
Volume 16, Issue 4
April 2024
Cover image
Cover image

While we know a lot about the processes affecting mutation accumulation in E.coli in a laboratory setup, less is known about processes governing it in the course of evolution of natural lineages. This is what we depict in the image with three strains of E. coli with known mutational profiles in the Petri dish, and the wild roaming E. coli for which the major mutational processes are unknown. Image idea: Sofya Garushyants Drawing: Sarah R.A. Stone. To know more about the mutational signatures in E. coli, click on this link: https://doi.org/10.1093/gbe/evae035
EISSN 1759-6653
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Volume 16, Issue 4, April 2024
Special Section: Protein Evolution Beyond Gene Duplication
Article
High-throughput Selection of Human de novo-emerged sORFs with High Folding Potential
Margaux Aubel and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae069, https://doi.org/10.1093/gbe/evae069
Highlights
Highlight: Microbial Manipulators of Insect Sexual Reproduction
Casey McGrath
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae071, https://doi.org/10.1093/gbe/evae071
Perspectives
Microbial Diversity and Open Questions about the Deep Tree of Life
Laura Eme and Daniel Tamarit
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae053, https://doi.org/10.1093/gbe/evae053
Technological Development and Advances for Constructing and Analyzing Plant Pangenomes
Haifei Hu and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae081, https://doi.org/10.1093/gbe/evae081
Letters
Using a Handful of Transcriptomes to Detect Sex-Linked Markers and Develop Molecular Sexing Assays in a Species with Homomorphic Sex Chromosomes
Paul A Saunders and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae060, https://doi.org/10.1093/gbe/evae060
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data
David A Duchêne and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae064, https://doi.org/10.1093/gbe/evae064
Retention of an Endosymbiont for the Production of a Single Molecule
Arkadiy I Garber and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae075, https://doi.org/10.1093/gbe/evae075
Articles
Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor
Marie Morel and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae040, https://doi.org/10.1093/gbe/evae040
Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations
Gabriel David and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae049, https://doi.org/10.1093/gbe/evae049
Conserved Noncoding Elements Evolve Around the Same Genes Throughout Metazoan Evolution
Paul Gonzalez and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae052, https://doi.org/10.1093/gbe/evae052
Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors
Sofya K Garushyants and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae035, https://doi.org/10.1093/gbe/evae035
Dollo Parsimony Overestimates Ancestral Gene Content Reconstructions
Alex Gàlvez-Morante and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae062, https://doi.org/10.1093/gbe/evae062
Reconstructing the Genetic Relationship between Ancient and Present-Day Siberian Populations
Haechan Gill and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae063, https://doi.org/10.1093/gbe/evae063
Different Host–Endogenous Retrovirus Relationships between Mammals and Birds Reflected in Genome-Wide Evolutionary Interaction Patterns
Wanjing Zheng and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae065, https://doi.org/10.1093/gbe/evae065
Identification of Parthenogenesis-Inducing Effector Proteins in Wolbachia
Laura C Fricke and Amelia R I Lindsey
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae036, https://doi.org/10.1093/gbe/evae036
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery
Phred M Benham and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae067, https://doi.org/10.1093/gbe/evae067
Extensive Loss and Gain of Conserved Noncoding Elements During Early Teleost Evolution
Elisavet Iliopoulou and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae061, https://doi.org/10.1093/gbe/evae061
Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota
Anna Odelgard and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae068, https://doi.org/10.1093/gbe/evae068
Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
Michelle M Pena and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae074, https://doi.org/10.1093/gbe/evae074
Patterns of Change in Nucleotide Diversity Over Gene Length
Farhan Ali
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae078, https://doi.org/10.1093/gbe/evae078
Evolution of Phenotypic Variance Provides Insights into the Genetic Basis of Adaptation
Wei-Yun Lai and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae077, https://doi.org/10.1093/gbe/evae077
Genome Resources
The genome of the rayed Mediterranean limpet Patella caerulea (Linnaeus, 1758)
Gwyneth Halstead-Nussloch and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae070, https://doi.org/10.1093/gbe/evae070
Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis
Aurélien De Jode and others
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae076, https://doi.org/10.1093/gbe/evae076
Correction
Correction to: Increased Sampling and Intracomplex Homologies Favor Vertical Over Horizontal Inheritance of the Dam1 Complex
Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae072, https://doi.org/10.1093/gbe/evae072
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