Abstract

Worldwide declines in riverine fish abundance and diversity have been linked to the fragmentation of aquatic habitats through the installation of instream structures (e.g. culverts, dams, weirs and barrages). Restoring riverine connectivity can be achieved by remediating structures impeding fish movements by, for example, replacing smooth substrates of pipe culverts with naturalistic substrates (i.e. river stones; culvert roughening). However, empirical evaluations of the efficacy of such remediation efforts are often lacking despite the high economic cost. We assessed the effectiveness of substrate roughening in improving fish swimming performance and linked this to estimates of upstream passage success. Critical swimming speeds (Ucrit) of two small-bodied fish, purple-spotted gudgeon (Mogurnda adspersa; 7.7–11.6 cm total length, BL) and crimson-spotted rainbowfish (Melanotaenia duboulayi; 4.2–8.7 cm BL) were examined. Swimming trials were conducted in a hydraulic flume fitted with either a smooth acrylic substrate (control) or a rough substrate with fixed river stones. Swimming performance was improved on the rough compared to the smooth substrate, with Mo. adspersa (Ucrit-smooth = 0.28 ± 0.0 m s−1, 2.89 ± 0.1 BL s−1, Ucrit-rough = 0.36 ± 0.02 m s−1, 3.66 ± 0.22 BL s−1, mean ± s.e) and Me. duboulayi (Ucrit-smooth = 0.46 ± 0.01 m s−1, 7.79 ± 0.33 BL s−1; Ucrit-rough = = 0.55 ± 0.03 m s−1, 9.83 ± 0.67 BL s−1, mean ± s.e.) both experiencing a 26% increase in relative Ucrit. Traversable water velocity models predicted maximum water speeds allowing successful upstream passage of both species to substantially increase following roughening remediation. Together these findings suggest culvert roughening may be a solution which allows hydraulic efficiency goals to be met, without compromising fish passage.

Introduction

Disruption of riverine connectivity is one of the leading threats to the persistence of riverine fishes (Paul and Meyer, 2001; Nilsson et al., 2005; Liermann et al., 2012). Instream structures (e.g. dams, weirs, barrages and culverts) can impede up- and down-stream fish movements by creating physical (e.g. dam walls), hydraulic (e.g. excessive water velocities), physiochemical (e.g. low dissolved oxygen) and behavioural (e.g. low light-levels) barriers. Free and efficient movement throughout waterways is essential to the survival and reproductive success of many fishes (Fausch et al., 2002). Small-scale, intra-biome movements can be necessary for defending territory, avoiding predators and accessing food (Clapp et al., 1990; Harvey, 1991); whereas large-scale, inter-biome movements are often necessary for reaching spawning grounds, habitat selection and maintenance of genetic diversity (Gowan and Fausch, 2002; Yamamoto et al., 2004). Artificial structures can disrupt these processes and have been linked to local extinction events globally (Gehrke et al., 2002; Quinn and Kwak, 2003; Lundqvist et al., 2008).

Fish passes have been developed to facilitate fish movements around instream barriers, but a comprehensive set of conditions conducive to optimizing passage (e.g. water velocity, turbulence and temperature, and structure slope, height and length) is unavailable for many species. Research in this area has predominantly focused on enabling fish to bypass large obstructions such as dams and weirs (Starrs et al., 2011; Bunt et al., 2012; Li et al., 2015). Designing passes at small but numerous barriers, such as culverts, is however receiving increasing attention (Mueller et al. 2008; Feurich et al. 2012; Rodgers et al., 2014).

The combined effect of culverts and other small barriers (e.g. low head dams and water diversions) on fish movement is estimated to be greater than that of large dams due to their high numbers (Januchowski-Hartley et al., 2013). Culverts allow for continued water connectivity below road-crossings but generally at greater velocities than the natural waterway because of a reduced cross-sectional area, creating hydraulic barriers (Ead et al., 2002; Norman et al., 2009). Culverts account for the majority of hydraulic barriers in developed waterways (Williams and Watford, 1997; Bouska and Paukert, 2010) and were originally designed to maximize water transport with little consideration of fish access (Warren and Pardew, 1998).

Design criteria of culverts have been revised in recent years to improve fish passage (Barnard et al., 2015; Van der Ree et al., 2015; Duguay and Lacey, 2016) but many existing structures require remediation (Andersen et al., 2012). While there are numerous remediation approaches, the effectiveness of culvert roughening (i.e. replacing smooth concrete substrates with rough, naturalistic substrates such as river stones and plants) has received little investigation (Newbold and Kemp, 2015; Goerig et al., 2016). Culvert roughening is predicted to improve fish passage by two mechanisms: via lowering the energetic cost of swimming and by increasing behavioural attraction to a more naturalistic structure. Roughened culverts have altered hydraulic properties so that reduced-velocity zones (RVZs) are created along the structure's base and walls (Powers et al., 1997; Richmond et al., 2007). Fish are hypothesized to utilize RVZs during passage, thereby lowering energetic costs (i.e. RVZ hypothesis; Powers et al. 1997; Richmond et al., 2007; Johnson et al. 2012). Support for the RVZ hypothesis has been documented in several species but these studies used corrugated metal substrates to increase roughness (Richmond et al., 2007; Johnson et al., 2012; Clark et al., 2014). Recent comparisons of pebbled and smooth substrates found no derived benefits to the swimming performance of juvenile shortnose sturgeon, Acipenser brevirostrum (Downie and Kieffer, 2017). This lack of energetic advantage was attributed to a small pebble size, relative to fish body size (Downie and Kieffer, 2017). The RVZ hypothesis remains untested for larger, naturalistic substrates, such as river stones. In addition to creating RVZs, roughening can also increase hydrodynamic heterogeneity (i.e. turbulence, Richmond et al., 2007). Turbulent flows are characterized by a mosaic of constantly fluctuating water speeds that fish may take advantage of, by timing swimming efforts with pockets of low-velocity or exploiting eddies to facilitate propulsion; a strategy termed kármán gaiting (Liao et al., 2003; Liao and Cotel, 2013).

Remediation approaches can be economically costly, with finite funds directed towards waterway restoration, deeming it imperative to ensure restoration efforts benefit target species. The aim of this study was twofold: (i) to determine if fish swimming performance is improved above rough compared to smooth substrates, and (ii) to model and evaluate the effectiveness of substrate roughening as a remediation strategy. Two small-bodied (<12 cm, total length, BL), freshwater species were used to address these aims: purple-spotted gudgeon, Mogurnda adspersa (Castelnau, 1878), and crimson-spotted rainbowfish, Melanotaenia duboulayi (Linnaeus, 1758). These species are sympatric and endemic to Australia, with populations spread along coastal catchments in south-east Queensland and northern New South Wales (Australian Conservation Agency, 1993). Both species are potamodromous, migrating within freshwater, and have experienced severe population declines in association with waterway development and fragmentation (Pusey et al., 1993; Boxall et al., 2002; Faulks et al., 2008; Carvalho et al., 2012). The purple-spotted gudgeon is listed as an endangered species under the ‘Fisheries Management Act, 1994’ in New South Wales, Australia, and is the focus of ongoing conservation initiatives. Small-bodied species were selected as this group is underrepresented in fish passage research, with the focus generally towards large, strong-swimming, iconic, recreational or commercial species (Pearson et al., 2006; Lacey et al., 2012). We predicted that: (H1) swimming performance would be markedly improved over rough compared to smooth substrates, and (H2) culvert remediation models would show roughening to be an effective approach, exemplified by higher maximum water velocities allowing successful upstream passage of fish.

Materials and methods

Fish maintenance

Crimson-spotted rainbowfish (Melanotaenia duboulayi) (n = 60; BL: mean ± s.d. 5.93 ± 0.9 cm; range 4.2–8.7 cm) and purple-spotted gudgeon (Mogurnda adspersa) (n = 60; BL: mean ± s.d. 9.99 ± 0.8 cm; range 7.71–11.58 cm) were obtained from a commercial hatchery (Australian Native Fish Enterprises, Burpengary, Queensland, Australia). Fish were housed in 45 L glass aquaria (L × W × H, 60 × 30 × 30 cm) at a stocking density of approximately 3 g (body mass) L−1 (Mo. adspersa) and 1 g L−1 (Me. duboulayi). Aquaria contained Brisbane city tap water conditioned with water primer (Prime®, Seachem, Georgia, USA), maintained at a constant temperature (25 ± 1°C). Water chemistry (pH, nitrogen and ammonia) was monitored weekly to ensure water quality. Fish were fed commercially supplied food pellets (Hikari® Tropical Micro Wafers and TTanked Tropical+ food pellets) daily to satiation. The photoperiod was set to a 12-h light: 12-h dark cycle.

Substrate design

Swimming trials were conducted in a 185 L flow-controlled hydraulic flume (Loligo®, Tjele, Denmark; swim chamber dimensions: L ×W × H, 87 × 25 × 25 cm). Each swimming trial incorporated one substrate treatment, either a smooth acrylic panel or a custom-made, roughened substrate with fixed river stones (Fig. 1). River stones were glued to the acrylic panel in fixed positions to ensure each fish experienced the same conditions. The shape and size of river stones varied, but average stone diameter equated to 0.25 body lengths (BLs) and 0.40 BL for purple-spotted gudgeon (Mo. adspersa) and crimson-spotted rainbowfish (Me. duboulayi), respectively. The top surface area (SA) of each stone was measured using the particle analysis function in ImageJ (Schneider et al., 2012; median SA (SA50) = 4.99 cm2; median diameter (D50) = 2.52 cm) (see Supplementary Figs S1–S2). The substrates lined the bottom of the swim chamber (87 × 25 × 1.5 cm; L × W × H) and the swim chamber walls were made of smooth acrylic in both treatments. The substrates were detachable so treatment order could be randomized.
Figure 1:

Substrates used in the swimming trials: (A) roughened substrate with fixed river stones and (B) smooth acrylic panel; River stones varied in shape and size but the majority were ~3 × 2 × 1 cm; l × w × h; River stone length equated to 0.3 BL and 0.5 BL for purple-spotted gudgeon (Mo. adspersa) and crimson-spotted rainbowfish (Me. duboulayi), respectively.

Swim chamber calibration

The swim chamber was calibrated using a Pitot tube (Dwyer series 166, diameter = 3.18 mm, Dwyer Instruments®, Unanderra, AUS) and custom-built air-water manometer set to a 30° angled incline. A 5 × 5 cross-section in the centre of the swim chamber was measured for each water velocity increment (revolutions s−1) on the smooth and roughened substrates. A time-averaged water velocity (m s−1) calibration curve was determined for each substrate. The calibration curve for the smooth and roughened substrates were described by the following equations:
Vsmooth=0.0382RPS+0.0578;r2=0.99,
(1)
Vrough=0.0392RPS+0.0096;r2=0.99,
(2)
where Vsmooth and Vrough represent the time-averaged water velocity (m s−1) for the swim chamber containing smooth and rough substrates, respectively, and RPS represents the swimming flume's propeller speed (revolutions s−1). The rough substrate consistently derived lower water velocities for a given propeller speed compared to the smooth substrate between 6–18 revolutions s−1, and water velocity converged for both substrates at 21 revolutions s−1 (Fig. 2). Heat maps displaying the distribution of water velocity for both substrates at identical time-averaged velocities show increased hydrodynamic heterogeneity and a greater number of RVZs along the base of the swim chamber in the rough compared to the smooth treatment (Fig. 3).
Figure 2:

Water velocity (m s−1; represented by colour) heat maps of the swim chamber with smooth (left hand panel) and rough (right hand panel) substrates at three separate propeller speeds: 3.3 (A, B), 11.3 (C, D) and 21.3 (E, F) RPS (revolutions s−1); A 5 × 5 cross-section in the centre of the swim chamber was calibrated along the Y- and Z-planes, using a Pitot tube and custom-built air-water manometer. Time-averaged water velocities above the rough substrate were consistently lower than the smooth substrate at the same propeller speed.

Figure 3:

Water velocity (m s−1, represented by colour) heat maps of the swim chamber with smooth (left hand panel) and rough (right hand panel) substrates at a range time-averaged velocities (i.e. 0.38 m s−1AB, 0.52 m s−1CD, 0.76 m s−1EF); A 5 × 5 cross-section in the centre of the swim chamber was calibrated along the Y- and Z-planes, using a Pitot tube and custom-built, air-water manometer; Hydrodynamic heterogeneity was increased and a greater number of RVZs were visualized along the base of the swim chamber in the rough compared to the smooth treatment.

Swimming performance

Fish were tested individually in a post-absorptive state (fasted for 24 h). Substrate treatment was randomly assigned to fish using a random number generator (random.org; even number = smooth, odd number = rough), and fish were tested once to avoid training effects (Davison, 1997) (n = 30 per treatment, per species). Body sizes of fish were similar between rough and smooth substrate treatment groups for both species (Mo. adspersa BL mean ± s.d.; smooth 10.0 ± 0.8 cm, rough 9.9 ± 0.9 cm; Me. duboulayi smooth 6.1 ± 1.0 cm, rough 5.8 ± 0.8). Fish were allowed 30 min to adjust to conditions in the swimming flume with water velocity switched off (i.e. 0.00 m s−1), after which water velocity was increased every 5 min at increments of 0.05 m s−1, starting at 0.05 m s−1, until the fish fatigued. Fatigue was defined as the fish resting on the back wall of the swim chamber for ≥ 3 s. Total swimming time until fatigue and water velocity at fatigue were recorded to calculate critical swimming speed (Ucrit), using Brett's (1964) equation, as follows:
Ucrit=Uf+[Ui(Tf/Ti)],
(3)
where Uf is the highest velocity sustained for an entire 5 min interval (m s−1), Ui is the water velocity increment (0.05 m s−1), Tf is the time (s) swum in the final increment and Ti is the time interval (300 s). Ucrit tests provided a measurement of the maximum velocity at which a fish can sustainably swim without fatiguing (Hammer, 1995; Peake, 2004) and were used to inform traversable water models. The 5 min increments in water velocity were of suitable duration, as weak swimming fishes can, in theory, travel 90 m upstream in 5 min (i.e. Ucrit = 0.3 m s−1 × 300 s = 90 m)—a distance far exceeding the length of most culverts (Williams and Watford, 1997). Critical swimming speed measurements were standardized for fish body size, in terms of total body length per second (BL s−1), and both absolute (i.e. m s−1) and relative critical swimming speeds (BL s−1) are reported. The swim chamber was constantly aerated and water temperature was maintained at 25 ± 0.5°C using a submersible heater (300W Aqua One®, Ingleburn, Australia). Swimming gait was observed and classified as either direct, body-caudal fin (BCF) (Webb, 1998) or station-holding (Webb, 1989) where pectoral fins were used to grasp/hold position on the substrate. Measures of critical swimming speed continued when fish exhibited station-holding behaviour (Deslauriers and Kieffer, 2012; Kieffe et al., 2009). Total BL measurements were included in all analyses as a covariate. Following the completion of swimming trials, fish were lightly anaesthetized using AQUI-S (20 mg mL−1), blot-dried and photographed. ImageJ (National Institutes of Health, Maryland, USA) was used to measure BL for each fish. Cross-sectional body area of all fish was less than 10% of the cross-sectional area of the swimming flume chamber; therefore, corrections for the solid-blocking effect (Bell and Terhune, 1970) were not necessary.

Culvert remediation models

To evaluate the effectiveness of culvert roughening, changes in swimming performance observed in the laboratory were assumed to translate to the field. Maximum traversable water velocities were modelled for both species swimming upstream through a range of culvert sizes (2–60 m in length), with either smooth or roughened substrates, using Peake et al.’s (1997) equation:
Vf=Vs(d×EVs1),
(4)
where Vf is the traversable water velocity (m s−1) within a culvert, Vs is the average critical swimming speed (Ucrit), d is the length of the culvert (m) and EVs is the endurance of the fish swimming at Vs (s). The endurance was 5 min, as that was the period of time in which the fish swam for before the velocity was increased in the swimming performance trials. Equation (4) acknowledges fish must swim faster than oncoming water velocity to achieve positive ground.

Statistical analyses

Data analyses were performed using R Studio (version 3.1.3; R Core Team, 2012) using the MASS package (Venables and Ripley, 2002). The effect of substrate (two-level factor; rough/smooth) on swimming performance (Ucrit, m s−1) was determined using a one-way analysis of covariance (ANCOVA), with body size (BL) and holding tank number included as a covariates. Minimal adequate models were determined using stepwise simplification, and separate models were run for each species. P-values < 0.05 were considered statistically significant and all data are presented as mean ± s.e.

Results

Effect of substrate on swimming performance

Substrate treatment had a significant effect on critical swimming speeds (Ucrit) of both Me. duboulayi (ANCOVA, Ucrit = F2, 57 = 3.72, P < 0.05) and Mo. adspersa (ANCOVA, Ucrit = F2, 57 = 5.21, P < 0.01) (Fig. 4). Swimming performance was markedly improved in the presence of the rough substrate, with Ucrit increasing by 26.1% and 26.5% in Me. duboulayi (Ucrit-smooth = 0.46 ± 0.01 m s−1, 7.79 ± 0.33 BL s−1 mean ± s.e.; Ucrit-rough = 0.55 ± 0.03 m s−1, 9.83 ± 0.67 BL s−1 mean ± s.e.) and Mo. adspersa (Ucrit-smooth = 0.28 ± 0.0 m s−1, 2.89 ± 0.1 BL s−1, mean ± s.e.; Ucrit-rough = 0.36 ± 0.02 m s−1, 3.66 ± 0.22 BL s−1, mean ± s.e), respectively (Fig. 4). Critical swimming speed was independent of BL and holding tank number in both species (BL P ≥ 0.29; holding tank number P ≥ 0.17) and tank numbers were excluded from minimal adequate models. Mo. adspersa employed a combination of both station-holding and direct, BCF gaits in trials. Me. duboulayi employed direct, BCF gait in all trials but did not station-hold.
Figure 4:

Effect of substrate type (i.e. smooth-light green circles, rough-dark green circles) on swimming performance (critical swimming speed, Ucrit, m s−1) of (A) purple-spotted gudgeon (Mo. adspersa) and (B) crimson-spotted rainbowfish (Me. duboulayi); Swimming performance was improved on rough compared to smooth substrates in both species (P < 0.05; ANCOVA; n = 30 treatment−1), and independent of BL (P ≥ 0.29; ANCOVA; n = 30 treatment−1); Values are shown as individual data points.

Culvert remediation models

Culvert remediation models predicted maximum water speeds allowing successful upstream passage of both species to decrease with increasing culvert length, across the range of 2–60 m (Fig. 5). Maximum water velocities enabling upstream movements varied depending on substrate type, with allowable velocities markedly lower in culverts with smooth compared to rough substrates (Fig. 5). To enable upstream movements of Me. duboulayi through ‘small’ (2 m), ‘medium’ (<20 m) and ‘large’ (20 ≤ 60 m) culverts with a smooth substrate, water velocities would need to be ≤0.46, 0.40 and 0.26 m s−1, respectively (Fig. 5B). However, these water velocities were predicted to increase to ≤ 0.55, 0.49 and 0.35 m s−1 for the same sized culverts (i.e. small, medium and large) if culvert interiors were roughened (Fig. 5B). Similarly, to enable upstream movement of Mo. adspersa through ‘small’, ‘medium’ and ‘large’ smooth culverts, water velocities would need to be as low as ≤0.28, 0.22 and 0.09 m s−1, respectively; whereas these velocities increase to ≤ 0.35, 0.29 and 0.16 m s−1 in roughened culverts (Fig. 5A).
Figure 5:

Modelled traversable water velocities (m s−1) allowing upstream passage of (A) purple-spotted gudgeon (Mo. adspersa) and (B) crimson-spotted rainbowfish (Me. duboulayi), through culverts (2–60 m in length) with rough and smooth substrates; Traversable water velocities are estimated to be higher for culverts with rough compared to smooth substrates; Horizontal dotted lines marks recommended water velocity limits (0.3 m s−1) in Australia (New South Wales).

Discussion

Roughened culverts are often assumed to improve fish swimming performance and upstream passage (Barnard et al., 2015), but empirical assessments are lacking. Introducing fixed river stones into the swim chamber concurrently reduced water velocity and created RVZs along the substratum. Substrate roughening improved relative swimming performance of Me. duboulayi amd Mo. adspersa by ~26%, supporting our original hypothesis (H1). This heightened performance translated into the traversable water velocity models, with maximal allowable water speeds being higher in roughened compared to smooth culverts, suggesting roughening may be an effective remediation approach to improve fish passage.

Improved swimming performance: hydraulic factors

Swimming performance in the roughened treatment was likely improved due to altered hydraulics in the swim chamber. Roughening substrates can increase both the intensity of turbulence (i.e. turbulent kinetic energy; TKE) and the size and number of eddies generated (Papanicolaou and Talebbeydokhti, 2002; Nikora et al., 2003). Mosaics of fluctuating water velocities can be both detrimental and beneficial to fish swimming performance. High intensities of TKE can increase the energetic cost of swimming (Enders et al., 2005) and disorientate/unbalance fish (Tritico and Cotel, 2010). For example, a velocity-dependent cost was identified over pebbled substrates, whereby endurance was reduced and bottom-swimming behaviours were down-regulated at high speeds, suggesting stability was reduced compared to smooth substrates (May and Kieffer, 2017). Alternatively, low intensities of TKE can improve swimming performance if fish exploit low-velocity zones (Powers et al., 1997; Johnson et al., 2012). Juvenile Coho Salmon (Oncorhynchus kisutch), for instance, have been observed to actively exploit reduced-velocity pathways during upstream movement through a culvert test bed (Johnson et al., 2012). Improved swimming performance in the rough treatment here suggests the river stones generated a beneficial level of turbulence which may have lowered the energetic cost of swimming and extended endurance, but further experimentation is required for confirmation. The river stones may have further altered hydraulic conditions by generating a greater number of vortices/eddies (Papanicolaou and Talebbeydokhti, 2002; Nikora et al., 2003). Fish can harness energy from vortices to facilitate forward propulsion and reduce energy expenditure (i.e. kármán gaiting, Liao et al., 2003; Liao and Cotel, 2013). The next progression would be to measure the metabolic cost of transport of fish swimming above roughened and smooth substrates.

Swimming gaits

Mo. adspersa and Me. duboulayi were similarly affected by the rough substrate, with both species experiencing a ~26% increase in swimming performance, despite different gaits employed during swim trials. Mo. adspersa employed station-holding behaviour in all trials, whereas Me. duboulayi did not station-hold and instead, employed a BCF swimming mode. Species utilizing bottom-swimming behaviours (e.g. station-holding and substratum-skimming) are expected to derive a greater net benefit from substrate roughening than fishes reliant on BCF modes, as these energy-saving behaviours are largely ineffective on smooth surfaces (Kieffer et al., 2009). Bottom-swimming behaviours are increased at intermediate velocities over rough compared to smooth substrates in a number of species (Adams et al., 2003; May and Kieffer, 2017). The behaviours underpinning improved performance here remain unidentified and fine-scale behavioural trials are required to determine if station-holding or kármán gaiting are altered by varied combinations of substrate treatments and water velocities. It is likely that Mo. adspersa and Me. Duboulayi benefited from the roughened substrate in different ways but it is clear that roughening can improve swimming performance and energetics of species with disparate morphologies and behaviours.

Implications for culvert remediation and design

Successful passage through culverts is critically important as population declines of both Me. duboulayi and Mo. adspersa have been linked to movement barriers (Boxall et al., 2002; Hattori and Warburton, 2003; Faulks et al., 2008; Carvalho et al., 2012; NSW DPI, 2013). In agreement with H2, culvert remediation models predict substrate roughening to improve passage of both species, with a roughened substrate allowing water velocities to be substantially higher than required for culverts with smooth substrates. Design recommendations in Australia (New South Wales) limit water velocities through culverts to a maximum of 0.3 m s−1. At this velocity maximum culvert transit is likely to be unrestricted for Me. duboulayi for culverts up to 50 m in length, but compromised for Mo. adspersa in culverts with smooth substrates. Passage is predicted to be restricted for Mo. adspersa in culverts 2–15 m in length with a smooth substrate (i.e. maximum allowable velocities 0.23–0.28 m s−1), but roughening remediation increases allowable water velocities to levels exceeding current guidelines (i.e. 0.31–0.35 m s−1). Transit through very long culverts (>20 m) is likely to be restricted for Mo. adspersa even with roughening remediation, and these structures may require additional restoration efforts, such as the installation of rest areas (Feurich et al., 2012). Implementing rough substrates in culverts could be a cost-effective and straight-forward approach to improving fish passage prospects, and far less difficult than engineering culverts that only allow for very low water velocities (e.g. <0.3 m s−1).

Outputs from our traversable water velocity models were similar to other small-bodied species (e.g. Mitchell, 1989 [flathead mullet, Mugil cephalus]; Doehring et al., 2011 [juvenile inanga, Galaxias maculatus]; Rodgers et al., 2014 [empire gudgeon, Hypseleotris compressa]). Similar to Mo. adspersa, many small-bodied species have been identified as weak-swimmers, requiring very low water velocities for upstream movements (ranging 0.05–0.20 m s−1). Reducing water velocity to this extent can be challenging, but culvert roughening may be a solution that allows hydraulic efficiency goals to be met without compromising fish access. Examining the effect of substrate roughening on the swimming performance of a greater number of species, with variations in morphology and swimming gaits, will allow us to gauge the potential benefit and wider application of roughening fish passes. In contrast to our findings, previous research has found roughening to provide no benefit to fish swimming performance (Newbold and Kemp, 2015). Newbold and Kemp (2015) found corrugated roughening of swim chamber walls to have no effect on the swimming performance of juvenile cyprinids (Cyprinus carpio); but this study differed to ours with respect to the position (i.e. walls compared to bottom of swim chamber) and type (i.e. corrugated inserts compared to river stones) of substrate. Roughening the walls of culverts/experimental swim chambers, compared to the bottom, likely differentially affects hydraulic conditions (e.g. level of TKE). Wall roughening has been suggested to generate detrimental levels of turbulence, where the energetic expense of swimming is increased and fish become disorientated/unbalanced (Newbold and Kemp, 2015). Wall roughening may be less effective at facilitating station-holding behaviour compared to substrate roughening, and may not benefit fishes reliant on this behaviour for upstream passage. Further studies examining how swimming performance is altered in response to variation in substrate size (e.g. rock diameter relative to fish size), substrate type (e.g. corrugate surfaces, river stones, concrete with a rough finish) and roughening position (e.g. walls, bottom or entire culvert interior) is warranted.

Although the culvert remediation model presented here can be a powerful tool for decision making, the limitations of this model need to be considered. Estimates of swimming performance derived from non-volitional, laboratory studies can underestimate true ability, as fish often attain greater swimming speeds in open-channel, volitional trials (Hinch and Bratty, 2000; Peake, 2004). The swimming performance data provided here are likely conservative estimates of true swimming ability and in situ validation of these findings is necessary. Nonetheless, our findings provide a baseline assessment of the effectiveness of culvert roughening, and strongly suggest that roughened substrates can improve fish swimming performance and potentially passage prospects. Remediation of existing culverts may have far-reaching benefits by reconnecting the aquatic environment.

Supplementary material

Supplementary material is available at Conservation Physiology online.

Acknowledgements

We would like to thank Professor Hubert Chanson for swimming flume calibration advice and Dr Simon Blomberg for statistical advice. We are grateful to Daniel Gomez Isaza for calibrating the swimming flume. We thank two anonymous reviewers for their invaluable advice, which greatly improved the quality of the manuscript.

Funding

This work was supported by an Australian Research Council Linkage Grant awarded to C.E.F. [LP140100225].

References

Adams
SR
,
Adams
GL
,
Parsons
GR
(
2003
)
Critical swimming speed and behaviour of juvenile shovelnose sturgeon and pallid sturgeon
.
Trans Am Fish Soc
132
:
37
41
.

Andersen
GB
,
Freeman
MC
,
Freeman
BJ
,
Straight
CA
,
Hagler
MM
,
Peterson
JT
(
2012
)
Dealing with uncertainty when assessing fish passage through culvert road crossing
.
Environ Manage
50
:
462
477
. .

Australian Conservation Agency
(
1993
) The action plan for Australian Freshwater Fishes http://www.environment.gov.au/resource/action-plan-australian-freshwater-fishes (last accessed 4 April 2017).

Barnard
RJ
,
Yokers
S
,
Nagygyou
A
,
Quinn
T
(
2015
)
An evaluation of the stream simulation culvert design method in Washington State
.
River Res Appl
31
:
1376
1387
.

Bell
WH
,
Terhune
LDB
(
1970
)
Water tunnel design for fisheries research
.
J Fish Res Board Can
195
:
55
59
.

Bouska
WW
,
Paukert
CP
(
2010
)
Road crossing designs and their impact on fish assemblages of Great Plains streams
.
Trans Am Fish Soc
139
:
214
222
.

Boxall
GD
,
Sandberg
JJ
,
Kroon
FJ
(
2002
)
Population structure, movement and habitat preferences of the purple-spotted gudgeon, Mogurnda adspersa
.
Mar Freshwater Res
53
:
909
917
.

Brett
JR
(
1964
)
The respiratory metabolism and swimming performance of young sockeye salmon
.
J Fish Res Board Can
21
:
1183
1226
. doi:10.1139/F64-103.

Bunt
CM
,
Castro-Santos
T
,
Haro
A
(
2012
)
Performance of fish passage structures at upstream barriers to migration
.
River Res Appl
28
:
457
478
. .

Carvalho
D
,
Sasaki
M
,
Hammer
M
,
Beheregaray
L
(
2012
)
Development of 18 microsatellite markers for the southern purple-spotted gudgeon (Mogurnda adspersa) from the lower Murray-Darling Basin through 454 pyrosequencing
.
Conserv Genet Resour
4
:
339
341
. .

Clapp
DF
,
Clark
RD
,
Diana
JS
(
1990
)
Range, activity, and habitat of large, free-ranging brown trout in a Michigan stream
.
Trans Am Fish Soc
119
:
1022
1034
. .

Clark
SP
,
Toews
JS
,
Tkach
R
(
2014
)
Beyond average velocity: modelling velocity distributions in partially filled culverts to support fish passage guidelines
.
Intl J River Basin Management
12
:
101
110
. .

Davison
W
(
1997
)
The effects of exercise training on teleost fish, a review of recent literature
.
Comp Biochem Phys A
117
:
67
75
. .

Deslauriers
D
,
Kieffer
JD
(
2012
)
Swimming performance and behaviour of young-of-the-year shortnose sturgeon (Acipenser brevirostrum) under fixed and increased velocity swimming tests
.
Can J Zool
90
:
345
351
. .

Doehring
K
,
Young
RG
,
McIntosh
AR
(
2011
)
Factors affecting juvenile galaxiid fish passage at culverts
.
Mar Freshwater Res
62
:
38
45
.

Downie
AT
Kieffer
JD
(
2017
)
A split decision: the impact of substrate type on the swimming behaviour, substrate preference and UCrit of juvenile shortnose sturgeon (Acipenser brevirostrum)
.
Env Biol Fish
100
:
17
25
.

Duguay
JM
,
Lacey
RWJ
(
2016
)
Numerical study of an innovative fish ladder design for perched culverts
.
Can J Civ Eng
43
:
173
181
.

Ead
S
,
Rajaratnam
N
,
Katopodis
C
(
2002
)
Generalized study of hydraulics of culvert fishways
.
J Hydol Eng
128
:
1018
1022
. .

Enders
EC
,
Boisclair
D
,
Roy
AG
(
2005
)
A model of the total swimming costs in turbulent flow for Atlantic salmon (Salmo salar)
.
Can J Fish Aquat Sci
62
:
1079
1089
. .

Faulks
LK
,
Gilligan
DM
,
Beheregaray
LB
(
2008
)
Phylogeography of a threatened freshwater fish (Mogurnda adspersa) in eastern Australia: conservation implications
.
Mar Freshwater Res
59
:
89
96
, .

Fausch
KD
,
Torgersen
CE
,
Baxter
CV
,
Li
HW
(
2002
)
Landscapes to riverscapes: bridging the gap between research and conservation of stream fishes
.
Biosciences
52
:
483
498
. .

Feurich
R
,
Boubee
J
,
Olsen
NRB
(
2012
)
Improvement of fish passage in culverts using CFD
.
Ecol Eng
47
:
1
8
. .

Gehrke
,
PC
,
Gilligan
,
DM
,
Barwick
,
M
(
2002
)
Changes in fish communities of the Shoalhaven River 20 years after construction of Tallowa Dam, Australia
.
River Res Appl
18
:
265
286
. .

Goerig
E
,
Castro-Santos
T
,
Bergeron
NE
(
2016
)
Brook trout passage performance through culverts
.
Can J Fish Aquat Sci
73
:
94
104
.

Gowan
C
,
Fausch
KD
(
2002
)
Why do foraging stream salmonids move during summer
.
Ecology
64
:
139
153
.

Hammer
C.
(
1995
)
Fatigue and exercise tests with fish
.
Comp Biochem Phys A
112
:
1
20
. .

Harvey
BC
(
1991
)
Interactions among stream fishes: predator-induced habitat shifts and larval survival
.
Oecologia
87
:
29
36
. .

Hattori
A
,
Warburton
K
(
2003
)
Microhabitat use by the rainbowfish Melanotaenia duboulayi in a subtropical Australian stream
.
J Ethol
21
:
15
22
. .

Hinch
SG
,
Bratty
J
(
2000
)
Effects of swim speed and activity pattern on success of adult sockeye salmon migration through an area of difficult passage
.
Trans Am Fish Soc
129
:
598
606
. .

Januchowski-Hartley
SR
,
McIntyre
PB
,
Diebel
M
,
Doran
PJ
,
Infante
DM
,
Joseph
C
,
Allan
DJ
(
2013
)
Restoring aquatic ecosystem connectivity requires expanding inventories of both dams and road crossings
.
Front Ecol Environ
11
:
211
217
.

Johnson
EG
,
Pearson
WH
,
Southard
SL
,
Mueller
RP
(
2012
)
Upstream movement of juvenile coho salmon in relation to environmental conditions in a culvert test bed
.
Trans Am Fish Soc
141
:
1520
1531
. .

Kieffer
JD
,
Arsenault
LM
,
Litvak
MK
(
2009
)
Behaviour and performance of juvenile shortnose sturgeon Acipenser brevirostrum at different water velocities
.
J Fish Biol
74
:
674
682
.

Lacey
RWJ
,
Neary
VS
,
Liao
JC
,
Enders
EC
,
Tritico
HM
(
2012
)
The IPOS framework: linking fish swimming performance in altered flows from laboratory experiments to rivers
.
River Res Appl
4
:
429
443
. .

Li
X
,
Deng
ZD
,
Brown
RS
,
Fu
T
,
Martinez
JJ
,
McMichael
GA
,
Skalski
JR
,
Townsend
RL
,
Trumbo
BA
,
Ahmann
ML
, et al. . (
2015
)
Migration depth and residence time of juvenile salmonids in the forebays of hydropower dams prior to passage through turbines or juvenile bypass systems: implications for turbine-passage survival
.
Conserv Physiol
3
:
1
17
. .

Liao
JC
,
Beal
DN
,
Lauder
GV
,
Triantafyllou
MS
(
2003
)
The Kármán gait: novel body kinematics of rainbow trout swimming in a vortex street
.
J Exp Biol
,
206
:
1059
1073
. .

Liao
J
,
Cotel
A
(
2013
) Effects of turbulence on fish swimming in aquaculture.In
Palstra
,
AP
and
Planas
,
JV
, eds,
Swimming Physiology of Fish
.
Springer
Berlin Heidelberg
, pp.
109
127
.

Liermann
CR
,
Nilsson
C
,
Robertson
J
,
Ng
RY
(
2012
)
Implications of dam obstruction for global freshwater fish diversity
.
Bioscience
62
:
539
548
.

Lundqvist
H
,
Rivinoja
P
,
McKinnell
S
(
2008
)
Upstream passage problems for wild Atlantic salmon (Salmo salar L.) in a regulated river and its effect on the population
.
Hydrobiologia
602
:
111
127
. .

May
LE
Kieffer
JD
(
2017
)
The effect of substratum type on aspects of swimming performance and behaviour in shortnose sturgeon Acipenser brevirosrum
.
J Fish Biol
90
:
185
200
.

Mitchell
CP
(
1989
)
Swimming performances of some native freshwater fishes
.
N Z J Mar Freshwater Res
23
:
181
187
. .

Mueller
RP
,
Southard
SS
,
May
CW
,
Pearson
WH
,
Cullinan
VI
(
2008
)
Juvenile coho salmon leaping ability and behavior in an experimental culvert test bed
.
Trans Am Fish Soc
137
:
941
950
. .

Newbold
LR
,
Kemp
PS
(
2015
)
Influence of corrugated boundary hydrodynamics on the swimming performance and behaviour of juvenile common carp (Cyprinus carpio)
.
Ecol Eng
82
:
112
120
. .

New South Wales Department of Primary Industries.
(
2013
) Purple Spotted Gudgeon—Mogurnda adspersa, Priority Action Statement. http://www.dpi.nsw.gov.au/fishing/species-protection/conservation/what-current/endangered-species/purple-spotted-gudgeon/priorities-action-statement-actions-for-the-purple-spotted-gudgeon. (last accessed 8 February 2017).

Nikora
VI
,
Aberle
J
,
Biggs
BJF
,
Jowett
IG
,
Sykes
JRE
(
2003
)
Effects of fish size, time-to-fatigue and turbulence on swimming performance: a case study of Galaxias maculatus
.
J Fish Biol
63
:
1365
1382
. .

Nilsson
C
,
Reidy
CA
,
Dynesius
M
,
Revenga
C
(
2005
)
Fragmentation and flow regulation of the world's large river systems
.
Science
308
:
405
408
. .

Norman
JR
,
Hagler
MM
,
Freeman
MC
,
Freeman
BJ
(
2009
)
Application of a multistate model to estimate culvert effects on movement of small fishes
.
Trans Am Fish Soc
138
:
826
838
. .

Papanicolaou
AN
,
Talebbeydokhti
N
(
2002
)
Discussion of “Turbulent open-channel flow in circular corrugated culverts” by S.A. Ead, N. Rajaratnam, C. Katopodis, F. Ade. J
.
J Hydrol Eng
145
:
547
548
. .

Paul
MJ
,
Meyer
JL
(
2001
)
Streams in the urban landscape
.
Annu Rev Ecol Evol Syst
32
:
333
365
. .

Peake
S
(
2004
)
An evaluation of the use of critical swimming speed for determination of culvert water velocity criteria for smallmouth bass
.
Trans Am Fish Soc
133
:
1472
1479
. .

Peake
S
,
Beamish
FWH
,
McKinley
RS
,
Scruton
DA
,
Katopodis
C
(
1997
)
Relating swimming performance of lake sturgeon, Acipenser fulvescens, to fishway design
.
Can J Fish Aquat Sci
54
:
1361
1366
. .

Pearson
WH
,
Southard
SL
,
May
CW
,
Skalski
JR
,
Townsend
RL
,
Horner-Devine
AR
,
Thurman
DR
,
Hotchkiss
RH
,
Morrsion
RR
,
Richmond
MC
, et al.  (
2006
)
Research on the upstream passage of juvenile salmon through culverts: retrofit baffles. Final Report Prepared for the Washington State Department of Transportation: WSDOT agreement No. GCA2677
.
Battelle Memorial Institute
,
Washington
.

Powers
PD
,
Bates
K
,
Burns
T
,
Gowen
B
,
Whitney
R
(
1997
) Culvert hydraulics related to upstream juvenile salmon passage. Washington Department of Fish and Wildlife, Lands and Restoration Services Program, Project 982740,
Olympia
.

Pusey
BJ
,
Arthington
AH
,
Read
MG
(
1993
)
Spatial and temporal variation in fish assemblage structure in the Mary River, south-eastern Queensland: the influence of habitat structure
.
Environ Biol Fish
37
:
355
380
. .

Quinn
JW
,
Kwak
TJ
(
2003
)
Fish assemblage changes in an Ozark River after impoundment: a long-term perspective
.
Trans Am Fish Soc
132
:
110
119
. .

R Core Team
(
2012
)
R: a Language and Environment for Statistical Computing
.
R Foundation for Statistical Computing
,
Vienna, Austria
. ISBN 3-900051-07-0, http://www.R-project.org/.

Richmond
MC
,
Deng
Z
,
Guensch
GR
,
Tritico
H
,
Pearson
WH
(
2007
)
Mean flow and turbulence characteristics of full-scale spiral corrugated culvert with implications for fish passage
.
Ecol Eng
30
:
333
340
. .

Rodgers
EM
,
Cramp
RL
,
Gordos
M
,
Weier
A
,
Fairfall
S
,
Riches
M
,
Franklin
CE
(
2014
)
Facilitating upstream passage of small-bodied fishes: linking the thermal dependence of swimming ability to culvert design
.
Mar Freshwater Res
65
:
710
719
. .

Schneider
CA
,
Rasband
WS
,
Eliceiri
KW
(
2012
)
NIG Image to ImageJ: 25 years of image analysis
.
Nat Methods
9
:
671
675
.

Starrs
D
,
Ebner
BC
,
Lintermans
M
,
Fulton
CJ
(
2011
)
Using sprint swimming performance to predict upstream passage of the endangered Macquarie perch in a highly regulated river
.
Fish Manag Ecol
18
:
360
374
. .

Tritico
HM
,
Cotel
AJ
(
2010
)
The effects of turbulent eddies on the stability and critical swimming speed of creek chub (Semotilus atromaculatus)
.
J Exp Biol
213
:
2284
2293
. .

Van der Ree
R
,
Smith
DJ
,
Grilo
C
(
2015
) Solutions to the impacts of roads and other barriers on fish and fish habitat. In
Ottburg
F
,
Blank
M
, eds,
Handbook of Road Ecology
, First Edition,
John Wiley & Sons, Ltd
, Chichester, West Sussex, UK, pp
364
372
.

Venables
WN
,
Ripley
BD
(
2002
)
Modern Applied Statistics with S
. Fourth Edition.
Springer
,
New York
. ISBN 0-387-95457-0.

Warren
ML
,
Pardew
MG
(
1998
)
Road crossings as barriers to small-stream fish movement
.
Trans Am Fish Soc
127
:
637
644
.

Webb
PW
(
1989
)
Station-holding by three species of benthic fishes
.
J Exp Biol
145
:
303
320
.

Webb
PW
(
1998
) Swimming. In
Evans
DH
, ed,
The Physiology of Fishes
.
CRC Press
,
Boca Raton
, pp
3
24
.

Williams
RJ
,
Watford
FA
(
1997
)
Identification of structures restricting tidal flow in New South Wales, Australia
.
Wet Ecol Manag
5
:
87
97
. .

Yamamoto
S
,
Morita
K
,
Koizumi
I
,
Maekawa
K
(
2004
)
Genetic differentiation of white-spotted charr (Salverlinus leucomaenis) populations after habitat fragmentation: spatial–temporal changes in gene frequencies
.
Conserv Genet
5
:
529
538
. .

Author notes

Editor: Steven Cooke

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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