Volume 17, Issue 3
March 2025
Cover image
Cover image
DNAseq genome coverage of each of the 22 chromosomes of Prasinoderma coloniale, highlighting the duplication of chromosome 18. The image is overlaid with a light micrograph of P. coloniale cultures, illustrating the species’ characteristic tendency to form small colonies. The first single nucleotide de novo mutation on chromosome 1 is displayed in bold at the bottom of the image, shown through an alignment of the sequence of the ancestral line and one mutation accumulation line. https://doi.org/10.1093/gbe/evaf026
EISSN 1759-6653
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Volume 17, Issue 3, March 2025
Letter
Hematophagy Generates a Convergent Genomic Signature in Mosquitoes and Sandflies
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf044, https://doi.org/10.1093/gbe/evaf044
Articles
A Broad Genome Survey Reveals Widespread Presence of Secretoglobin Genes in Squamate and Archosaur Reptiles that Flowered into Diversity in Mammals
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf024, https://doi.org/10.1093/gbe/evaf024
Amino Acid Properties, Substitution Rates, and the Nearly Neutral Theory
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf025, https://doi.org/10.1093/gbe/evaf025
Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf026, https://doi.org/10.1093/gbe/evaf026
Pervasive Mitochondrial tRNA Gene Loss in Clade B of Haplosclerid Sponges (Porifera, Demospongiae)
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf020, https://doi.org/10.1093/gbe/evaf020
Multiple Domestication Centers of the Indian Pig Population
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf030, https://doi.org/10.1093/gbe/evaf030
Nanopore Sequencing of Amoebophrya Species Reveals Novel Collection of Bacteria Putatively Associated With Karlodinium veneficum
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf022, https://doi.org/10.1093/gbe/evaf022
Differential Gene Expression and Unbalanced Homeolog Expression Bias in 4 Million-Year-Old Allopolyploids of Nicotiana Section Repandae
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf029, https://doi.org/10.1093/gbe/evaf029
An Extensive Survey of Vertebrate-specific, Nonvisual Opsins Identifies a Novel Subfamily, Q113-Bistable Opsin
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf032, https://doi.org/10.1093/gbe/evaf032
The Breeding Sex Ratio Interacts With Demographic History to Shape Comparative Patterns of Variation on the X Chromosome and the Autosomes
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf035, https://doi.org/10.1093/gbe/evaf035
Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf011, https://doi.org/10.1093/gbe/evaf011
Pervasive Conservation of Intron Number and Other Genetic Elements Revealed by a Chromosome-level Genome Assembly of the Hyper-polymorphic Nematode Caenorhabditis brenneri
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf037, https://doi.org/10.1093/gbe/evaf037
A Short-Term View of Protein Sequence Evolution from Salmonella
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf040, https://doi.org/10.1093/gbe/evaf040
The Proteinase PAPP-A has Deep Evolutionary Roots Outside of the IGF System
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf042, https://doi.org/10.1093/gbe/evaf042
Genomic Architecture of the Clownfish Hybrid Amphiprion leucokranos
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf031, https://doi.org/10.1093/gbe/evaf031
Evolution of Plant Conserved microRNAs After Whole-Genome Duplications
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf045, https://doi.org/10.1093/gbe/evaf045
Tracing the Origin and Evolution of the Fungal Mycophenolic Acid Biosynthesis Pathway
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf039, https://doi.org/10.1093/gbe/evaf039
Genetic Origins of the Kiritimati Population from Central-Eastern Micronesia
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf046, https://doi.org/10.1093/gbe/evaf046
Inferring the Selective History of CNVs Using a Maximum Likelihood Model
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf050, https://doi.org/10.1093/gbe/evaf050
Analyses of Transposable Elements in Arbuscular Mycorrhizal Fungi Support Evolutionary Parallels With Filamentous Plant Pathogens
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf038, https://doi.org/10.1093/gbe/evaf038
Comparing Small and Large Genomes Within Monogonont Rotifers
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf041, https://doi.org/10.1093/gbe/evaf041
Genome-Wide Selection Scans in Mexican Indigenous Populations Reveal Recent Signatures of Pathogen and Diet Adaptation
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf043, https://doi.org/10.1093/gbe/evaf043
Genome Resources
Chromosome-Level Genome Assembly of the Heptageniid Mayfly Parafronurus youi (Ephemeroptera), and Its Annotation
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf027, https://doi.org/10.1093/gbe/evaf027
A Haplotype-resolved Chromosome-scale Genome Assembly and Annotation for the Leafcutter Ant, Acromyrmex octospinosus
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf047, https://doi.org/10.1093/gbe/evaf047
Corrections
Correction to: Chromosome-Level Genome Assembly and Annotation of Corallium rubrum: A Mediterranean Coral Threatened by Overharvesting and Climate Change
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf036, https://doi.org/10.1093/gbe/evaf036
Correction to: De Novo Genome Assembly Highlights the Role of Lineage-Specific Gene Duplications in the Evolution of Venom in Fea's Viper (Azemiops feae)
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf033, https://doi.org/10.1093/gbe/evaf033
