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Essie M. Rodgers, Breeana M. Heaslip, Rebecca L. Cramp, Marcus Riches, Matthew A. Gordos, Craig E. Franklin, Substrate roughening improves swimming performance in two small-bodied riverine fishes: implications for culvert remediation and design, Conservation Physiology, Volume 5, Issue 1, 2017, cox034, https://doi.org/10.1093/conphys/cox034
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Abstract
Worldwide declines in riverine fish abundance and diversity have been linked to the fragmentation of aquatic habitats through the installation of instream structures (e.g. culverts, dams, weirs and barrages). Restoring riverine connectivity can be achieved by remediating structures impeding fish movements by, for example, replacing smooth substrates of pipe culverts with naturalistic substrates (i.e. river stones; culvert roughening). However, empirical evaluations of the efficacy of such remediation efforts are often lacking despite the high economic cost. We assessed the effectiveness of substrate roughening in improving fish swimming performance and linked this to estimates of upstream passage success. Critical swimming speeds (Ucrit) of two small-bodied fish, purple-spotted gudgeon (Mogurnda adspersa; 7.7–11.6 cm total length, BL) and crimson-spotted rainbowfish (Melanotaenia duboulayi; 4.2–8.7 cm BL) were examined. Swimming trials were conducted in a hydraulic flume fitted with either a smooth acrylic substrate (control) or a rough substrate with fixed river stones. Swimming performance was improved on the rough compared to the smooth substrate, with Mo. adspersa (Ucrit-smooth = 0.28 ± 0.0 m s−1, 2.89 ± 0.1 BL s−1, Ucrit-rough = 0.36 ± 0.02 m s−1, 3.66 ± 0.22 BL s−1, mean ± s.e) and Me. duboulayi (Ucrit-smooth = 0.46 ± 0.01 m s−1, 7.79 ± 0.33 BL s−1; Ucrit-rough = = 0.55 ± 0.03 m s−1, 9.83 ± 0.67 BL s−1, mean ± s.e.) both experiencing a 26% increase in relative Ucrit. Traversable water velocity models predicted maximum water speeds allowing successful upstream passage of both species to substantially increase following roughening remediation. Together these findings suggest culvert roughening may be a solution which allows hydraulic efficiency goals to be met, without compromising fish passage.
Introduction
Disruption of riverine connectivity is one of the leading threats to the persistence of riverine fishes (Paul and Meyer, 2001; Nilsson et al., 2005; Liermann et al., 2012). Instream structures (e.g. dams, weirs, barrages and culverts) can impede up- and down-stream fish movements by creating physical (e.g. dam walls), hydraulic (e.g. excessive water velocities), physiochemical (e.g. low dissolved oxygen) and behavioural (e.g. low light-levels) barriers. Free and efficient movement throughout waterways is essential to the survival and reproductive success of many fishes (Fausch et al., 2002). Small-scale, intra-biome movements can be necessary for defending territory, avoiding predators and accessing food (Clapp et al., 1990; Harvey, 1991); whereas large-scale, inter-biome movements are often necessary for reaching spawning grounds, habitat selection and maintenance of genetic diversity (Gowan and Fausch, 2002; Yamamoto et al., 2004). Artificial structures can disrupt these processes and have been linked to local extinction events globally (Gehrke et al., 2002; Quinn and Kwak, 2003; Lundqvist et al., 2008).
Fish passes have been developed to facilitate fish movements around instream barriers, but a comprehensive set of conditions conducive to optimizing passage (e.g. water velocity, turbulence and temperature, and structure slope, height and length) is unavailable for many species. Research in this area has predominantly focused on enabling fish to bypass large obstructions such as dams and weirs (Starrs et al., 2011; Bunt et al., 2012; Li et al., 2015). Designing passes at small but numerous barriers, such as culverts, is however receiving increasing attention (Mueller et al. 2008; Feurich et al. 2012; Rodgers et al., 2014).
The combined effect of culverts and other small barriers (e.g. low head dams and water diversions) on fish movement is estimated to be greater than that of large dams due to their high numbers (Januchowski-Hartley et al., 2013). Culverts allow for continued water connectivity below road-crossings but generally at greater velocities than the natural waterway because of a reduced cross-sectional area, creating hydraulic barriers (Ead et al., 2002; Norman et al., 2009). Culverts account for the majority of hydraulic barriers in developed waterways (Williams and Watford, 1997; Bouska and Paukert, 2010) and were originally designed to maximize water transport with little consideration of fish access (Warren and Pardew, 1998).
Design criteria of culverts have been revised in recent years to improve fish passage (Barnard et al., 2015; Van der Ree et al., 2015; Duguay and Lacey, 2016) but many existing structures require remediation (Andersen et al., 2012). While there are numerous remediation approaches, the effectiveness of culvert roughening (i.e. replacing smooth concrete substrates with rough, naturalistic substrates such as river stones and plants) has received little investigation (Newbold and Kemp, 2015; Goerig et al., 2016). Culvert roughening is predicted to improve fish passage by two mechanisms: via lowering the energetic cost of swimming and by increasing behavioural attraction to a more naturalistic structure. Roughened culverts have altered hydraulic properties so that reduced-velocity zones (RVZs) are created along the structure's base and walls (Powers et al., 1997; Richmond et al., 2007). Fish are hypothesized to utilize RVZs during passage, thereby lowering energetic costs (i.e. RVZ hypothesis; Powers et al. 1997; Richmond et al., 2007; Johnson et al. 2012). Support for the RVZ hypothesis has been documented in several species but these studies used corrugated metal substrates to increase roughness (Richmond et al., 2007; Johnson et al., 2012; Clark et al., 2014). Recent comparisons of pebbled and smooth substrates found no derived benefits to the swimming performance of juvenile shortnose sturgeon, Acipenser brevirostrum (Downie and Kieffer, 2017). This lack of energetic advantage was attributed to a small pebble size, relative to fish body size (Downie and Kieffer, 2017). The RVZ hypothesis remains untested for larger, naturalistic substrates, such as river stones. In addition to creating RVZs, roughening can also increase hydrodynamic heterogeneity (i.e. turbulence, Richmond et al., 2007). Turbulent flows are characterized by a mosaic of constantly fluctuating water speeds that fish may take advantage of, by timing swimming efforts with pockets of low-velocity or exploiting eddies to facilitate propulsion; a strategy termed kármán gaiting (Liao et al., 2003; Liao and Cotel, 2013).
Remediation approaches can be economically costly, with finite funds directed towards waterway restoration, deeming it imperative to ensure restoration efforts benefit target species. The aim of this study was twofold: (i) to determine if fish swimming performance is improved above rough compared to smooth substrates, and (ii) to model and evaluate the effectiveness of substrate roughening as a remediation strategy. Two small-bodied (<12 cm, total length, BL), freshwater species were used to address these aims: purple-spotted gudgeon, Mogurnda adspersa (Castelnau, 1878), and crimson-spotted rainbowfish, Melanotaenia duboulayi (Linnaeus, 1758). These species are sympatric and endemic to Australia, with populations spread along coastal catchments in south-east Queensland and northern New South Wales (Australian Conservation Agency, 1993). Both species are potamodromous, migrating within freshwater, and have experienced severe population declines in association with waterway development and fragmentation (Pusey et al., 1993; Boxall et al., 2002; Faulks et al., 2008; Carvalho et al., 2012). The purple-spotted gudgeon is listed as an endangered species under the ‘Fisheries Management Act, 1994’ in New South Wales, Australia, and is the focus of ongoing conservation initiatives. Small-bodied species were selected as this group is underrepresented in fish passage research, with the focus generally towards large, strong-swimming, iconic, recreational or commercial species (Pearson et al., 2006; Lacey et al., 2012). We predicted that: (H1) swimming performance would be markedly improved over rough compared to smooth substrates, and (H2) culvert remediation models would show roughening to be an effective approach, exemplified by higher maximum water velocities allowing successful upstream passage of fish.
Materials and methods
Fish maintenance
Crimson-spotted rainbowfish (Melanotaenia duboulayi) (n = 60; BL: mean ± s.d. 5.93 ± 0.9 cm; range 4.2–8.7 cm) and purple-spotted gudgeon (Mogurnda adspersa) (n = 60; BL: mean ± s.d. 9.99 ± 0.8 cm; range 7.71–11.58 cm) were obtained from a commercial hatchery (Australian Native Fish Enterprises, Burpengary, Queensland, Australia). Fish were housed in 45 L glass aquaria (L × W × H, 60 × 30 × 30 cm) at a stocking density of approximately 3 g (body mass) L−1 (Mo. adspersa) and 1 g L−1 (Me. duboulayi). Aquaria contained Brisbane city tap water conditioned with water primer (Prime®, Seachem, Georgia, USA), maintained at a constant temperature (25 ± 1°C). Water chemistry (pH, nitrogen and ammonia) was monitored weekly to ensure water quality. Fish were fed commercially supplied food pellets (Hikari® Tropical Micro Wafers and TTanked Tropical+ food pellets) daily to satiation. The photoperiod was set to a 12-h light: 12-h dark cycle.
Substrate design
Substrates used in the swimming trials: (A) roughened substrate with fixed river stones and (B) smooth acrylic panel; River stones varied in shape and size but the majority were ~3 × 2 × 1 cm; l × w × h; River stone length equated to 0.3 BL and 0.5 BL for purple-spotted gudgeon (Mo. adspersa) and crimson-spotted rainbowfish (Me. duboulayi), respectively.
Swim chamber calibration
Water velocity (m s−1; represented by colour) heat maps of the swim chamber with smooth (left hand panel) and rough (right hand panel) substrates at three separate propeller speeds: 3.3 (A, B), 11.3 (C, D) and 21.3 (E, F) RPS (revolutions s−1); A 5 × 5 cross-section in the centre of the swim chamber was calibrated along the Y- and Z-planes, using a Pitot tube and custom-built air-water manometer. Time-averaged water velocities above the rough substrate were consistently lower than the smooth substrate at the same propeller speed.
Water velocity (m s−1, represented by colour) heat maps of the swim chamber with smooth (left hand panel) and rough (right hand panel) substrates at a range time-averaged velocities (i.e. 0.38 m s−1A–B, 0.52 m s−1C–D, 0.76 m s−1E–F); A 5 × 5 cross-section in the centre of the swim chamber was calibrated along the Y- and Z-planes, using a Pitot tube and custom-built, air-water manometer; Hydrodynamic heterogeneity was increased and a greater number of RVZs were visualized along the base of the swim chamber in the rough compared to the smooth treatment.
Swimming performance
Culvert remediation models
Statistical analyses
Data analyses were performed using R Studio (version 3.1.3; R Core Team, 2012) using the MASS package (Venables and Ripley, 2002). The effect of substrate (two-level factor; rough/smooth) on swimming performance (Ucrit, m s−1) was determined using a one-way analysis of covariance (ANCOVA), with body size (BL) and holding tank number included as a covariates. Minimal adequate models were determined using stepwise simplification, and separate models were run for each species. P-values < 0.05 were considered statistically significant and all data are presented as mean ± s.e.
Results
Effect of substrate on swimming performance
Effect of substrate type (i.e. smooth-light green circles, rough-dark green circles) on swimming performance (critical swimming speed, Ucrit, m s−1) of (A) purple-spotted gudgeon (Mo. adspersa) and (B) crimson-spotted rainbowfish (Me. duboulayi); Swimming performance was improved on rough compared to smooth substrates in both species (P < 0.05; ANCOVA; n = 30 treatment−1), and independent of BL (P ≥ 0.29; ANCOVA; n = 30 treatment−1); Values are shown as individual data points.
Culvert remediation models
Modelled traversable water velocities (m s−1) allowing upstream passage of (A) purple-spotted gudgeon (Mo. adspersa) and (B) crimson-spotted rainbowfish (Me. duboulayi), through culverts (2–60 m in length) with rough and smooth substrates; Traversable water velocities are estimated to be higher for culverts with rough compared to smooth substrates; Horizontal dotted lines marks recommended water velocity limits (0.3 m s−1) in Australia (New South Wales).
Discussion
Roughened culverts are often assumed to improve fish swimming performance and upstream passage (Barnard et al., 2015), but empirical assessments are lacking. Introducing fixed river stones into the swim chamber concurrently reduced water velocity and created RVZs along the substratum. Substrate roughening improved relative swimming performance of Me. duboulayi amd Mo. adspersa by ~26%, supporting our original hypothesis (H1). This heightened performance translated into the traversable water velocity models, with maximal allowable water speeds being higher in roughened compared to smooth culverts, suggesting roughening may be an effective remediation approach to improve fish passage.
Improved swimming performance: hydraulic factors
Swimming performance in the roughened treatment was likely improved due to altered hydraulics in the swim chamber. Roughening substrates can increase both the intensity of turbulence (i.e. turbulent kinetic energy; TKE) and the size and number of eddies generated (Papanicolaou and Talebbeydokhti, 2002; Nikora et al., 2003). Mosaics of fluctuating water velocities can be both detrimental and beneficial to fish swimming performance. High intensities of TKE can increase the energetic cost of swimming (Enders et al., 2005) and disorientate/unbalance fish (Tritico and Cotel, 2010). For example, a velocity-dependent cost was identified over pebbled substrates, whereby endurance was reduced and bottom-swimming behaviours were down-regulated at high speeds, suggesting stability was reduced compared to smooth substrates (May and Kieffer, 2017). Alternatively, low intensities of TKE can improve swimming performance if fish exploit low-velocity zones (Powers et al., 1997; Johnson et al., 2012). Juvenile Coho Salmon (Oncorhynchus kisutch), for instance, have been observed to actively exploit reduced-velocity pathways during upstream movement through a culvert test bed (Johnson et al., 2012). Improved swimming performance in the rough treatment here suggests the river stones generated a beneficial level of turbulence which may have lowered the energetic cost of swimming and extended endurance, but further experimentation is required for confirmation. The river stones may have further altered hydraulic conditions by generating a greater number of vortices/eddies (Papanicolaou and Talebbeydokhti, 2002; Nikora et al., 2003). Fish can harness energy from vortices to facilitate forward propulsion and reduce energy expenditure (i.e. kármán gaiting, Liao et al., 2003; Liao and Cotel, 2013). The next progression would be to measure the metabolic cost of transport of fish swimming above roughened and smooth substrates.
Swimming gaits
Mo. adspersa and Me. duboulayi were similarly affected by the rough substrate, with both species experiencing a ~26% increase in swimming performance, despite different gaits employed during swim trials. Mo. adspersa employed station-holding behaviour in all trials, whereas Me. duboulayi did not station-hold and instead, employed a BCF swimming mode. Species utilizing bottom-swimming behaviours (e.g. station-holding and substratum-skimming) are expected to derive a greater net benefit from substrate roughening than fishes reliant on BCF modes, as these energy-saving behaviours are largely ineffective on smooth surfaces (Kieffer et al., 2009). Bottom-swimming behaviours are increased at intermediate velocities over rough compared to smooth substrates in a number of species (Adams et al., 2003; May and Kieffer, 2017). The behaviours underpinning improved performance here remain unidentified and fine-scale behavioural trials are required to determine if station-holding or kármán gaiting are altered by varied combinations of substrate treatments and water velocities. It is likely that Mo. adspersa and Me. Duboulayi benefited from the roughened substrate in different ways but it is clear that roughening can improve swimming performance and energetics of species with disparate morphologies and behaviours.
Implications for culvert remediation and design
Successful passage through culverts is critically important as population declines of both Me. duboulayi and Mo. adspersa have been linked to movement barriers (Boxall et al., 2002; Hattori and Warburton, 2003; Faulks et al., 2008; Carvalho et al., 2012; NSW DPI, 2013). In agreement with H2, culvert remediation models predict substrate roughening to improve passage of both species, with a roughened substrate allowing water velocities to be substantially higher than required for culverts with smooth substrates. Design recommendations in Australia (New South Wales) limit water velocities through culverts to a maximum of 0.3 m s−1. At this velocity maximum culvert transit is likely to be unrestricted for Me. duboulayi for culverts up to 50 m in length, but compromised for Mo. adspersa in culverts with smooth substrates. Passage is predicted to be restricted for Mo. adspersa in culverts 2–15 m in length with a smooth substrate (i.e. maximum allowable velocities 0.23–0.28 m s−1), but roughening remediation increases allowable water velocities to levels exceeding current guidelines (i.e. 0.31–0.35 m s−1). Transit through very long culverts (>20 m) is likely to be restricted for Mo. adspersa even with roughening remediation, and these structures may require additional restoration efforts, such as the installation of rest areas (Feurich et al., 2012). Implementing rough substrates in culverts could be a cost-effective and straight-forward approach to improving fish passage prospects, and far less difficult than engineering culverts that only allow for very low water velocities (e.g. <0.3 m s−1).
Outputs from our traversable water velocity models were similar to other small-bodied species (e.g. Mitchell, 1989 [flathead mullet, Mugil cephalus]; Doehring et al., 2011 [juvenile inanga, Galaxias maculatus]; Rodgers et al., 2014 [empire gudgeon, Hypseleotris compressa]). Similar to Mo. adspersa, many small-bodied species have been identified as weak-swimmers, requiring very low water velocities for upstream movements (ranging 0.05–0.20 m s−1). Reducing water velocity to this extent can be challenging, but culvert roughening may be a solution that allows hydraulic efficiency goals to be met without compromising fish access. Examining the effect of substrate roughening on the swimming performance of a greater number of species, with variations in morphology and swimming gaits, will allow us to gauge the potential benefit and wider application of roughening fish passes. In contrast to our findings, previous research has found roughening to provide no benefit to fish swimming performance (Newbold and Kemp, 2015). Newbold and Kemp (2015) found corrugated roughening of swim chamber walls to have no effect on the swimming performance of juvenile cyprinids (Cyprinus carpio); but this study differed to ours with respect to the position (i.e. walls compared to bottom of swim chamber) and type (i.e. corrugated inserts compared to river stones) of substrate. Roughening the walls of culverts/experimental swim chambers, compared to the bottom, likely differentially affects hydraulic conditions (e.g. level of TKE). Wall roughening has been suggested to generate detrimental levels of turbulence, where the energetic expense of swimming is increased and fish become disorientated/unbalanced (Newbold and Kemp, 2015). Wall roughening may be less effective at facilitating station-holding behaviour compared to substrate roughening, and may not benefit fishes reliant on this behaviour for upstream passage. Further studies examining how swimming performance is altered in response to variation in substrate size (e.g. rock diameter relative to fish size), substrate type (e.g. corrugate surfaces, river stones, concrete with a rough finish) and roughening position (e.g. walls, bottom or entire culvert interior) is warranted.
Although the culvert remediation model presented here can be a powerful tool for decision making, the limitations of this model need to be considered. Estimates of swimming performance derived from non-volitional, laboratory studies can underestimate true ability, as fish often attain greater swimming speeds in open-channel, volitional trials (Hinch and Bratty, 2000; Peake, 2004). The swimming performance data provided here are likely conservative estimates of true swimming ability and in situ validation of these findings is necessary. Nonetheless, our findings provide a baseline assessment of the effectiveness of culvert roughening, and strongly suggest that roughened substrates can improve fish swimming performance and potentially passage prospects. Remediation of existing culverts may have far-reaching benefits by reconnecting the aquatic environment.
Supplementary material
Supplementary material is available at Conservation Physiology online.
Acknowledgements
We would like to thank Professor Hubert Chanson for swimming flume calibration advice and Dr Simon Blomberg for statistical advice. We are grateful to Daniel Gomez Isaza for calibrating the swimming flume. We thank two anonymous reviewers for their invaluable advice, which greatly improved the quality of the manuscript.
Funding
This work was supported by an Australian Research Council Linkage Grant awarded to C.E.F. [LP140100225].
References
Author notes
Editor: Steven Cooke




