | 10 (71) | 36 (80) |
Fecal incontinence | 19 (90) | 8 (80) | 11 (79) | 38 (84) |
Bath in past 24 h, n (%) | 20 (95) | 7 (70)c | 12 (86)c | 39 (87)c |
Chlorhexidine gluconate used | 20 (100) | 2 (29) | 11 (92) | 33 (85) |
Antimicrobial exposure, n (%) | ||||
Systemic antibiotic, prior 14 d | 5 (14) | 1 (10) | 10 (71) | 16 (36) |
Systemic antifungal, prior 14 d | 0 (0) | 0 (0) | 4 (29) | 4 (9) |
Abbreviations: ACH, acute care hospital; SNF, skilled nursing facility.
aForty-five participants were enrolled, of which 41 grew C. auris on the day of sample collection.
bThere were 4 participants enrolled that did not have a positive body site culture on the day of enrollment.
cBathing information was not available for 2 participants.
dThree of 14 ACH patients had ≥1 positive clinical culture for C. auris, including urine (1), blood (1), and abscess (1).
Variable . | SNF (N = 31) . | ACH (N = 14) . | Overall (N = 45)a . | |
---|---|---|---|---|
Orange County, CA (n = 21) . | Chicago, IL (n =10) . | Chicago, IL (n = 14) . | ||
Positive body site for C. auris on day of enrollment | 21 | 8b | 12b,d | 41 |
Male, n (%) | 13 (62) | 5 (50) | 8 (57) | 26 (58) |
Age, mean y (±SD) | 65 (±14) | 58 (±11) | 61 (±15) | 62 (±14) |
Participant lucid, n (%) | 8 (38) | 3 (30) | 6 (43) | 17 (38) |
Invasive devices, n (%) | ||||
Feeding tube | 14 (67) | 9 (90) | 7 (50) | 30 (67) |
Tracheostomy | 14 (67) | 9 (90) | 5 (36) | 14 (31) |
Ventilator | 9 (43) | 5 (50) | 2 (14) | 16 (36) |
Wound(s) | 15 (71) | 7 (70) | 13 (93) | 35 (78) |
Urinary catheter | 5 (24) | 5 (50) | 3 (21) | 13 (29) |
Multiple room occupancy, n (%) | 19 (90) | 9 (90) | 0 (0) | 28 (62) |
Bedbound status, n (%) | 5 (24) | 9 (90) | 11 (79) | 25 (56) |
Incontinence, n (%) | ||||
Urinary incontinence | 18 (86) | 8 (80) | 10 (71) | 36 (80) |
Fecal incontinence | 19 (90) | 8 (80) | 11 (79) | 38 (84) |
Bath in past 24 h, n (%) | 20 (95) | 7 (70)c | 12 (86)c | 39 (87)c |
Chlorhexidine gluconate used | 20 (100) | 2 (29) | 11 (92) | 33 (85) |
Antimicrobial exposure, n (%) | ||||
Systemic antibiotic, prior 14 d | 5 (14) | 1 (10) | 10 (71) | 16 (36) |
Systemic antifungal, prior 14 d | 0 (0) | 0 (0) | 4 (29) | 4 (9) |
Variable . | SNF (N = 31) . | ACH (N = 14) . | Overall (N = 45)a . | |
---|---|---|---|---|
Orange County, CA (n = 21) . | Chicago, IL (n =10) . | Chicago, IL (n = 14) . | ||
Positive body site for C. auris on day of enrollment | 21 | 8b | 12b,d | 41 |
Male, n (%) | 13 (62) | 5 (50) | 8 (57) | 26 (58) |
Age, mean y (±SD) | 65 (±14) | 58 (±11) | 61 (±15) | 62 (±14) |
Participant lucid, n (%) | 8 (38) | 3 (30) | 6 (43) | 17 (38) |
Invasive devices, n (%) | ||||
Feeding tube | 14 (67) | 9 (90) | 7 (50) | 30 (67) |
Tracheostomy | 14 (67) | 9 (90) | 5 (36) | 14 (31) |
Ventilator | 9 (43) | 5 (50) | 2 (14) | 16 (36) |
Wound(s) | 15 (71) | 7 (70) | 13 (93) | 35 (78) |
Urinary catheter | 5 (24) | 5 (50) | 3 (21) | 13 (29) |
Multiple room occupancy, n (%) | 19 (90) | 9 (90) | 0 (0) | 28 (62) |
Bedbound status, n (%) | 5 (24) | 9 (90) | 11 (79) | 25 (56) |
Incontinence, n (%) | ||||
Urinary incontinence | 18 (86) | 8 (80) | 10 (71) | 36 (80) |
Fecal incontinence | 19 (90) | 8 (80) | 11 (79) | 38 (84) |
Bath in past 24 h, n (%) | 20 (95) | 7 (70)c | 12 (86)c | 39 (87)c |
Chlorhexidine gluconate used | 20 (100) | 2 (29) | 11 (92) | 33 (85) |
Antimicrobial exposure, n (%) | ||||
Systemic antibiotic, prior 14 d | 5 (14) | 1 (10) | 10 (71) | 16 (36) |
Systemic antifungal, prior 14 d | 0 (0) | 0 (0) | 4 (29) | 4 (9) |
Abbreviations: ACH, acute care hospital; SNF, skilled nursing facility.
aForty-five participants were enrolled, of which 41 grew C. auris on the day of sample collection.
bThere were 4 participants enrolled that did not have a positive body site culture on the day of enrollment.
cBathing information was not available for 2 participants.
dThree of 14 ACH patients had ≥1 positive clinical culture for C. auris, including urine (1), blood (1), and abscess (1).
Body Site Colonization
C. auris was cultured from ≥1 body site from 41/45 participants on the day of enrollment, and 128/205 (62%) participant body site cultures grew C. auris. Four participants did not have C. auris detected from any body site on the day of enrollment. These participants included: (1) a female participant admitted to the RUMC medical intensive care unit (ICU) with documented history in the Illinois XDRO Registry [25] of positive C. auris surveillance culture approximately 1 month before ICU admission; (2) a male participant admitted to the RUMC cardiac ICU with C. auris infective endocarditis and blood cultures growing C. auris on the day of enrollment; (3) a male participant admitted to a SNF who was enrolled approximately 6 weeks after a positive composite surveillance culture from the axillae, inguinal creases, and nares; and (4) a male participant admitted to a SNF who was enrolled approximately 4 months following a positive composite surveillance culture from the axillae and inguinal crease. This experience prompted us to perform additional point prevalence surveys that ensured a shorter time from positive surveillance culture to study enrollment.
Among the five body sites tested, C. auris was detected most commonly from the palms/fingertips (76%) and the nares (71%). C. auris was detected less often on perianal skin (54%), axillae (56%), and inguinal creases (56%) (Figure 2A). C. auris detection was higher using combinations of body sites compared with single body sites (Table 2). The proportion of C. auris carriers that would be detected with current screening recommendations was 83% (bilateral axillae and inguinal creases) [27].
![Colonization patterns of C. auris and bacterial multidrug-resistant organisms (MDROs) among known Candida auris carriers. A, Composite patterns of C. auris and bacterial MDRO body colonization among 41 C. auris carriers. Nares was not tested for VRE, ESBL, or CRE. B, Patterns of C. auris and bacterial MDRO co-colonization visualized with UpSetR [26]. The set size corresponds to the frequency of colonization for each subject. Abbreviations: CRE, carbapenem-resistant Enterobacterales; ESBL, extended-spectrum beta-lactamase-producing Enterobacterales; MRSA, methicillin-resistant Staphylococcus aureus; VRE, vancomycin-resistant Enterococcus.](https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/cid/78/5/10.1093_cid_ciad752/1/m_ciad752f2.jpeg?Expires=1747850605&Signature=yjOn1RDqOurthRL0iFD5kK7aaijV0JfEYkbmJok0LeGqL7o3BCg0bBvn5LiIXeZppR61rK5AMUBrz6QtpLP1-YeXEJmfvgzFJieaJMn6Nh4B~xwt0nNiMV5caxr2GZwWrFO2e5-M49sbMoVjxptc0jKnZ96rtIYZ2ZpAAf1jGh1BKZepbvSFbP8Dzh8uV1zXP8bMmCOeEzKxrfDZXuk03iN3vMUH4pGni4X8BQsUj9qc80JSUpSrfPyGdrI75FPCPysSpZtYmZ7OUjZejeRuaMhAX3J4nxCD5fYTQLCHw7HEdBJUXlkjo4ThJmhbLbL4xAyapEKSUn5QZ1bT8hswAw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA)
Colonization patterns of C. auris and bacterial multidrug-resistant organisms (MDROs) among known Candida auris carriers. A, Composite patterns of C. auris and bacterial MDRO body colonization among 41 C. auris carriers. Nares was not tested for VRE, ESBL, or CRE. B, Patterns of C. auris and bacterial MDRO co-colonization visualized with UpSetR [26]. The set size corresponds to the frequency of colonization for each subject. Abbreviations: CRE, carbapenem-resistant Enterobacterales; ESBL, extended-spectrum beta-lactamase-producing Enterobacterales; MRSA, methicillin-resistant Staphylococcus aureus; VRE, vancomycin-resistant Enterococcus.
Body Site Combinations . | Axilla . | Inguinal Crease . | Nares . | Palms and Fingertips . | Perianal Skin . | C. auris Detected (n = 41) (% ± 95% CI)d . |
---|---|---|---|---|---|---|
One body site | ✓ | … | … | … | … | 23 (56 ± 15%) |
… | ✓ | … | … | … | 23 (56 ± 15%) | |
… | … | ✓ | … | … | 29 (71 ± 14%) | |
… | … | … | ✓ | … | 31 (76 ± 13%) | |
… | … | … | … | ✓ | 22 (54 ± 15%) | |
Two body sitesb | ✓ | ✓ | … | … | … | 34 (83 ± 12%) |
✓ | … | ✓ | … | … | 35 (85 ± 11%) | |
✓ | … | … | ✓ | … | 33 (80 ± 12%) | |
✓ | … | … | … | ✓ | 33 (80 ± 12%) | |
… | ✓ | ✓ | … | … | 34 (83 ± 12%) | |
… | ✓ | … | ✓ | … | 35 (85 ± 11%) | |
… | ✓ | … | … | ✓ | 28 (68 ± 14%) | |
… | … | ✓ | ✓ | … | 36 (88 ± 10%) | |
… | … | ✓ | … | ✓ | 33 (80 ± 12%) | |
… | … | … | ✓ | ✓ | 36 (88 ± 10%) | |
Three body sitesc | ✓ | ✓ | ✓ | … | … | 39 (95 ± 7%) |
✓ | ✓ | … | ✓ | … | 37 (90 ± 9%) | |
✓ | ✓ | … | … | ✓ | 35 (85 ± 11%) | |
✓ | … | ✓ | ✓ | … | 37 (90 ± 9%) | |
✓ | … | ✓ | … | ✓ | 38 (93 ± 8%) | |
✓ | … | … | ✓ | ✓ | 38 (93 ± 8%) | |
… | … | ✓ | ✓ | ✓ | 39 (95 ± 7%) | |
… | ✓ | … | ✓ | ✓ | 39 (95 ± 7%) | |
Four body sitesd | ✓ | ✓ | ✓ | ✓ | … | 41 (100%) |
✓ | ✓ | ✓ | … | ✓ | 39 (95 ± 7%) | |
✓ | ✓ | … | ✓ | ✓ | 38 (93 ± 8%) | |
✓ | … | ✓ | ✓ | ✓ | 41 (100%) | |
Five body sites | ✓ | ✓ | ✓ | ✓ | ✓ | 41 (100%) |
Body Site Combinations . | Axilla . | Inguinal Crease . | Nares . | Palms and Fingertips . | Perianal Skin . | C. auris Detected (n = 41) (% ± 95% CI)d . |
---|---|---|---|---|---|---|
One body site | ✓ | … | … | … | … | 23 (56 ± 15%) |
… | ✓ | … | … | … | 23 (56 ± 15%) | |
… | … | ✓ | … | … | 29 (71 ± 14%) | |
… | … | … | ✓ | … | 31 (76 ± 13%) | |
… | … | … | … | ✓ | 22 (54 ± 15%) | |
Two body sitesb | ✓ | ✓ | … | … | … | 34 (83 ± 12%) |
✓ | … | ✓ | … | … | 35 (85 ± 11%) | |
✓ | … | … | ✓ | … | 33 (80 ± 12%) | |
✓ | … | … | … | ✓ | 33 (80 ± 12%) | |
… | ✓ | ✓ | … | … | 34 (83 ± 12%) | |
… | ✓ | … | ✓ | … | 35 (85 ± 11%) | |
… | ✓ | … | … | ✓ | 28 (68 ± 14%) | |
… | … | ✓ | ✓ | … | 36 (88 ± 10%) | |
… | … | ✓ | … | ✓ | 33 (80 ± 12%) | |
… | … | … | ✓ | ✓ | 36 (88 ± 10%) | |
Three body sitesc | ✓ | ✓ | ✓ | … | … | 39 (95 ± 7%) |
✓ | ✓ | … | ✓ | … | 37 (90 ± 9%) | |
✓ | ✓ | … | … | ✓ | 35 (85 ± 11%) | |
✓ | … | ✓ | ✓ | … | 37 (90 ± 9%) | |
✓ | … | ✓ | … | ✓ | 38 (93 ± 8%) | |
✓ | … | … | ✓ | ✓ | 38 (93 ± 8%) | |
… | … | ✓ | ✓ | ✓ | 39 (95 ± 7%) | |
… | ✓ | … | ✓ | ✓ | 39 (95 ± 7%) | |
Four body sitesd | ✓ | ✓ | ✓ | ✓ | … | 41 (100%) |
✓ | ✓ | ✓ | … | ✓ | 39 (95 ± 7%) | |
✓ | ✓ | … | ✓ | ✓ | 38 (93 ± 8%) | |
✓ | … | ✓ | ✓ | ✓ | 41 (100%) | |
Five body sites | ✓ | ✓ | ✓ | ✓ | ✓ | 41 (100%) |
aInitial body site screening approaches used to establish carrier status are outlined in Supplementary Table 1.
bA composite swab of bilateral axillae and inguinal regions is currently recommended by the Centers for Disease Control and Prevention for C. auris screening [27].
cValue of adding nares, palms/fingertips, and perianal skin together with bilateral axillae and inguinal crease swab cultures is shown. Additional combinations with >90% colonization detection shown.
dValue of adding 2 additional body sites together with bilateral axillae and inguinal crease swab cultures is shown. Additional combinations with 100% colonization detection are also shown.
Body Site Combinations . | Axilla . | Inguinal Crease . | Nares . | Palms and Fingertips . | Perianal Skin . | C. auris Detected (n = 41) (% ± 95% CI)d . |
---|---|---|---|---|---|---|
One body site | ✓ | … | … | … | … | 23 (56 ± 15%) |
… | ✓ | … | … | … | 23 (56 ± 15%) | |
… | … | ✓ | … | … | 29 (71 ± 14%) | |
… | … | … | ✓ | … | 31 (76 ± 13%) | |
… | … | … | … | ✓ | 22 (54 ± 15%) | |
Two body sitesb | ✓ | ✓ | … | … | … | 34 (83 ± 12%) |
✓ | … | ✓ | … | … | 35 (85 ± 11%) | |
✓ | … | … | ✓ | … | 33 (80 ± 12%) | |
✓ | … | … | … | ✓ | 33 (80 ± 12%) | |
… | ✓ | ✓ | … | … | 34 (83 ± 12%) | |
… | ✓ | … | ✓ | … | 35 (85 ± 11%) | |
… | ✓ | … | … | ✓ | 28 (68 ± 14%) | |
… | … | ✓ | ✓ | … | 36 (88 ± 10%) | |
… | … | ✓ | … | ✓ | 33 (80 ± 12%) | |
… | … | … | ✓ | ✓ | 36 (88 ± 10%) | |
Three body sitesc | ✓ | ✓ | ✓ | … | … | 39 (95 ± 7%) |
✓ | ✓ | … | ✓ | … | 37 (90 ± 9%) | |
✓ | ✓ | … | … | ✓ | 35 (85 ± 11%) | |
✓ | … | ✓ | ✓ | … | 37 (90 ± 9%) | |
✓ | … | ✓ | … | ✓ | 38 (93 ± 8%) | |
✓ | … | … | ✓ | ✓ | 38 (93 ± 8%) | |
… | … | ✓ | ✓ | ✓ | 39 (95 ± 7%) | |
… | ✓ | … | ✓ | ✓ | 39 (95 ± 7%) | |
Four body sitesd | ✓ | ✓ | ✓ | ✓ | … | 41 (100%) |
✓ | ✓ | ✓ | … | ✓ | 39 (95 ± 7%) | |
✓ | ✓ | … | ✓ | ✓ | 38 (93 ± 8%) | |
✓ | … | ✓ | ✓ | ✓ | 41 (100%) | |
Five body sites | ✓ | ✓ | ✓ | ✓ | ✓ | 41 (100%) |
Body Site Combinations . | Axilla . | Inguinal Crease . | Nares . | Palms and Fingertips . | Perianal Skin . | C. auris Detected (n = 41) (% ± 95% CI)d . |
---|---|---|---|---|---|---|
One body site | ✓ | … | … | … | … | 23 (56 ± 15%) |
… | ✓ | … | … | … | 23 (56 ± 15%) | |
… | … | ✓ | … | … | 29 (71 ± 14%) | |
… | … | … | ✓ | … | 31 (76 ± 13%) | |
… | … | … | … | ✓ | 22 (54 ± 15%) | |
Two body sitesb | ✓ | ✓ | … | … | … | 34 (83 ± 12%) |
✓ | … | ✓ | … | … | 35 (85 ± 11%) | |
✓ | … | … | ✓ | … | 33 (80 ± 12%) | |
✓ | … | … | … | ✓ | 33 (80 ± 12%) | |
… | ✓ | ✓ | … | … | 34 (83 ± 12%) | |
… | ✓ | … | ✓ | … | 35 (85 ± 11%) | |
… | ✓ | … | … | ✓ | 28 (68 ± 14%) | |
… | … | ✓ | ✓ | … | 36 (88 ± 10%) | |
… | … | ✓ | … | ✓ | 33 (80 ± 12%) | |
… | … | … | ✓ | ✓ | 36 (88 ± 10%) | |
Three body sitesc | ✓ | ✓ | ✓ | … | … | 39 (95 ± 7%) |
✓ | ✓ | … | ✓ | … | 37 (90 ± 9%) | |
✓ | ✓ | … | … | ✓ | 35 (85 ± 11%) | |
✓ | … | ✓ | ✓ | … | 37 (90 ± 9%) | |
✓ | … | ✓ | … | ✓ | 38 (93 ± 8%) | |
✓ | … | … | ✓ | ✓ | 38 (93 ± 8%) | |
… | … | ✓ | ✓ | ✓ | 39 (95 ± 7%) | |
… | ✓ | … | ✓ | ✓ | 39 (95 ± 7%) | |
Four body sitesd | ✓ | ✓ | ✓ | ✓ | … | 41 (100%) |
✓ | ✓ | ✓ | … | ✓ | 39 (95 ± 7%) | |
✓ | ✓ | … | ✓ | ✓ | 38 (93 ± 8%) | |
✓ | … | ✓ | ✓ | ✓ | 41 (100%) | |
Five body sites | ✓ | ✓ | ✓ | ✓ | ✓ | 41 (100%) |
aInitial body site screening approaches used to establish carrier status are outlined in Supplementary Table 1.
bA composite swab of bilateral axillae and inguinal regions is currently recommended by the Centers for Disease Control and Prevention for C. auris screening [27].
cValue of adding nares, palms/fingertips, and perianal skin together with bilateral axillae and inguinal crease swab cultures is shown. Additional combinations with >90% colonization detection shown.
dValue of adding 2 additional body sites together with bilateral axillae and inguinal crease swab cultures is shown. Additional combinations with 100% colonization detection are also shown.
Pilot Evaluation
Of 10 environmental surfaces tested after disinfection within 12 participant rooms, C. auris was detected most frequently on surfaces close to the participant, including the bed handrail (42%), overbed table (42%), television remote/call button (25%), footboard (25%), and nightstand (17%). These 5 environmental surfaces were retained for sampling in the full study. Environmental surfaces outside of participants’ rooms were rarely contaminated with C. auris and were not cultured in the full study (Supplementary Table 3).
Environmental Contamination After Disinfection
Next, we assessed time to environmental surface contamination, comparing immediate postdisinfection cultures (0 hours) to those collected at 4, 8, and 12 hours after room disinfection. Environmental surface contamination before disinfection was high in both SNF and ACH facilities (SNF 43/145 surfaces [30%] versus ACH 23/60 surfaces [38%]; P = .659). Room surfaces with growth of C. auris in culture immediately after disinfection (SNF 7/145 [4.8%] and ACH 6/60 [10%]) were excluded from time to contamination analyses. Time to contamination was rapid, with 39/190 (20.5%) room surfaces contaminated by 4 hours after disinfection. The proportion of contamination remained stable between 4 and 12 hours after disinfection. At all timepoints, the microbial load on surfaces remained below predisinfection levels (Figure 3). The percentage of surfaces contaminated after disinfection was higher in the ACH compared with SNFs (SNF 12% vs ACH 34% by 12 hours; P < .001) (Supplementary Figure 2).

Time to environmental surface contamination with Candida auris and bacterial multidrug-resistant organisms (MDRO). Patterns of C. auris and MDRO environmental contamination by time point in relation to room disinfection are shown as composite of contaminated environmental surfaces at each time point. For each bacterial organism, surface contamination is evaluated among persons who were co-colonized with C. auris and that organism. There were 28 ESBL (68%), 25 VRE (61%), 21 MRSA (51%), and 17 CRE (41%) co-colonized participants identified. Abbreviations: CRE, carbapenem-resistant Enterobacterales; ESBL, extended-spectrum beta-lactamase-producing Enterobacterales; MRSA, methicillin-resistant Staphylococcus aureus; VRE, vancomycin-resistant Enterococcus.
Risk Factors for Environmental Contamination
In our GEE models, having a higher number of C. auris–colonized body sites was associated with higher odds of environmental contamination at every time point following surface disinfection, adjusting for facility of residence and time. Quantifying C. auris bioburden at each body site using a 6-point ordinal scale did not improve prediction of environmental contamination; thus, body site positivity was expressed as a binary variable (positive or negative culture result). GEE model results were stratified by facility type (ACH or SNF) because of a significant interaction between facility type and number of colonized body sites in predicting surface contamination (P = .03). The odds of environmental contamination increased 1.40 to 2.16 times for each additional body site that was culture-positive (ACH: odds ratio, 2.16 [95% confidence interval, 1.63–2.88], P < .001; SNF: odds ratio, 1.40 [95% confidence interval, 1.07–1.84], P = .015).
Although there was no difference in mean bioburden of C. auris between participants in the 2 facility types as measured by proportion of body sites positive or density of colonization at body sites, ACH participants had higher rates of bedbound status (83% vs 45%, χ2 P = .024), intravascular catheter use (75% vs 24%, P = .002), systemic antibiotic exposure (75% vs 21%, P = .001), and systemic antifungal exposure (25% vs 0%, P = .005) compared with SNF residents.
Bacterial MDRO Co-colonization and Environmental Contamination
Among C. auris carriers, body co-colonization with bacterial MDROs (ie, MRSA, VRE, ESBL, CRE) was common, with at least 1 bacterial MDRO detected in 93% (38/41) of C. auris– colonized participants (Figure 2A and 2B). There were 28 ESBL (68%), 25 VRE (61%), 21 MRSA (51%), and 17 CRE (41%) co-colonized participants identified. Among participants with confirmed body co-colonization with each respective MDRO, environmental contamination with MRSA or VRE after disinfection was common across all tested surfaces (Figure 3); contamination with the Gram-negative MDROs was less common. We did not observe an association between bacterial MDRO co-colonization and odds of C. auris room contamination.
DISCUSSION
Environmental contamination is suspected to play an important role in C. auris transmission in healthcare facilities. Although contamination of the healthcare environment has been well described for bacterial pathogens [23, 28, 29], information for C. auris is limited. Here, we report that contamination resulting from C. auris occurs rapidly after disinfection of the immediate environment near known C. auris carriers. Most environmental contamination occurred within 4 hours of disinfection, suggesting that twice-daily or even 3 times-daily cleaning would not suffice to mitigate contamination that could lead to C. auris spread. Our prior work in SNFs demonstrated that cleaning fidelity was often poor, with <25% of high-touch surfaces adequately cleaned each day [30]. Practical limits to cleaning frequency could potentially be overcome with the use of long-acting disinfectants or antimicrobial surfaces. In the meantime, traditional infection prevention strategies, including assiduous hand hygiene and barrier precautions (eg, gowns, gloves), should be used for C. auris containment.
The positive correlation between C. auris environmental contamination and the number of colonized body sites provides another potential target for prevention. Notably, nearly all C. auris carriers were co-colonized with high-priority bacterial MDROs that also shed heavily into the nearby environment. In terms of the speed and magnitude of environmental contamination, C. auris behaved most similarly to MRSA. C. auris and MRSA share a propensity to colonize the skin and nares and to persist in the healthcare environment for prolonged periods [1, 31]. Given these similarities, efforts to reduce shedding and spread by suppressing body-surface bioburden may be warranted. Although routine chlorhexidine bathing has been an effective component of MRSA prevention bundles [32], the effect of chlorhexidine skin antisepsis in controlling C. auris has not been proven [8, 14, 15]. However, we have previously demonstrated that chlorhexidine concentrations sufficient to reduce C. auris skin colonization [15] can be achieved with adequate attention to bathing technique [33]. Taken together, these findings highlight the need for novel solutions such as more broadly effective antiseptic bathing products to reduce both body-surface colonization and subsequent environmental contamination by multiple pathogens.
We found that C. auris carriers often had C. auris present on the hands and nares. These body sites are easily accessible and may be additive to or potentially replace currently recommended screening sites that target the axillae and inguinal creases. Addition of the nares yielded 12% additional capture and addition of palms/fingertips yielded 7% additional capture beyond an axillae/inguinal sample [27]. This supports prior work by our group [15] and others demonstrating the value of screening multiple body sites to detect C. auris colonization [5, 9, 16, 34, 35]. Beyond informing screening recommendations, high rates of colonization of the hands and nares reveal 2 additional targets for potential intervention; future work should evaluate the impact of enhanced hand hygiene and nasal decolonization for C. auris carriers. Because antiseptic bathing does not impact nasal carriage, we anticipate that nasal decolonization may be an important component for reducing C. auris carriage and preventing infection.
The finding of greater environmental surface contamination in acute care versus SNFs was unexpected. Confidence in the generalizability of this finding is limited because of the enrollment of only 1 ACH. In exploratory analyses, we observed that acute care participants were more likely to have higher medical complexity and to have recent exposure to systemic antimicrobial agents than were SNF participants. We hypothesize that the higher medical acuity and antibiotic exposure in the acute care participants may be associated with greater environmental surface contamination, possibly because of increased patient contact with medical staff (eg, higher care needs), with staff potentially acting as an intermediary for contamination of the patient environment. Exposure to antibiotics may also decrease the abundance of indigenous commensal bacterial species on patients’ skin and provide a favorable environment for increase in the abundance of C. auris.
This study has both strengths and limitations. Despite a small sample size of 41 patients, our conclusions regarding the speed and burden of environmental contamination are strengthened by frequent sampling of multiple environmental surfaces. Moreover, the 7 participating facilities span distinct geographic regions with historically different C. auris clade types (California: clade III; Illinois: clade IV [7, 36, 37]), expanding the generalizability of our findings. Furthermore, in contrast to prior studies, we evaluated C. auris colonization and environmental contamination under nonoutbreak conditions and in the context of bacterial MDRO co-colonization; our findings highlight the need for broad strategies that simultaneously address multiple pathogens. We did not monitor the activity within patient rooms or interactions with healthcare workers during each 12-hour study period; further work is needed to examine the impact of specific high-contact activities on C. auris environmental contamination. We also note that the effect of repeated surface sampling on the recovery of C. auris is not known and may have altered culture detection at later time points. However, this limitation does not obscure the primary findings that most contamination occurs within 4 hours after disinfection.
C. auris rapidly contaminates the healthcare environment, often together with multidrug-resistant bacterial pathogens, near colonized patients. The current findings extend our understanding of the impact of C. auris body colonization on environmental contamination [6, 12, 14, 15], which may serve as an intermediary for transmission. Importantly, our findings highlight the critical need to develop and implement broadly effective interventions that will impact multiple pathogens simultaneously. The speed of environmental contamination after surface disinfection highlights the challenges associated with managing environmental C. auris contamination. Use of long-acting disinfectants and/or antimicrobial surfaces, if available, may offer more durable and pragmatic solutions compared with high-frequency room cleaning. Additionally, strategies that have successfully reduced body-surface bioburden of bacterial MDROs deserve further investigation for their potential to reduce C. auris. In the meantime, traditional infection control and prevention measures, including environmental cleaning and disinfection in concert with hand hygiene and barrier precautions, should continue to be prioritized to mitigate spread of C. auris and other MDRO threats.
Supplementary Data
Supplementary materials are available at Clinical Infectious Diseases online. Consisting of data provided by the authors to benefit the reader, the posted materials are not copyedited and are the sole responsibility of the authors, so questions or comments should be addressed to the corresponding author.
Notes
Acknowledgments. The authors thank the participating facilities and patients for making this work possible.
Financial support. This work was supported by the Centers for Disease Control and Prevention Foundation (Project Number 1085.1-CDC Proj 047 to M. K. H. and S. S. H.) and the Centers for Disease Control and Prevention Epicenters Program (U54CK000607 to M. K. H.).
Disclaimer. The findings and conclusions of this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.
References
Centers for Disease Control and Prevention. Screening for Candida auris colonization. Available at: https://www.cdc.gov/fungal/candida-auris/c-auris-screening.html. Accessed 24 August 2022.
Author notes
Sarah E. Sansom and Gabrielle M. Gussin contributed equally to this work.
Susan S. Huang and Mary K. Hayden contributed equally to this work.
Potential conflicts of interest. G. M. G., R. D. S., R. S., R. P., S. S. H., and M. K. H. have the following disclosures: Conducted studies where participating healthcare facilities received contributed antiseptic and cleaning products from Medline Industries, Inc., and Xttrium Laboratories. Companies had no role in the design, conduct, or analysis of these studies. The remaining authors have no conflicts to declare. K. B. reports other financial or nonfinancial interests: Conducted studies where participating hospitals/nursing homes received cleaning and antiseptic product from Medline Industries (payment to institution). G. M. G. also reports the following grants or contracts to institution: NIAID 5F31AI172386-02: Endemic and Emerging Multidrug Resistant Organisms in Nursing Homes: A Neglected Clinical Setting and 1P01AI172725: MDRO Carriage, Transmission, Sequelae, and Prevention in Nursing Homes. M. K. H. reports a position as unpaid volunteer position as President SHEA Board of Trustees and the following grants or contracts to institution: CDC BAA 75D301-19-67835 Evaluating emergence of resistance and changes in clinical pathogens following introduction of chlorhexidine bathing. S. S. H., R. S., J. S., and R. D. S. report grants or contracts to institution: 1P01AI172725: MDRO Carriage, Transmission, Sequelae, and Prevention in Nursing Homes. S. E. S. reports the following grants or contracts to institution: NIH—1R01AI175227-01 (Subaward from University of Michigan) and Cohn Fellowship Intramural Career Development Grant (Rush University Medical Center); travel stipend to cover travel costs to present at IDWeek 2022 from Society for Healthcare Epidemiology of America. All other authors report no potential conflicts.
All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.