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Section: Cancer Computational Biology
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Journal Article

Harnessing transcriptional regulation of alternative end-joining to predict cancer treatment

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Roderic Espín and others
NAR Cancer, Volume 7, Issue 1, March 2025, zcaf007, https://doi.org/10.1093/narcan/zcaf007
Published: 07 March 2025
Journal Article

Spatial transcriptomics in breast cancer reveals tumour microenvironment-driven drug responses and clonal therapeutic heterogeneity

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María José Jiménez-Santos and others
NAR Cancer, Volume 6, Issue 4, December 2024, zcae046, https://doi.org/10.1093/narcan/zcae046
Published: 18 December 2024
Journal Article

Integration of transcriptional and epigenetic regulation of TFEB reveals its dual functional roles in Pan-cancer

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Jing-Fang Luo and others
NAR Cancer, Volume 6, Issue 4, December 2024, zcae043, https://doi.org/10.1093/narcan/zcae043
Published: 15 November 2024
Journal Article

The three YTHDF paralogs and VIRMA are strong cross-histotype tumor driver candidates among m6A core genes

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Eliana Destefanis and others
NAR Cancer, Volume 6, Issue 4, December 2024, zcae040, https://doi.org/10.1093/narcan/zcae040
Published: 15 October 2024
Journal Article

CytoCellDB: a comprehensive resource for exploring extrachromosomal DNA in cancer cell lines

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Jacob Fessler and others
NAR Cancer, Volume 6, Issue 3, September 2024, zcae035, https://doi.org/10.1093/narcan/zcae035
Published: 01 August 2024
Journal Article

Neural-net-based cell deconvolution from DNA methylation reveals tumor microenvironment associated with cancer prognosis

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Yoshiaki Yasumizu and others
NAR Cancer, Volume 6, Issue 2, June 2024, zcae022, https://doi.org/10.1093/narcan/zcae022
Published: 15 May 2024
Journal Article

The DNA Damage Response (DDR) landscape of endometrial cancer defines discrete disease subtypes and reveals therapeutic opportunities

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Xingyuan Zhang and others
NAR Cancer, Volume 6, Issue 2, June 2024, zcae015, https://doi.org/10.1093/narcan/zcae015
Published: 08 April 2024
Journal Article

Singleton mutations in large-scale cancer genome studies: uncovering the tail of cancer genome

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Sanket Desai and others
NAR Cancer, Volume 6, Issue 1, March 2024, zcae010, https://doi.org/10.1093/narcan/zcae010
Published: 12 March 2024
Journal Article

A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes

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Yat-tsai Richie Wan and others
NAR Cancer, Volume 6, Issue 1, March 2024, zcae002, https://doi.org/10.1093/narcan/zcae002
Published: 29 January 2024
Journal Article

Gene essentiality in cancer is better predicted by mRNA abundance than by gene regulatory network-inferred activity

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Cosmin Tudose and others
NAR Cancer, Volume 5, Issue 4, December 2023, zcad056, https://doi.org/10.1093/narcan/zcad056
Published: 28 November 2023
Journal Article

The transcriptional landscape of endogenous retroelements delineates esophageal adenocarcinoma subtypes

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Anastasiya Kazachenka and others
NAR Cancer, Volume 5, Issue 3, September 2023, zcad040, https://doi.org/10.1093/narcan/zcad040
Published: 26 July 2023
Journal Article

Heterogeneity in the gene regulatory landscape of leiomyosarcoma

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Tatiana Belova and others
NAR Cancer, Volume 5, Issue 3, September 2023, zcad037, https://doi.org/10.1093/narcan/zcad037
Published: 24 July 2023
Journal Article

An integrated genomic approach identifies follistatin as a target of the p63-epidermal growth factor receptor oncogenic network in head and neck squamous cell carcinoma

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Akinsola Oyelakin and others
NAR Cancer, Volume 5, Issue 3, September 2023, zcad038, https://doi.org/10.1093/narcan/zcad038
Published: 24 July 2023
Journal Article

Dysfunction of ubiquitin protein ligase MYCBP2 leads to cell resilience in human breast cancers

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Ryan A Neff and others
NAR Cancer, Volume 5, Issue 3, September 2023, zcad036, https://doi.org/10.1093/narcan/zcad036
Published: 10 July 2023
Journal Article

Systemic structural analysis of alterations reveals a common structural basis of driver mutations in cancer

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Tomer Meirson and others
NAR Cancer, Volume 5, Issue 1, March 2023, zcac040, https://doi.org/10.1093/narcan/zcac040
Published: 18 January 2023
Journal Article

A convergent malignant phenotype in B-cell acute lymphoblastic leukemia involving the splicing factor SRRM1

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Adria Closa and others
NAR Cancer, Volume 4, Issue 4, December 2022, zcac041, https://doi.org/10.1093/narcan/zcac041
Published: 09 December 2022
Journal Article

Pancancer transcriptomic profiling identifies key PANoptosis markers as therapeutic targets for oncology

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Raghvendra Mall and others
NAR Cancer, Volume 4, Issue 4, December 2022, zcac033, https://doi.org/10.1093/narcan/zcac033
Published: 01 November 2022
Journal Article

The limits of molecular signatures for pancreatic ductal adenocarcinoma subtyping

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Manuela Lautizi and others
NAR Cancer, Volume 4, Issue 4, December 2022, zcac030, https://doi.org/10.1093/narcan/zcac030
Published: 17 October 2022
Journal Article
EDITOR'S CHOICE

KMT2C-deficient tumors have elevated APOBEC mutagenesis and genomic instability in multiple cancers

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Xiaoju Hu and others
NAR Cancer, Volume 4, Issue 3, September 2022, zcac023, https://doi.org/10.1093/narcan/zcac023
Published: 25 July 2022
Journal Article
EDITOR'S CHOICE

Luminal androgen receptor breast cancer subtype and investigation of the microenvironment and neoadjuvant chemotherapy response

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Kevin J Thompson and others
NAR Cancer, Volume 4, Issue 2, June 2022, zcac018, https://doi.org/10.1093/narcan/zcac018
Published: 17 June 2022