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Section: Gene Regulation, Chromatin and Epigenetics
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Journal Article

Nutrient starvation-induced Hda1C rewiring: coordinated regulation of transcription and translation

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Min Kyung Lee and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf256, https://doi.org/10.1093/nar/gkaf256
Published: 18 April 2025
Journal Article

Single-stranded DNA drives σ subunit loading onto mycobacterial RNA polymerase to unlock initiation-competent conformations

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Rishi Kishore Vishwakarma and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf272, https://doi.org/10.1093/nar/gkaf272
Published: 16 April 2025
Journal Article

Maternal histone mRNAs are uniquely processed through polyadenylation in a Stem-Loop Binding Protein (SLBP) dependent manner

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Juan Pérez-Roldán and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf288, https://doi.org/10.1093/nar/gkaf288
Published: 15 April 2025
Journal Article

Transcriptional induction by ecdysone in Drosophila salivary glands involves an increase in chromatin accessibility and acetylation

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Aleksandra A Evdokimova and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf284, https://doi.org/10.1093/nar/gkaf284
Published: 15 April 2025
Journal Article

Nuclear actin-dependent Meg3 expression suppresses metabolic genes by affecting the chromatin architecture at sites of elevated H3K27 acetylation levels

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Nadine Hosny El Said and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf280, https://doi.org/10.1093/nar/gkaf280
Published: 14 April 2025
Journal Article

The ZBTB24-CDCA7-HELLS axis suppresses the totipotent 2C-like reprogramming by maintaining Dux methylation and repression

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Dan Guo and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf302, https://doi.org/10.1093/nar/gkaf302
Published: 14 April 2025
Journal Article

A specific pluripotency-associated eRNA controls Nanog locus by shaping the epigenetic landscape and stabilizing enhancer–promoter interaction

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Mariella Cuomo and others
Nucleic Acids Research, Volume 53, Issue 7, 24 April 2025, gkaf274, https://doi.org/10.1093/nar/gkaf274
Published: 12 April 2025
Journal Article

Altering translation allows E. coli to overcome G-quadruplex stabilizers

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Rachel R Cueny and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf264, https://doi.org/10.1093/nar/gkaf264
Published: 07 April 2025
Journal Article

Two redox-responsive LysR-type transcription factors control the oxidative stress response of Agrobacterium tumefaciens

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Janka J Schmidt and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf267, https://doi.org/10.1093/nar/gkaf267
Published: 07 April 2025
Journal Article

RID is required for both repeat-induced point mutation and nucleation of a novel transitional heterochromatic state for euchromatic repeats

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Zhen He and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf263, https://doi.org/10.1093/nar/gkaf263
Published: 04 April 2025
Journal Article

Cooperation of a polymerizing SAM domain and an intrinsically disordered region enables full SAMD1 function on chromatin

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Merle Geller and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf259, https://doi.org/10.1093/nar/gkaf259
Published: 04 April 2025
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Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers

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Muhunden Jayakrishnan and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf202, https://doi.org/10.1093/nar/gkaf202
Published: 01 April 2025
Journal Article

Fungal chromatin remodeler Isw1 modulates translation via regulating tRNA transcription

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Jing Wang and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf225, https://doi.org/10.1093/nar/gkaf225
Published: 01 April 2025
Journal Article

Genomic regions occupied by both RARα and VDR are involved in the convergence and cooperation of retinoid and vitamin D signaling pathways

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Hamidreza Mianesaz and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf230, https://doi.org/10.1093/nar/gkaf230
Published: 01 April 2025
Journal Article

N4-acetylcytidine coordinates with NP1 and CPSF5 to facilitate alternative RNA processing during the replication of minute virus of canines

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Xueyan Zhang and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf229, https://doi.org/10.1093/nar/gkaf229
Published: 01 April 2025
Journal Article

PfGCN5 is essential for Plasmodium falciparum survival and transmission and regulates Pf H2B.Z acetylation and chromatin structure

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Jingyi Tang and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf218, https://doi.org/10.1093/nar/gkaf218
Published: 29 March 2025
Journal Article

A hidden intrinsic ability of bicistronic expression based on a novel translation reinitiation mechanism in yeast

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Yiwen Sun and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf220, https://doi.org/10.1093/nar/gkaf220
Published: 28 March 2025
Journal Article

DGCR8 haploinsufficiency leads to primate-specific RNA dysregulation and pluripotency defects

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Ana Colomer-Boronat and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf197, https://doi.org/10.1093/nar/gkaf197
Published: 26 March 2025
Journal Article

SMARCA4 regulates inducible BRD4 genomic redistribution coupling intrinsic immunity and plasticity in epithelial injury-repair

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Xiaofang Xu and Allan R Brasier
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf211, https://doi.org/10.1093/nar/gkaf211
Published: 25 March 2025
Journal Article

An evolutionarily conserved constellation of functional cis-elements programs the virus-responsive fate of the human (epi)genome

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Marianna A Koutsi and others
Nucleic Acids Research, Volume 53, Issue 6, 11 April 2025, gkaf207, https://doi.org/10.1093/nar/gkaf207
Published: 25 March 2025