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Distribution of highly diverging regions across the genome in C. betico...
Published: 28 April 2025
Fig. 5.
Distribution of highly diverging regions across the genome in C. beticola populations from wild and domesticated hosts. a) PCA based on SNP data from the UK C. beticola isolates. Color reflects the host from which each isolate was obtained. Inset: a map of UK with the sampling sites marked. b) G
Journal Article
Genome-wide Evidence of Host Specialization in Wild and Farmland Populations of the Fungal Leaf Spot Pathogen, Cercospora beticola
Genome Biology and Evolution, Volume 17, Issue 4, April 2025, evaf053, https://doi.org/10.1093/gbe/evaf053
Published: 28 April 2025
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Evolutionary relationship between C. beticola populations. a) Phyl...
Published: 28 April 2025
Fig. 4.
Evolutionary relationship between C. beticola populations. a) Phylogenetic tree using PoMo (Maximum likelihood inference, loglikelihood: −857,128.545) to assess the evolutionary relationship between C. beticola populations. Branch numbers reflect maximum likelihood bootstrap values. The tree was
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Collection of C. beticola isolates across continents used to infer...
Published: 28 April 2025
Fig. 1.
Collection of C. beticola isolates across continents used to infer pathogen population structure and dispersal. a) Nucleotide diversity of C. beticola populations in each geographic region. Kruskal–Wallis test with post-hoc pairwise Wilcoxon was used to identify significant differences ( P <
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Global population structure of C. beticola. a, b) DCA, where the d...
Published: 28 April 2025
Fig. 2.
Global population structure of C. beticola. a, b) DCA, where the different colors reflect a) the original host of the isolate and b) the geographical origin. Shapes reflect the original host in both panels. c) The program ADMIXTURE was used to compute population structure of the species. Most fit
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Neighbor network of C. beticola isolates. The network was inferred...
Published: 28 April 2025
Fig. 3.
Neighbor network of C. beticola isolates. The network was inferred with SplitsTree v. 6. The main clusters identified by the analyses are colored according to the host from which the isolates were originally obtained (yellow = sugar beet, green = sea beet, red = Table beet). Moreover, the tree inc
Journal Article
ACCEPTED MANUSCRIPT
Whole genome duplication in the genomics era: The hidden gems in invertebrates?
Genome Biology and Evolution, evaf073, https://doi.org/10.1093/gbe/evaf073
Published: 25 April 2025
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The correlations between SSD and total ARE counts among orders. ARE counts ...
Published: 18 April 2025
Fig. 1.
The correlations between SSD and total ARE counts among orders. ARE counts 50 kb upstream/downstream of a TSS, natural-log-transformed. Each point on the plot is a species, and the slope of the line is derived from phylogenetically controlled linear models (see methods).
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Gene-centric analyses of the linear model SSD ∼ log(HRE) + log(body_size). ...
Published: 18 April 2025
Fig. 3.
Gene-centric analyses of the linear model SSD ∼ log(HRE) + log(body_size). Each point is a gene represented by at least ten rodent species that show variability in HRE counts within 50 kb of TSS. The x -axis indicates the effect of HRE count on SSD. The y -axis indicates the −log 10 × P -value.
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Sample distribution and genetic structure of Atlantic salmon lines from wes...
Published: 18 April 2025
Fig. 1.
Sample distribution and genetic structure of Atlantic salmon lines from western Norway and North America. a) Geographic distribution of Atlantic salmon population in North America. Aquaculture samples were used from Gaspe (Gaspe, n = 16), St John River ( n = 53), and Penobscot River ( n = 11). W
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Cross-population test on extended haplotype homozygosity (XP-EHH). Each dot...
Published: 18 April 2025
Fig. 2.
Cross-population test on extended haplotype homozygosity (XP-EHH). Each dot is SNPs, while the x axis displays the position across the genome. The y axis represents the −log10( P -value the XP-EHH (cross population extended haplotype homozygosity) values. Diamonds indicate SNPs with significantl
Journal Article
Sexual Size Dimorphism Correlates With the Number of Androgen Response Elements in Mammals, But Only in Small-Bodied Species
Genome Biology and Evolution, Volume 17, Issue 4, April 2025, evaf068, https://doi.org/10.1093/gbe/evaf068
Published: 18 April 2025
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The five orders represented by at least 20 species (number in parentheses)....
Published: 18 April 2025
Fig. 2.
The five orders represented by at least 20 species (number in parentheses). Relationship between average body mass, SSD, ARE counts, and ERE counts. For SSD, the vertical dashed line indicates SSD = 0, species to the right are male-larger species to the left are female-larger. For all other phenotyp
Journal Article
Parallel Selection in Domesticated Atlantic Salmon from Divergent Founders Including on Whole-Genome Duplication-derived Homeologous Regions
Genome Biology and Evolution, Volume 17, Issue 4, April 2025, evaf063, https://doi.org/10.1093/gbe/evaf063
Published: 18 April 2025
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The MHC region under parallel selective sweeps in both continents. a) Zoome...
Published: 18 April 2025
Fig. 3.
The MHC region under parallel selective sweeps in both continents. a) Zoomed-in view of XP-EHH results on the MHC loci on chromosomes 14 and 27, exhibiting parallel selective sweeps. The x axis shows the genomic position, and the y axis represents the −log10( P -value) of the XP-EHH (cross popul
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Expression of genes under parallel selection or parallel selection on the h...
Published: 18 April 2025
Fig. 4.
Expression of genes under parallel selection or parallel selection on the homeologous regions in early development stages and mature tissues. Gene expression is represented as log-transformed TPM. The sweep panel indicates the gene that has undergone selective sweeps in North America or Western Norw
Journal Article
ACCEPTED MANUSCRIPT
Six newly sequenced chloroplast genomes from quadriflagellate Chlamydomonadales (Chlorophyceae): phylogeny and comparative genome analyses
Genome Biology and Evolution, evaf074, https://doi.org/10.1093/gbe/evaf074
Published: 18 April 2025
Journal Article
ACCEPTED MANUSCRIPT
A pedigree-based map of crossovers and non-crossovers in aye-ayes (Daubentonia madagascariensis)
Genome Biology and Evolution, evaf072, https://doi.org/10.1093/gbe/evaf072
Published: 17 April 2025
Journal Article
ACCEPTED MANUSCRIPT
Genomic exploration of climate-driven evolution and evolutionary convergence in forest pathogens
Genome Biology and Evolution, evaf069, https://doi.org/10.1093/gbe/evaf069
Published: 17 April 2025
Journal Article
ACCEPTED MANUSCRIPT
Chromosome-level genome assembly of the Asian tramp snail Bradybaena similaris (Stylommatophora: Camaenidae)
Genome Biology and Evolution, evaf070, https://doi.org/10.1093/gbe/evaf070
Published: 12 April 2025
