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Tetyana Kobets, Michael J Iatropoulos, Jiandong D Duan, Klaus D Brunnemann, Dumitru A Iacobas, Sanda Iacobas, Esther Vock, Ulrich Deschl, Gary M Williams, Expression of Genes Encoding for Xenobiotic Metabolism After Exposure to Dialkylnitrosamines in the Chicken Egg Genotoxicity Alternative Model, Toxicological Sciences, Volume 166, Issue 1, November 2018, Pages 82–96, https://doi.org/10.1093/toxsci/kfy197
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Abstract
The Chicken Egg Genotoxicity Assay (CEGA) demonstrated responsiveness to various DNA-reactive chemicals requiring metabolic activation, which implies broad bioactivation capability. To assess potential metabolic competence, expression profiles of metabolic genes in the embryo-chicken fetal liver were determined using microarray technology. Fertilized chicken eggs were injected under the CEGA protocol with vehicle (deionized water [DW]), the activation-dependent carcinogens, diethylnitrosamine (DEN), and N-nitrosodiethanolamine (NDELA) at doses producing no effect on survival. Previously in CEGA, DEN produced DNA damage, whereas NDELA did not. Expressions of 463 genes known to encode for phase I and II of endo- and xenobiotic metabolism were detected on the array. DW did not affect the expression of the selected genes, deregulating less than 1% of them. In contrast, DEN at 2 mg/egg and NDELA at 4 mg/egg produced significant transcriptomic alterations, up-regulating up to 41% and down-regulating over 31% of studied genes. Both nitrosamines modulated the majority of the genes in a similar manner, sharing 64 up-regulated and 93 down-regulated genes with respect to control group, indicating similarity in the regulation of their metabolism by avian liver. Differences in gene expression between DEN and NDELA were documented for several phase I CYP 450 genes that are responsible for nitrosamine biotransformation, as well as for phase II genes that regulate detoxication reactions. These findings could underlie the difference in genotoxicity of DEN and NDELA in CEGA. In conclusion, the analysis of gene expression profiles in embryo-chicken fetal liver dosed with dialkylnitrosamines demonstrated that avian species possess a complex array of inducible genes coding for biotransformation.
The Chicken Egg Genotoxicity Assay
The Chicken Egg Genotoxicity Assay (CEGA) and the related Turkey Egg Genotoxicity Assay (TEGA) are novel alternatives to animal models, which have been used for the screening of genotoxic potential of a variety of chemicals (Iatropoulos et al., 2017; Kobets et al., 2016,, 2018; Williams et al., 2011a, 2014). TEGA and CEGA were developed as potential follow-up assays to the existing regulatory in vitro assays in an effort to minimize the use of rodent assays. Among important aspects of the in ovo model is the utilization of an intact organism that is not considered to be a live animal in compliance with Animals (Scientific Procedures) Act 1986, since the termination in CEGA occurs 10–11 days before hatching. Additionally, the nervous system of the avian embryo is not finally formed by the termination time point (Hughes, 1953), so potential discomfort to the organism during the procedure and termination does not occur. Thus, CEGA provides a useful replacement for in vivo genotoxicity assessment where the use of animals is undesirable or precluded. Rigorous CEGA protocol precludes many artifacts, including influences of numerous environmental factors, which is difficult to accomplish in other mature experimental animals.
Currently, CEGA is the only nonanimal model that allows for an extensive evaluation of multiple critical endpoints in the avian fetal liver indicative of potential genotoxicity, namely the comet assay for detection of DNA strand breaks (Ostling and Johanson, 1984; Singh et al., 1988; Tice et al., 2000), and the nucleotide 32P-postlabeling assay for DNA adducts detection (Phillips and Arlt, 2014; Randerath et al., 1981). Also, the model allows assessment of other critical endpoints, including biotransformation activities (Perrone et al., 2004), cell proliferation (unpublished), histopathologic evaluation (Iatropoulos et al., 2017), and as reported here, transcriptomic analysis.
The genotoxic effects of chemicals in CEGA and TEGA are similar to those in vivo (Iatropoulos et al., 2017; Kobets et al., 2016, 2018; Williams et al., 2011a, 2014), which reflects the fact that the development and histopathological structure of the avian liver resembles that of rodents and humans (Golbar et al., 2012; Iatropoulos et al., 2017; Ross and Pawlina, 2006; Yokouchi, 2005). Moreover, avian fetal liver in early stages of development is involved in all of the metabolic processes required to sustain the developing autonomous organism (Lorr and Bloom, 1987; Sinclair and Sinclair, 1993). Thus, avian fetal liver expresses major phase I and phase II biotransformation enzymes (Hamilton et al., 1983; Ignarro and Shideman, 1968; Jackson et al., 1986; Perrone et al., 2004; Rifkind et al., 1979,, 1994; Sinclair and Sinclair, 1993; Wolf and Luepke, 1997), activity of which is comparable to that in postnatal rodents (Perrone et al., 2004). These enzymes often play a major role in bioactivation of genotoxic chemical carcinogens, thereby making CEGA and TEGA attractive models for detecting effects of activation-dependent carcinogens without using an exogenous source of enzymes. Moreover, mimicking in vivo models, the avian embryo-fetus is capable of detoxication and elimination of xenobiotics, in contrast to in vitro systems (Perrone et al., 2004; Romanoff, 1960; Wolf and Luepke, 1997).
Additionally, CEGA is the first alternative genotoxicity model, which also allows analysis of tissue-specific gene expression, since it utilizes the liver of an intact organism as opposed to in vitro methods. A highly specific and sensitive, validated high-throughput microarray platform, allows the study of chicken functional genomics (Li et al., 2008). Similar to other vertebrates, approximately 35 000 distinct transcripts were identified in chicken, almost 40% of which have orthologs in other organisms (Boardman et al., 2002). Moreover, published literature provides proof of the positive correlation between gene expression patterns in chicken and other vertebrates (Nie et al., 2010), providing additional evidence that avian species can be utilized along with rodent models. While the presence of liver-specific endo- and xenobiotic-related genes has been previously described in chicken (Li et al., 2009), the modulation of their expression in response to xenobiotic exposure has not been investigated in detail.
Accordingly, in the current study, gene expression data from chicken fetal liver were analyzed for the presence and expression of genes that code for enzymes involved in the metabolism of endo- and xenobiotics. Gene activity was assessed following repeat administration under CEGA conditions of two activation-dependent carcinogenic N-nitrosamines, diethylnitrosamine (DEN), and N-nitrosodiethanolamine (NDELA), compared with the control group injected with vehicle (DW). Data were also obtained on other genes present on the platform, but the current report focuses only on the findings for the expression of metabolic genes in order to support the proficiency of avian embryo-fetal liver in chemical biotransformation.
N-Nitrosamines
Nitrosamines have been extensively evaluated in various animal species, revealing that the majority of compounds from this group produced sufficient evidence for carcinogenicity in laboratory animals. Both, DEN and NDELA in experimental animals induce tumors in multiple sites, including liver (IARC, 1978, 2000; Lijinsky, 1987).
These nitrosamines were previously evaluated in CEGA for their genotoxic potential, revealing that DEN produced DNA damage, whereas NDELA did not (Williams et al., 2014). Similar results were obtained in another in ovo model, hen’s egg micronucleus assay, which assesses mutagenic properties of chemical agents (Wolf et al., 2003). Phenotypic changes produced by these chemicals in the chicken fetal liver were congruent with the molecular alterations observed in CEGA (Iatropoulos et al., 2017). Specifically, DEN produced dose-related distortion of liver architecture, whereas livers in a group dosed with NDELA resembled those in control groups. In addition, only DEN produced agenesis of the gallbladder in chicken and turkey fetuses (Iatropoulos et al., 2017; Williams et al. 2011b). In rodents, the teratogenic potential of DEN has not been reported, which was attributed to lack of activating enzymes in the fetus (Arcos et al., 1982; IARC, 1978). Table 1 summarizes previous findings of testing DEN and NDELA in CEGA.
Previous Findings of Diethylnitrosamine (DEN) and N-Nitrosodiethanolamine (NDELA) Testing in CEGA
| Compound . | Dose Tested*, mg/egg . | Assay . | Results . | References . |
|---|---|---|---|---|
| DEN | 0.125–4 | Comet | + | Williams et al. (2014) |
| 0.125–4 | NPL | − | Williams et al. (2014) | |
| 1–2 | Histopathological evaluation | DEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasia | Iatropoulos et al. (2017) | |
| NDELA | 0.5–4 | Comet | − | Williams et al. (2014) |
| 0.5–4 | NPL | − | Williams et al. (2014) | |
| 4 | Histopathological evaluation | In groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control group | Iatropoulos et al. (2017) |
| Compound . | Dose Tested*, mg/egg . | Assay . | Results . | References . |
|---|---|---|---|---|
| DEN | 0.125–4 | Comet | + | Williams et al. (2014) |
| 0.125–4 | NPL | − | Williams et al. (2014) | |
| 1–2 | Histopathological evaluation | DEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasia | Iatropoulos et al. (2017) | |
| NDELA | 0.5–4 | Comet | − | Williams et al. (2014) |
| 0.5–4 | NPL | − | Williams et al. (2014) | |
| 4 | Histopathological evaluation | In groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control group | Iatropoulos et al. (2017) |
+, positive; –, negative. *, administered in 3 daily doses on days 9, 10, and 11, with termination on days 11 (comet and NPL) or 12 and 18 (histopathological evaluation). NPL, 32P-nucleotide postlabeling assay.
Previous Findings of Diethylnitrosamine (DEN) and N-Nitrosodiethanolamine (NDELA) Testing in CEGA
| Compound . | Dose Tested*, mg/egg . | Assay . | Results . | References . |
|---|---|---|---|---|
| DEN | 0.125–4 | Comet | + | Williams et al. (2014) |
| 0.125–4 | NPL | − | Williams et al. (2014) | |
| 1–2 | Histopathological evaluation | DEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasia | Iatropoulos et al. (2017) | |
| NDELA | 0.5–4 | Comet | − | Williams et al. (2014) |
| 0.5–4 | NPL | − | Williams et al. (2014) | |
| 4 | Histopathological evaluation | In groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control group | Iatropoulos et al. (2017) |
| Compound . | Dose Tested*, mg/egg . | Assay . | Results . | References . |
|---|---|---|---|---|
| DEN | 0.125–4 | Comet | + | Williams et al. (2014) |
| 0.125–4 | NPL | − | Williams et al. (2014) | |
| 1–2 | Histopathological evaluation | DEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasia | Iatropoulos et al. (2017) | |
| NDELA | 0.5–4 | Comet | − | Williams et al. (2014) |
| 0.5–4 | NPL | − | Williams et al. (2014) | |
| 4 | Histopathological evaluation | In groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control group | Iatropoulos et al. (2017) |
+, positive; –, negative. *, administered in 3 daily doses on days 9, 10, and 11, with termination on days 11 (comet and NPL) or 12 and 18 (histopathological evaluation). NPL, 32P-nucleotide postlabeling assay.
Genotoxicity and carcinogenicity of nitrosamines is attributed to their metabolic conversion to form alkylating agents (Lijinsky, 1987). These active metabolites then react with macromolecules, such as RNA and DNA, producing adducts at various sites, eg, O6 of guanine, O2 and O4 of thymidine and uridine, and N6 of adenosine (Loveless, 1969; Magee, 1971; Swann and Magee, 1968). While DEN, as is the case for most genotoxic nitrosamines, is activated by cytochrome P450-mediated α-hydroxylation of the carbon adjacent to the nitrosamino group, the major metabolic route for NDELA is β-oxidation mediated by alcohol dehydrogenase (ALD) (Figure 1) (Bonfanti et al., 1987; Loeppky, 1999). This difference in metabolic routes can contribute to differences in genotoxic potential of DEN and NDELA (Lijinsky, 1987). Some studies also suggest that sulfation can play a role in activation of NDELA (Sterzel and Eisenbrand, 1986). Denitrosation, which also is mediated by cytochromes, is considered to be a detoxication pathway for nitrosamines, which competes with activation pathways (Hecht, 1997). The major elimination of the nitrosamines occurs in urine either unchanged or conjugated with glucuronide or sulfate (IARC, 1978,, 2000).
Metabolic conversion of diethylnitrosamine (DEN) and N-nitrosodiethanolamine (NDELA). ADH, alcohol dehydrogenase; CYP, cytochrome P450; NAD, nicotinamide-adenine dinucleotide; NADPH, nicotinamide-adenine dinucleotide phosphate (reduced form).
MATERIALS AND METHODS
Tested chemicals
The chemical structures of the tested compounds are shown in Figure 1. DEN (CAS: 55-18-5; ≥99% pure as reported by the supplier) and NDELA (CAS: 1116-54-7; ≥90%) were purchased from Sigma-Aldrich (St. Louis, Missouri). Deionized water (DW) prepared with a Picopure System (Hydro Services and Supplies, Garfield, New Jersey), which has an online resistance (10 MOhm) monitor, was used as a vehicle for both chemicals.
Experimental design
Fertilized specific pathogen-free premium white leghorn chicken (Gallus gallus) eggs of undetermined sex were purchased from Charles River (North Franklin, Connecticut). Upon arrival, eggs were numbered, weighed, and randomly divided into control and dosed groups (at least 10 eggs per group). The first day of incubation was designated as Day 0. Eggs were incubated in GQF Manufacturing Company Hova Bator Model 2362N styrofoam incubators (Murray McMurray Hatchery, Webster City, Iowa) with automatic egg turners at 37 ± 0.5°C and 60 ± 5% humidity. Viability was assessed on day 8 by transillumination, eggs that did not develop were eliminated. Control and dosed eggs were separated to avoid cross contamination. Doses of compounds were selected based on the previous findings in CEGA (Williams et al., 2014). The dose selected was the dose that produced genotoxic and morphologic effects but/or did not produce a decrease in viability levels higher than 50% (at least 50% of fetuses in the group are viable upon opening eggs at termination), in order to avoid false positive results due to cytotoxicity. Vehicle (DW) as well as tested compounds, DEN at 2 mg/egg and NDELA at 4 mg/egg, were administered in total volume of 0.15 ml/egg via 3 daily injections into the air sac on days 9 through 11 of incubation. An additional group, environmental control, did not receive any injections. Chicken fetuses were terminated 3 h after the last injection by decapitation. Fetal weights were recorded. Livers were removed and weighed, and frozen at −80°C for subsequent gene expression analysis.
RNA extraction
Total RNA was extracted from chicken fetal liver (n = 4 liver samples per group per compound) using RNeasy Mini kit (Qiagen, Valencia, California) according to the manufacturer’s protocol. The concentration of samples was determined by NanoDrop ND-2000 Spectrophotometer (NanoDrop Technologies, Wilmington, Delaware). The quality of total RNA was assessed on Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, California), and RNA integrity number (RIN) was established to be on average 9.6, ranging from 10 to 8.7 for each sample.
Microarray
About 825 ng of RNA (with RIN > 9.10) was reverse transcribed and labeled with fluorescent tags Cy3/Cy5 dUTP using Low Input Quick Amp Labeling Kit (Agilent Technologies). Microarray processing was performed in 4 biological replicas (4 samples [replicas] per group) as detailed in a previously published protocol (Velíšková et al., 2015) using Agilent 60 whole genome 4X44 chicken V2 microarray platform (Agilent Technologies). The hybridized slides were scanned with an Agilent Dual Laser Scanner G2539A (Agilent Technologies). The resulting images were analyzed using Agilent Feature Extraction 11.1 software. The raw intensity values were normalized using previously published algorithms (Lee et al., 2017).
Gene expression data complying with the “Minimum Information about Microarray Experiments” (MIAME) have been made available in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database (http://www.ncbi.nlm.nih.gov/geo) as series GSE110904 and GSE110906.
Statistical and bioinformatic analysis of microarray data
The Pearson product-moment correlation coefficient was computed between the fold changes of genes in eggs dosed with DEN and NDELA with respect to eggs dosed with vehicle only.
Manual search, Database for Annotation, Visualization and Integrated Discovery (DAVID), the Kyoto Encyclopedia of Genes and Genomes (KEGG), and Ingenuity Pathway Analysis (IPA) software were used for functional annotation, gene ontology analysis, and visualization of data. The “core analysis” function in the IPA software was used to categorize and visualize biological functions and gene networks. For each molecular pathway, p-value was calculated on the basis of a right-tailed Fisher exact test. This test measures an overlap between genes significantly expressed in the experiment and predicted regulated gene set in a particular pathway (Krämer et al., 2014). Pathways with p-value <.05 were considered significant.
RESULTS
The viability of embryo-fetuses in control and dosed groups was 100%, indicating absence of toxicity.
Out of 26 145 genes present on the array, 463 genes were selected (manually and using IPA and KEGG software) for analysis based on their role in endo- and xenobiotic biotransformation. Expression of those genes in the vehicle control group (DW) were similar to that in the environmental control group, less than 1% of genes involved in encoding of xenobiotic biotrasformation enzymes were deregulated in DW group. In contrast, DEN at 2 mg/egg and NDELA, at 4 mg/egg produced significant changes in gene expression patterns. As illustrated in Figure 2, most xenobiotic genes were expressed in a similar manner in groups dosed with DEN and NDELA. The similarity (SIM) index of the two groups (see Materials and Methods section) was 90.23% (Figure 2). The correlation between replicas was 0.979, indicating high consistency and high experimental quality. DEN up-regulated 66 and down-regulated 95 of metabolic genes, and NDELA up-regulated 75 and down-regulated 100 genes involved in regulation of chemical metabolism. Both compounds shared 64 up-regulated and 93 down-regulated genes.
Microarray analysis of gene expression in the chicken fetal livers dosed with diethylnitrosamine (DEN) and N-nitrosodiethanolamine (NDELA) with respect to control group dosed with DW. Fold change (negative for down-regulation) of xenobiotic genes in DEN dosed eggs plotted against fold changes in NDELA dosed eggs. Note that most genes fall close to the diagonal (red line) of the equal regulation by the 2 compounds. Gene symbols are shown where space allowed.
IPA functional annotation of significantly deregulated metabolic genes, revealed significant (p = 6.92E-21) enrichment of metabolism signaling molecular pathway by either DEN or NDELA exposure (Figure 3, Supplementary Table 1). Analysis also revealed significant enrichment of cytochrome P450 panel in humans, rat, and mouse (Figure 3), indicating similarities between xenobiotic-related genes expressed in chicken fetuses compared with other species. When comparing DEN and NDELA gene expression profiles, DEN more significantly affected oxidative stress and CAR/RXR activation pathways (p = 9.83E-05 and 9.72E-0.4, respectively) (Figure 3, Supplementary Table 1), which are known to be altered during carcinogenesis.
Most significantly impacted pathways in chicken fetal livers exposed to diethylnitrosamine (DEN) (A) and N-nitrosodiethanolamine (NDELA) (B). IPA software was used to analyze and visualize pathway enrichment based on the uploaded gene list of significantly deregulated metabolic genes. See Supplementary Table 1 for details.
Tables 2 and 3 present the list of genes which encode phase I and II metabolic enzymes that were significantly modulated by DEN and NDELA. As evident from the tables, chicken fetal liver possesses a wide range of genes involved in xenobiotic transformation. Overall, exposure to DEN and NDELA in chicken fetal livers appeared to affect a higher number of genes regulating phase I xenobiotic metabolism, compared with that of phase II genes. The major difference in gene expression profiles of DEN and NDELA were the expression of cytochrome genes in phase I (Table 2) and genes responsible for glucuronidation in phase II (Table 3). Specifically, for phase I metabolic cytochrome genes responsible for oxidation, CYB5D2, CYP1A5, and CYP2AB4, were up-regulated by NDELA, while DEN did not significantly alter their expression. Additionally, NADPH oxidase gene, NOX4, was up-regulated by NDELA only, while abhydrolase gene, ABHD2, was up-regulated by DEN only. Over 60% of cytochrome genes detected in chicken livers belonged to either A or B subfamily. DEN and NDELA inhibited more than half of the genes involved in the processes of reduction (68%) and hydrolysis (up to 57%) (Table 2).
List of Genes Regulating Phase I Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/egg of N-Nitrosodiethanolamine (NDELA)
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Oxidation | |||
| CYTB | Cytochrome b | −510.40 | −493.15 |
| CYB5A | Cytochrome b5 type A (microsomal) | −353.72 | −294.36 |
| CYB5R2 | Cytochrome b5 reductase 2 | −82.85 | −69.29 |
| CYP2D6 | Cytochrome P450, family 2, subfamily D, polypeptide 6 | −49.43 | −45.67 |
| CYCS | Cytochrome c, somatic | −48.33 | −32.25 |
| CYB5B | Cytochrome b5 outer mitochondrial membrane | −43.95 | −36.53 |
| CYP27A1 | Cytochrome P450, family 27, subfamily A, polypeptide 1 | −39.58 | −25.79 |
| CYP2C18 | Cytochrome P450, family 2, subfamily C, polypeptide 18 | −14.98 | −11.50 |
| CYP2AC1 | Cytochrome P450, family 2, subfamily AC, polypeptide 1 | −14.56 | −15.81 |
| CYP1A1 | Cytochrome P450, family 1, subfamily A, polypeptide 1 | −11.74 | −10.22 |
| CYP3A7 | Cytochrome P450 A 37 | −11.09 | −10.12 |
| CYP1A4 | Cytochrome P450 1A4 | −3.96 | −5.55 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 22 | −3.91 | −3.50 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 2 | −3.87 | −5.71 |
| CYB5R4 | Cytochrome b5 reductase 4 | −3.00 | −2.67 |
| CYP2U1 | Cytochrome P450 family 2 subfamily U member 1 | −1.66 | −1.34 |
| CYB5D2 | Cytochrome b5 domain containing 2 | −1.48 | −2.41 |
| POR | Cytochrome P450 oxidoreductase | 1.67 | 1.61 |
| CYP2J22 | Cytochrome P450, family 2, subfamily J, polypeptide 22 | 1.70 | 1.69 |
| CYP1A5 | Cytochrome P450 | 2.05 | 2.79 |
| CYP20A1 | Cytochrome P450, family 20, subfamily A, polypeptide 1 | 3.68 | 2.87 |
| CYP2W1 | Cytochrome P450 family 2 subfamily W member 1 | 3.88 | 4.79 |
| CYP2AB4 | Cytochrome P450, family 2, subfamily AB, polypeptide 4 | 4.24 | 4.12 |
| CYP17A1 | Cytochrome P450, family 17, subfamily A, polypeptide 1 | 4.98 | 4.08 |
| CYBASC3 | Cytochrome b, ascorbate dependent 3 | 5.51 | 3.95 |
| CYP2C23A | Cytochrome P450, family 2, subfamily C, polypeptide 23a | 12.92 | 11.32 |
| CYP7B1 | Cytochrome P450, family 7, subfamily B, polypeptide 1 | 18.63 | 14.31 |
| CYP1B1 | Cytochrome P450 family 1 subfamily B member 1 | 27.35 | 22.37 |
| CYP21A2 | Cytochrome P450, family 21, subfamily A, polypeptide 2 | 55.93 | 52.22 |
| CYBRD1 | Cytochrome b reductase 1 | 56.57 | 57.05 |
| CYP27C1 | Cytochrome P450, family 27, subfamily C, polypeptide 1 | 181.57 | 171.64 |
| CYP2J24P | Cytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene | 875.17 | 684.93 |
| 1.1. Non-microsomal oxidation | |||
| ALDH9A1 | aldehyde dehydrogenase 9 family member A1 | −275.97 | −277.75 |
| ALDH4A1 | Aldehyde dehydrogenase 4 family, member A1 | −234.74 | −181.99 |
| ADH1C | Alcohol dehydrogenase 1C (class I), gamma polypeptide | −169.11 | −142.19 |
| ADH5 | Alcohol dehydrogenase 5 (class III), chi polypeptide | −155.12 | −139.00 |
| ALDH3A2 | Aldehyde dehydrogenase 3 family, member A2 | −73.81 | −69.88 |
| ALDH1A1 | Aldehyde dehydrogenase 1 family, member A1 | −13.82 | −14.69 |
| ADH6 | Alcohol dehydrogenase 6 (class V) | −9.13 | −9.36 |
| ALDH8A1 | Aldehyde dehydrogenase 8 family, member A1 | −5.61 | −5.55 |
| ALDH1A2 | Aldehyde dehydrogenase 1 family, member A2 | 2.54 | 2.72 |
| MAOB | Monoamine oxidase B | 13.02 | 12.42 |
| ALDH3B1 | Aldehyde dehydrogenase | 20.23 | 18.20 |
| ALDH1A3 | Aldehyde dehydrogenase 1 family, member A3 | 43.74 | 32.59 |
| AOX1 | Aldehyde oxidase 1 | 408.11 | 406.60 |
| 2. Reduction | |||
| NDUFS7 | NADH dehydrogenase (ubiquinone) Fe-S protein 7 | −982.96 | −588.23 |
| DHRS7 | Dehydrogenase/reductase (SDR family) member 7 | −973.54 | −914.21 |
| NDUFC2 | NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 | −401.02 | −387.56 |
| NDUFB6 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 | −364.17 | −260.10 |
| NDUFA8 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 | −333.71 | −304.55 |
| NDUFA4 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 | −239.45 | −231.93 |
| NDUFB10 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 | −218.17 | −297.59 |
| NDUFB3 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 | −197.45 | −146.09 |
| NDUFAB1 | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 | −176.69 | −196.89 |
| NDUFA1 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 | −127.18 | −90.95 |
| NDUFS5 | NADH dehydrogenase (ubiquinone) Fe-S protein 5 | −58.90 | −55.42 |
| NDUFB9 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 | −57.96 | −48.39 |
| AKR1B1L | Aldo-keto reductase family 1 member B1-like | −24.11 | −19.85 |
| DHRS13 | Dehydrogenase/reductase (SDR family) member 13 | −22.58 | −16.75 |
| NQO1 | NAD(P)H dehydrogenase, quinone 1 | −21.30 | −17.48 |
| DHRS7B | Dehydrogenase/reductase (SDR family) member 7B | −17.16 | −14.88 |
| NDUFB1 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 | −16.49 | −18.97 |
| C2ORF56 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 | −16.30 | −11.68 |
| NDUFA9 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 | −14.33 | −22.15 |
| NDUFS3 | NADH dehydrogenase (ubiquinone) Fe-S protein 3 | −12.14 | −13.95 |
| NDUFS8 | NADH dehydrogenase (ubiquinone) Fe-S protein 8 | −11.19 | −13.53 |
| NDUFB8 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 | −10.82 | −8.97 |
| NDUFA5 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 | −7.04 | −8.13 |
| AKR1B1L | Aldo-keto reductase family 1, member B1-like (aldose reductase) | −6.67 | −7.04 |
| NDUFA2 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 | −4.97 | −4.81 |
| NDUFA10 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 | −3.92 | −3.44 |
| NDUFV1 | NADH dehydrogenase (ubiquinone) flavoprotein 1 | −2.90 | −2.41 |
| AKR1B10L1 | Aldo-keto reductase family 1 member B10-like 1 | −2.85 | −3.28 |
| NQO2 | NAD(P)H dehydrogenase, quinone 2 | −2.37 | −2.55 |
| DHRS4 | Dehydrogenase/reductase (SDR family) member 4 | −2.37 | −2.13 |
| NOX4 | NADPH oxidase 4 (NOX4) | 2.12 | 2.53 |
| NSDHL | NAD(P)-dependent steroid dehydrogenase-like | 2.62 | 2.36 |
| AKR1A1 | Aldo-keto reductase family 1, member A1 (aldehyde reductase) | 3.41 | 2.86 |
| NDUFS1 | NADH dehydrogenase (ubiquinone) Fe-S protein 1 | 6.22 | 5.07 |
| NDUFAF1 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 | 7.14 | 7.26 |
| DHRS12 | Dehydrogenase/reductase (SDR family) member 12 | 7.27 | 7.92 |
| DHRS11 | Dehydrogenase/reductase (SDR family) member 11 | 8.59 | 5.37 |
| NDUFV3 | NADH dehydrogenase (ubiquinone) flavoprotein 3 | 12.19 | 11.68 |
| NDUFV2 | NADH dehydrogenase (ubiquinone) flavoprotein 2 | 19.40 | 15.46 |
| AKR1B10 | Aldo-keto reductase family 1, member B10 (aldose reductase) | 27.17 | 31.24 |
| NDUFAF4 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 | 44.84 | 46.20 |
| DHRS3 | Dehydrogenase/reductase (SDR family) member 3 | 79.64 | 80.15 |
| NDUFAF2 | NADH: ubiquinone oxidoreductase complex assembly factor 2 | 81.60 | 70.59 |
| NDUFB2 | NADH: ubiquinone oxidoreductase subunit B2 | 144.81 | 129.12 |
| 3. Hydrolysis | |||
| TC382723 | Gallus, complete | −39.13 | −45.18 |
| EPHX1L | Epoxide hydrolase 1-like | −27.91 | −22.21 |
| ABHD13 | Abhydrolase domain containing 13 | −24.36 | −25.14 |
| ABHD5 | Abhydrolase domain containing 5 | −6.42 | −6.43 |
| ABHD11 | Abhydrolase domain containing 11 | N/A | −7.48 |
| ALPL | Alkaline phosphatase, liver/bone/kidney | −4.38 | −4.37 |
| ABHD3 | Abhydrolase domain containing 3 | N/A | −2.23 |
| EPHX2 | Epoxide hydrolase 2, cytoplasmic | −1.57 | −1.56 |
| ABHD2 | Abhydrolase domain containing 2 | 1.42 | 1.18 |
| ABHD17B | Family with sequence similarity 108, member B1 | 1.74 | 1.53 |
| ALPP | Alkaline phosphatase | 2.85 | 2.35 |
| ABHD6 | Abhydrolase domain containing 6 | 35.28 | 35.76 |
| ABHD10 | Abhydrolase domain containing 10 | 37.78 | 32.21 |
| ABHD12 | Abhydrolase domain containing 12 | 84.66 | 99.15 |
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Oxidation | |||
| CYTB | Cytochrome b | −510.40 | −493.15 |
| CYB5A | Cytochrome b5 type A (microsomal) | −353.72 | −294.36 |
| CYB5R2 | Cytochrome b5 reductase 2 | −82.85 | −69.29 |
| CYP2D6 | Cytochrome P450, family 2, subfamily D, polypeptide 6 | −49.43 | −45.67 |
| CYCS | Cytochrome c, somatic | −48.33 | −32.25 |
| CYB5B | Cytochrome b5 outer mitochondrial membrane | −43.95 | −36.53 |
| CYP27A1 | Cytochrome P450, family 27, subfamily A, polypeptide 1 | −39.58 | −25.79 |
| CYP2C18 | Cytochrome P450, family 2, subfamily C, polypeptide 18 | −14.98 | −11.50 |
| CYP2AC1 | Cytochrome P450, family 2, subfamily AC, polypeptide 1 | −14.56 | −15.81 |
| CYP1A1 | Cytochrome P450, family 1, subfamily A, polypeptide 1 | −11.74 | −10.22 |
| CYP3A7 | Cytochrome P450 A 37 | −11.09 | −10.12 |
| CYP1A4 | Cytochrome P450 1A4 | −3.96 | −5.55 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 22 | −3.91 | −3.50 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 2 | −3.87 | −5.71 |
| CYB5R4 | Cytochrome b5 reductase 4 | −3.00 | −2.67 |
| CYP2U1 | Cytochrome P450 family 2 subfamily U member 1 | −1.66 | −1.34 |
| CYB5D2 | Cytochrome b5 domain containing 2 | −1.48 | −2.41 |
| POR | Cytochrome P450 oxidoreductase | 1.67 | 1.61 |
| CYP2J22 | Cytochrome P450, family 2, subfamily J, polypeptide 22 | 1.70 | 1.69 |
| CYP1A5 | Cytochrome P450 | 2.05 | 2.79 |
| CYP20A1 | Cytochrome P450, family 20, subfamily A, polypeptide 1 | 3.68 | 2.87 |
| CYP2W1 | Cytochrome P450 family 2 subfamily W member 1 | 3.88 | 4.79 |
| CYP2AB4 | Cytochrome P450, family 2, subfamily AB, polypeptide 4 | 4.24 | 4.12 |
| CYP17A1 | Cytochrome P450, family 17, subfamily A, polypeptide 1 | 4.98 | 4.08 |
| CYBASC3 | Cytochrome b, ascorbate dependent 3 | 5.51 | 3.95 |
| CYP2C23A | Cytochrome P450, family 2, subfamily C, polypeptide 23a | 12.92 | 11.32 |
| CYP7B1 | Cytochrome P450, family 7, subfamily B, polypeptide 1 | 18.63 | 14.31 |
| CYP1B1 | Cytochrome P450 family 1 subfamily B member 1 | 27.35 | 22.37 |
| CYP21A2 | Cytochrome P450, family 21, subfamily A, polypeptide 2 | 55.93 | 52.22 |
| CYBRD1 | Cytochrome b reductase 1 | 56.57 | 57.05 |
| CYP27C1 | Cytochrome P450, family 27, subfamily C, polypeptide 1 | 181.57 | 171.64 |
| CYP2J24P | Cytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene | 875.17 | 684.93 |
| 1.1. Non-microsomal oxidation | |||
| ALDH9A1 | aldehyde dehydrogenase 9 family member A1 | −275.97 | −277.75 |
| ALDH4A1 | Aldehyde dehydrogenase 4 family, member A1 | −234.74 | −181.99 |
| ADH1C | Alcohol dehydrogenase 1C (class I), gamma polypeptide | −169.11 | −142.19 |
| ADH5 | Alcohol dehydrogenase 5 (class III), chi polypeptide | −155.12 | −139.00 |
| ALDH3A2 | Aldehyde dehydrogenase 3 family, member A2 | −73.81 | −69.88 |
| ALDH1A1 | Aldehyde dehydrogenase 1 family, member A1 | −13.82 | −14.69 |
| ADH6 | Alcohol dehydrogenase 6 (class V) | −9.13 | −9.36 |
| ALDH8A1 | Aldehyde dehydrogenase 8 family, member A1 | −5.61 | −5.55 |
| ALDH1A2 | Aldehyde dehydrogenase 1 family, member A2 | 2.54 | 2.72 |
| MAOB | Monoamine oxidase B | 13.02 | 12.42 |
| ALDH3B1 | Aldehyde dehydrogenase | 20.23 | 18.20 |
| ALDH1A3 | Aldehyde dehydrogenase 1 family, member A3 | 43.74 | 32.59 |
| AOX1 | Aldehyde oxidase 1 | 408.11 | 406.60 |
| 2. Reduction | |||
| NDUFS7 | NADH dehydrogenase (ubiquinone) Fe-S protein 7 | −982.96 | −588.23 |
| DHRS7 | Dehydrogenase/reductase (SDR family) member 7 | −973.54 | −914.21 |
| NDUFC2 | NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 | −401.02 | −387.56 |
| NDUFB6 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 | −364.17 | −260.10 |
| NDUFA8 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 | −333.71 | −304.55 |
| NDUFA4 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 | −239.45 | −231.93 |
| NDUFB10 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 | −218.17 | −297.59 |
| NDUFB3 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 | −197.45 | −146.09 |
| NDUFAB1 | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 | −176.69 | −196.89 |
| NDUFA1 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 | −127.18 | −90.95 |
| NDUFS5 | NADH dehydrogenase (ubiquinone) Fe-S protein 5 | −58.90 | −55.42 |
| NDUFB9 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 | −57.96 | −48.39 |
| AKR1B1L | Aldo-keto reductase family 1 member B1-like | −24.11 | −19.85 |
| DHRS13 | Dehydrogenase/reductase (SDR family) member 13 | −22.58 | −16.75 |
| NQO1 | NAD(P)H dehydrogenase, quinone 1 | −21.30 | −17.48 |
| DHRS7B | Dehydrogenase/reductase (SDR family) member 7B | −17.16 | −14.88 |
| NDUFB1 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 | −16.49 | −18.97 |
| C2ORF56 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 | −16.30 | −11.68 |
| NDUFA9 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 | −14.33 | −22.15 |
| NDUFS3 | NADH dehydrogenase (ubiquinone) Fe-S protein 3 | −12.14 | −13.95 |
| NDUFS8 | NADH dehydrogenase (ubiquinone) Fe-S protein 8 | −11.19 | −13.53 |
| NDUFB8 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 | −10.82 | −8.97 |
| NDUFA5 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 | −7.04 | −8.13 |
| AKR1B1L | Aldo-keto reductase family 1, member B1-like (aldose reductase) | −6.67 | −7.04 |
| NDUFA2 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 | −4.97 | −4.81 |
| NDUFA10 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 | −3.92 | −3.44 |
| NDUFV1 | NADH dehydrogenase (ubiquinone) flavoprotein 1 | −2.90 | −2.41 |
| AKR1B10L1 | Aldo-keto reductase family 1 member B10-like 1 | −2.85 | −3.28 |
| NQO2 | NAD(P)H dehydrogenase, quinone 2 | −2.37 | −2.55 |
| DHRS4 | Dehydrogenase/reductase (SDR family) member 4 | −2.37 | −2.13 |
| NOX4 | NADPH oxidase 4 (NOX4) | 2.12 | 2.53 |
| NSDHL | NAD(P)-dependent steroid dehydrogenase-like | 2.62 | 2.36 |
| AKR1A1 | Aldo-keto reductase family 1, member A1 (aldehyde reductase) | 3.41 | 2.86 |
| NDUFS1 | NADH dehydrogenase (ubiquinone) Fe-S protein 1 | 6.22 | 5.07 |
| NDUFAF1 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 | 7.14 | 7.26 |
| DHRS12 | Dehydrogenase/reductase (SDR family) member 12 | 7.27 | 7.92 |
| DHRS11 | Dehydrogenase/reductase (SDR family) member 11 | 8.59 | 5.37 |
| NDUFV3 | NADH dehydrogenase (ubiquinone) flavoprotein 3 | 12.19 | 11.68 |
| NDUFV2 | NADH dehydrogenase (ubiquinone) flavoprotein 2 | 19.40 | 15.46 |
| AKR1B10 | Aldo-keto reductase family 1, member B10 (aldose reductase) | 27.17 | 31.24 |
| NDUFAF4 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 | 44.84 | 46.20 |
| DHRS3 | Dehydrogenase/reductase (SDR family) member 3 | 79.64 | 80.15 |
| NDUFAF2 | NADH: ubiquinone oxidoreductase complex assembly factor 2 | 81.60 | 70.59 |
| NDUFB2 | NADH: ubiquinone oxidoreductase subunit B2 | 144.81 | 129.12 |
| 3. Hydrolysis | |||
| TC382723 | Gallus, complete | −39.13 | −45.18 |
| EPHX1L | Epoxide hydrolase 1-like | −27.91 | −22.21 |
| ABHD13 | Abhydrolase domain containing 13 | −24.36 | −25.14 |
| ABHD5 | Abhydrolase domain containing 5 | −6.42 | −6.43 |
| ABHD11 | Abhydrolase domain containing 11 | N/A | −7.48 |
| ALPL | Alkaline phosphatase, liver/bone/kidney | −4.38 | −4.37 |
| ABHD3 | Abhydrolase domain containing 3 | N/A | −2.23 |
| EPHX2 | Epoxide hydrolase 2, cytoplasmic | −1.57 | −1.56 |
| ABHD2 | Abhydrolase domain containing 2 | 1.42 | 1.18 |
| ABHD17B | Family with sequence similarity 108, member B1 | 1.74 | 1.53 |
| ALPP | Alkaline phosphatase | 2.85 | 2.35 |
| ABHD6 | Abhydrolase domain containing 6 | 35.28 | 35.76 |
| ABHD10 | Abhydrolase domain containing 10 | 37.78 | 32.21 |
| ABHD12 | Abhydrolase domain containing 12 | 84.66 | 99.15 |
Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.
List of Genes Regulating Phase I Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/egg of N-Nitrosodiethanolamine (NDELA)
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Oxidation | |||
| CYTB | Cytochrome b | −510.40 | −493.15 |
| CYB5A | Cytochrome b5 type A (microsomal) | −353.72 | −294.36 |
| CYB5R2 | Cytochrome b5 reductase 2 | −82.85 | −69.29 |
| CYP2D6 | Cytochrome P450, family 2, subfamily D, polypeptide 6 | −49.43 | −45.67 |
| CYCS | Cytochrome c, somatic | −48.33 | −32.25 |
| CYB5B | Cytochrome b5 outer mitochondrial membrane | −43.95 | −36.53 |
| CYP27A1 | Cytochrome P450, family 27, subfamily A, polypeptide 1 | −39.58 | −25.79 |
| CYP2C18 | Cytochrome P450, family 2, subfamily C, polypeptide 18 | −14.98 | −11.50 |
| CYP2AC1 | Cytochrome P450, family 2, subfamily AC, polypeptide 1 | −14.56 | −15.81 |
| CYP1A1 | Cytochrome P450, family 1, subfamily A, polypeptide 1 | −11.74 | −10.22 |
| CYP3A7 | Cytochrome P450 A 37 | −11.09 | −10.12 |
| CYP1A4 | Cytochrome P450 1A4 | −3.96 | −5.55 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 22 | −3.91 | −3.50 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 2 | −3.87 | −5.71 |
| CYB5R4 | Cytochrome b5 reductase 4 | −3.00 | −2.67 |
| CYP2U1 | Cytochrome P450 family 2 subfamily U member 1 | −1.66 | −1.34 |
| CYB5D2 | Cytochrome b5 domain containing 2 | −1.48 | −2.41 |
| POR | Cytochrome P450 oxidoreductase | 1.67 | 1.61 |
| CYP2J22 | Cytochrome P450, family 2, subfamily J, polypeptide 22 | 1.70 | 1.69 |
| CYP1A5 | Cytochrome P450 | 2.05 | 2.79 |
| CYP20A1 | Cytochrome P450, family 20, subfamily A, polypeptide 1 | 3.68 | 2.87 |
| CYP2W1 | Cytochrome P450 family 2 subfamily W member 1 | 3.88 | 4.79 |
| CYP2AB4 | Cytochrome P450, family 2, subfamily AB, polypeptide 4 | 4.24 | 4.12 |
| CYP17A1 | Cytochrome P450, family 17, subfamily A, polypeptide 1 | 4.98 | 4.08 |
| CYBASC3 | Cytochrome b, ascorbate dependent 3 | 5.51 | 3.95 |
| CYP2C23A | Cytochrome P450, family 2, subfamily C, polypeptide 23a | 12.92 | 11.32 |
| CYP7B1 | Cytochrome P450, family 7, subfamily B, polypeptide 1 | 18.63 | 14.31 |
| CYP1B1 | Cytochrome P450 family 1 subfamily B member 1 | 27.35 | 22.37 |
| CYP21A2 | Cytochrome P450, family 21, subfamily A, polypeptide 2 | 55.93 | 52.22 |
| CYBRD1 | Cytochrome b reductase 1 | 56.57 | 57.05 |
| CYP27C1 | Cytochrome P450, family 27, subfamily C, polypeptide 1 | 181.57 | 171.64 |
| CYP2J24P | Cytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene | 875.17 | 684.93 |
| 1.1. Non-microsomal oxidation | |||
| ALDH9A1 | aldehyde dehydrogenase 9 family member A1 | −275.97 | −277.75 |
| ALDH4A1 | Aldehyde dehydrogenase 4 family, member A1 | −234.74 | −181.99 |
| ADH1C | Alcohol dehydrogenase 1C (class I), gamma polypeptide | −169.11 | −142.19 |
| ADH5 | Alcohol dehydrogenase 5 (class III), chi polypeptide | −155.12 | −139.00 |
| ALDH3A2 | Aldehyde dehydrogenase 3 family, member A2 | −73.81 | −69.88 |
| ALDH1A1 | Aldehyde dehydrogenase 1 family, member A1 | −13.82 | −14.69 |
| ADH6 | Alcohol dehydrogenase 6 (class V) | −9.13 | −9.36 |
| ALDH8A1 | Aldehyde dehydrogenase 8 family, member A1 | −5.61 | −5.55 |
| ALDH1A2 | Aldehyde dehydrogenase 1 family, member A2 | 2.54 | 2.72 |
| MAOB | Monoamine oxidase B | 13.02 | 12.42 |
| ALDH3B1 | Aldehyde dehydrogenase | 20.23 | 18.20 |
| ALDH1A3 | Aldehyde dehydrogenase 1 family, member A3 | 43.74 | 32.59 |
| AOX1 | Aldehyde oxidase 1 | 408.11 | 406.60 |
| 2. Reduction | |||
| NDUFS7 | NADH dehydrogenase (ubiquinone) Fe-S protein 7 | −982.96 | −588.23 |
| DHRS7 | Dehydrogenase/reductase (SDR family) member 7 | −973.54 | −914.21 |
| NDUFC2 | NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 | −401.02 | −387.56 |
| NDUFB6 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 | −364.17 | −260.10 |
| NDUFA8 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 | −333.71 | −304.55 |
| NDUFA4 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 | −239.45 | −231.93 |
| NDUFB10 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 | −218.17 | −297.59 |
| NDUFB3 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 | −197.45 | −146.09 |
| NDUFAB1 | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 | −176.69 | −196.89 |
| NDUFA1 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 | −127.18 | −90.95 |
| NDUFS5 | NADH dehydrogenase (ubiquinone) Fe-S protein 5 | −58.90 | −55.42 |
| NDUFB9 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 | −57.96 | −48.39 |
| AKR1B1L | Aldo-keto reductase family 1 member B1-like | −24.11 | −19.85 |
| DHRS13 | Dehydrogenase/reductase (SDR family) member 13 | −22.58 | −16.75 |
| NQO1 | NAD(P)H dehydrogenase, quinone 1 | −21.30 | −17.48 |
| DHRS7B | Dehydrogenase/reductase (SDR family) member 7B | −17.16 | −14.88 |
| NDUFB1 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 | −16.49 | −18.97 |
| C2ORF56 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 | −16.30 | −11.68 |
| NDUFA9 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 | −14.33 | −22.15 |
| NDUFS3 | NADH dehydrogenase (ubiquinone) Fe-S protein 3 | −12.14 | −13.95 |
| NDUFS8 | NADH dehydrogenase (ubiquinone) Fe-S protein 8 | −11.19 | −13.53 |
| NDUFB8 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 | −10.82 | −8.97 |
| NDUFA5 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 | −7.04 | −8.13 |
| AKR1B1L | Aldo-keto reductase family 1, member B1-like (aldose reductase) | −6.67 | −7.04 |
| NDUFA2 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 | −4.97 | −4.81 |
| NDUFA10 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 | −3.92 | −3.44 |
| NDUFV1 | NADH dehydrogenase (ubiquinone) flavoprotein 1 | −2.90 | −2.41 |
| AKR1B10L1 | Aldo-keto reductase family 1 member B10-like 1 | −2.85 | −3.28 |
| NQO2 | NAD(P)H dehydrogenase, quinone 2 | −2.37 | −2.55 |
| DHRS4 | Dehydrogenase/reductase (SDR family) member 4 | −2.37 | −2.13 |
| NOX4 | NADPH oxidase 4 (NOX4) | 2.12 | 2.53 |
| NSDHL | NAD(P)-dependent steroid dehydrogenase-like | 2.62 | 2.36 |
| AKR1A1 | Aldo-keto reductase family 1, member A1 (aldehyde reductase) | 3.41 | 2.86 |
| NDUFS1 | NADH dehydrogenase (ubiquinone) Fe-S protein 1 | 6.22 | 5.07 |
| NDUFAF1 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 | 7.14 | 7.26 |
| DHRS12 | Dehydrogenase/reductase (SDR family) member 12 | 7.27 | 7.92 |
| DHRS11 | Dehydrogenase/reductase (SDR family) member 11 | 8.59 | 5.37 |
| NDUFV3 | NADH dehydrogenase (ubiquinone) flavoprotein 3 | 12.19 | 11.68 |
| NDUFV2 | NADH dehydrogenase (ubiquinone) flavoprotein 2 | 19.40 | 15.46 |
| AKR1B10 | Aldo-keto reductase family 1, member B10 (aldose reductase) | 27.17 | 31.24 |
| NDUFAF4 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 | 44.84 | 46.20 |
| DHRS3 | Dehydrogenase/reductase (SDR family) member 3 | 79.64 | 80.15 |
| NDUFAF2 | NADH: ubiquinone oxidoreductase complex assembly factor 2 | 81.60 | 70.59 |
| NDUFB2 | NADH: ubiquinone oxidoreductase subunit B2 | 144.81 | 129.12 |
| 3. Hydrolysis | |||
| TC382723 | Gallus, complete | −39.13 | −45.18 |
| EPHX1L | Epoxide hydrolase 1-like | −27.91 | −22.21 |
| ABHD13 | Abhydrolase domain containing 13 | −24.36 | −25.14 |
| ABHD5 | Abhydrolase domain containing 5 | −6.42 | −6.43 |
| ABHD11 | Abhydrolase domain containing 11 | N/A | −7.48 |
| ALPL | Alkaline phosphatase, liver/bone/kidney | −4.38 | −4.37 |
| ABHD3 | Abhydrolase domain containing 3 | N/A | −2.23 |
| EPHX2 | Epoxide hydrolase 2, cytoplasmic | −1.57 | −1.56 |
| ABHD2 | Abhydrolase domain containing 2 | 1.42 | 1.18 |
| ABHD17B | Family with sequence similarity 108, member B1 | 1.74 | 1.53 |
| ALPP | Alkaline phosphatase | 2.85 | 2.35 |
| ABHD6 | Abhydrolase domain containing 6 | 35.28 | 35.76 |
| ABHD10 | Abhydrolase domain containing 10 | 37.78 | 32.21 |
| ABHD12 | Abhydrolase domain containing 12 | 84.66 | 99.15 |
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Oxidation | |||
| CYTB | Cytochrome b | −510.40 | −493.15 |
| CYB5A | Cytochrome b5 type A (microsomal) | −353.72 | −294.36 |
| CYB5R2 | Cytochrome b5 reductase 2 | −82.85 | −69.29 |
| CYP2D6 | Cytochrome P450, family 2, subfamily D, polypeptide 6 | −49.43 | −45.67 |
| CYCS | Cytochrome c, somatic | −48.33 | −32.25 |
| CYB5B | Cytochrome b5 outer mitochondrial membrane | −43.95 | −36.53 |
| CYP27A1 | Cytochrome P450, family 27, subfamily A, polypeptide 1 | −39.58 | −25.79 |
| CYP2C18 | Cytochrome P450, family 2, subfamily C, polypeptide 18 | −14.98 | −11.50 |
| CYP2AC1 | Cytochrome P450, family 2, subfamily AC, polypeptide 1 | −14.56 | −15.81 |
| CYP1A1 | Cytochrome P450, family 1, subfamily A, polypeptide 1 | −11.74 | −10.22 |
| CYP3A7 | Cytochrome P450 A 37 | −11.09 | −10.12 |
| CYP1A4 | Cytochrome P450 1A4 | −3.96 | −5.55 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 22 | −3.91 | −3.50 |
| CYP4A22 | Cytochrome P450 family 4 subfamily A member 2 | −3.87 | −5.71 |
| CYB5R4 | Cytochrome b5 reductase 4 | −3.00 | −2.67 |
| CYP2U1 | Cytochrome P450 family 2 subfamily U member 1 | −1.66 | −1.34 |
| CYB5D2 | Cytochrome b5 domain containing 2 | −1.48 | −2.41 |
| POR | Cytochrome P450 oxidoreductase | 1.67 | 1.61 |
| CYP2J22 | Cytochrome P450, family 2, subfamily J, polypeptide 22 | 1.70 | 1.69 |
| CYP1A5 | Cytochrome P450 | 2.05 | 2.79 |
| CYP20A1 | Cytochrome P450, family 20, subfamily A, polypeptide 1 | 3.68 | 2.87 |
| CYP2W1 | Cytochrome P450 family 2 subfamily W member 1 | 3.88 | 4.79 |
| CYP2AB4 | Cytochrome P450, family 2, subfamily AB, polypeptide 4 | 4.24 | 4.12 |
| CYP17A1 | Cytochrome P450, family 17, subfamily A, polypeptide 1 | 4.98 | 4.08 |
| CYBASC3 | Cytochrome b, ascorbate dependent 3 | 5.51 | 3.95 |
| CYP2C23A | Cytochrome P450, family 2, subfamily C, polypeptide 23a | 12.92 | 11.32 |
| CYP7B1 | Cytochrome P450, family 7, subfamily B, polypeptide 1 | 18.63 | 14.31 |
| CYP1B1 | Cytochrome P450 family 1 subfamily B member 1 | 27.35 | 22.37 |
| CYP21A2 | Cytochrome P450, family 21, subfamily A, polypeptide 2 | 55.93 | 52.22 |
| CYBRD1 | Cytochrome b reductase 1 | 56.57 | 57.05 |
| CYP27C1 | Cytochrome P450, family 27, subfamily C, polypeptide 1 | 181.57 | 171.64 |
| CYP2J24P | Cytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene | 875.17 | 684.93 |
| 1.1. Non-microsomal oxidation | |||
| ALDH9A1 | aldehyde dehydrogenase 9 family member A1 | −275.97 | −277.75 |
| ALDH4A1 | Aldehyde dehydrogenase 4 family, member A1 | −234.74 | −181.99 |
| ADH1C | Alcohol dehydrogenase 1C (class I), gamma polypeptide | −169.11 | −142.19 |
| ADH5 | Alcohol dehydrogenase 5 (class III), chi polypeptide | −155.12 | −139.00 |
| ALDH3A2 | Aldehyde dehydrogenase 3 family, member A2 | −73.81 | −69.88 |
| ALDH1A1 | Aldehyde dehydrogenase 1 family, member A1 | −13.82 | −14.69 |
| ADH6 | Alcohol dehydrogenase 6 (class V) | −9.13 | −9.36 |
| ALDH8A1 | Aldehyde dehydrogenase 8 family, member A1 | −5.61 | −5.55 |
| ALDH1A2 | Aldehyde dehydrogenase 1 family, member A2 | 2.54 | 2.72 |
| MAOB | Monoamine oxidase B | 13.02 | 12.42 |
| ALDH3B1 | Aldehyde dehydrogenase | 20.23 | 18.20 |
| ALDH1A3 | Aldehyde dehydrogenase 1 family, member A3 | 43.74 | 32.59 |
| AOX1 | Aldehyde oxidase 1 | 408.11 | 406.60 |
| 2. Reduction | |||
| NDUFS7 | NADH dehydrogenase (ubiquinone) Fe-S protein 7 | −982.96 | −588.23 |
| DHRS7 | Dehydrogenase/reductase (SDR family) member 7 | −973.54 | −914.21 |
| NDUFC2 | NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 | −401.02 | −387.56 |
| NDUFB6 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 | −364.17 | −260.10 |
| NDUFA8 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 | −333.71 | −304.55 |
| NDUFA4 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 | −239.45 | −231.93 |
| NDUFB10 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 | −218.17 | −297.59 |
| NDUFB3 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 | −197.45 | −146.09 |
| NDUFAB1 | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 | −176.69 | −196.89 |
| NDUFA1 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 | −127.18 | −90.95 |
| NDUFS5 | NADH dehydrogenase (ubiquinone) Fe-S protein 5 | −58.90 | −55.42 |
| NDUFB9 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 | −57.96 | −48.39 |
| AKR1B1L | Aldo-keto reductase family 1 member B1-like | −24.11 | −19.85 |
| DHRS13 | Dehydrogenase/reductase (SDR family) member 13 | −22.58 | −16.75 |
| NQO1 | NAD(P)H dehydrogenase, quinone 1 | −21.30 | −17.48 |
| DHRS7B | Dehydrogenase/reductase (SDR family) member 7B | −17.16 | −14.88 |
| NDUFB1 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 | −16.49 | −18.97 |
| C2ORF56 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 | −16.30 | −11.68 |
| NDUFA9 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 | −14.33 | −22.15 |
| NDUFS3 | NADH dehydrogenase (ubiquinone) Fe-S protein 3 | −12.14 | −13.95 |
| NDUFS8 | NADH dehydrogenase (ubiquinone) Fe-S protein 8 | −11.19 | −13.53 |
| NDUFB8 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 | −10.82 | −8.97 |
| NDUFA5 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 | −7.04 | −8.13 |
| AKR1B1L | Aldo-keto reductase family 1, member B1-like (aldose reductase) | −6.67 | −7.04 |
| NDUFA2 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 | −4.97 | −4.81 |
| NDUFA10 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 | −3.92 | −3.44 |
| NDUFV1 | NADH dehydrogenase (ubiquinone) flavoprotein 1 | −2.90 | −2.41 |
| AKR1B10L1 | Aldo-keto reductase family 1 member B10-like 1 | −2.85 | −3.28 |
| NQO2 | NAD(P)H dehydrogenase, quinone 2 | −2.37 | −2.55 |
| DHRS4 | Dehydrogenase/reductase (SDR family) member 4 | −2.37 | −2.13 |
| NOX4 | NADPH oxidase 4 (NOX4) | 2.12 | 2.53 |
| NSDHL | NAD(P)-dependent steroid dehydrogenase-like | 2.62 | 2.36 |
| AKR1A1 | Aldo-keto reductase family 1, member A1 (aldehyde reductase) | 3.41 | 2.86 |
| NDUFS1 | NADH dehydrogenase (ubiquinone) Fe-S protein 1 | 6.22 | 5.07 |
| NDUFAF1 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 | 7.14 | 7.26 |
| DHRS12 | Dehydrogenase/reductase (SDR family) member 12 | 7.27 | 7.92 |
| DHRS11 | Dehydrogenase/reductase (SDR family) member 11 | 8.59 | 5.37 |
| NDUFV3 | NADH dehydrogenase (ubiquinone) flavoprotein 3 | 12.19 | 11.68 |
| NDUFV2 | NADH dehydrogenase (ubiquinone) flavoprotein 2 | 19.40 | 15.46 |
| AKR1B10 | Aldo-keto reductase family 1, member B10 (aldose reductase) | 27.17 | 31.24 |
| NDUFAF4 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 | 44.84 | 46.20 |
| DHRS3 | Dehydrogenase/reductase (SDR family) member 3 | 79.64 | 80.15 |
| NDUFAF2 | NADH: ubiquinone oxidoreductase complex assembly factor 2 | 81.60 | 70.59 |
| NDUFB2 | NADH: ubiquinone oxidoreductase subunit B2 | 144.81 | 129.12 |
| 3. Hydrolysis | |||
| TC382723 | Gallus, complete | −39.13 | −45.18 |
| EPHX1L | Epoxide hydrolase 1-like | −27.91 | −22.21 |
| ABHD13 | Abhydrolase domain containing 13 | −24.36 | −25.14 |
| ABHD5 | Abhydrolase domain containing 5 | −6.42 | −6.43 |
| ABHD11 | Abhydrolase domain containing 11 | N/A | −7.48 |
| ALPL | Alkaline phosphatase, liver/bone/kidney | −4.38 | −4.37 |
| ABHD3 | Abhydrolase domain containing 3 | N/A | −2.23 |
| EPHX2 | Epoxide hydrolase 2, cytoplasmic | −1.57 | −1.56 |
| ABHD2 | Abhydrolase domain containing 2 | 1.42 | 1.18 |
| ABHD17B | Family with sequence similarity 108, member B1 | 1.74 | 1.53 |
| ALPP | Alkaline phosphatase | 2.85 | 2.35 |
| ABHD6 | Abhydrolase domain containing 6 | 35.28 | 35.76 |
| ABHD10 | Abhydrolase domain containing 10 | 37.78 | 32.21 |
| ABHD12 | Abhydrolase domain containing 12 | 84.66 | 99.15 |
Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.
List of Genes Regulating Phase II Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/Egg N-Nitrosodiethanolamine (NDELA)
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Methylation | |||
| METTL7A | Methyltransferase like 7A | N/A | −125.47 |
| METTL21D | Methyltransferase valosin containing protein lysine (K) | −66.97 | −50.59 |
| METTL5 | Methyltransferase like 5 | −8.38 | −8.11 |
| METTL10 | Methyltransferase like 10 | −8.34 | −6.79 |
| METTL9 | Methyltransferase like 9 | −4.62 | −4.01 |
| METTL21A | Methyltransferase like 21A | −4.09 | −4.42 |
| METTL11A | Methyltransferase like 11A | −4.02 | −3.26 |
| METTL15 | Methyltransferase like 15 | −2.96 | −2.47 |
| METTL6 | Methyltransferase like 6 | 1.11 | 1.52 |
| METTL2A | Methyltransferase like 2A | 3.19 | 2.82 |
| METTL18 | Methyltransferase like 18 | 4.74 | 6.11 |
| METTL13 | Methyltransferase like 13 | 19.39 | 20.18 |
| METTL22 | Methyltransferase-like protein 22 | 23.21 | 27.48 |
| 2. Sulfation | |||
| SULT1B1 | Sulfotransferase family, cytosolic, 1B, member 1 | −59.58 | −75.50 |
| SULT1E1 | Sulfotransferase family 1E, estrogen-preferring, member 1 | −33.02 | −25.56 |
| SULT | Sulfotransferase | −8.43 | −8.91 |
| NDST2 | N-Deacetylase and N-sulfotransferase 2 | −2.45 | −2.33 |
| SULT6B1L | Sulfotransferase family, cytosolic, 6B, member 1-like | −1.62 | −1.31 |
| SULT1C3 | Sulfotransferase family, cytosolic, 1C, member 3 | N/A | −459.77 |
| NDST1 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 | 1.39 | 2.05 |
| SULT6B1 | Sulfotransferase family, cytosolic, 6B, member 1 | 12.30 | 14.69 |
| NDST3 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 | 31.45 | 28.11 |
| 3. Conjugation with glutathione | |||
| GPX1 | Glutathione peroxidase 1 | −1147.61 | N/A |
| GSTZ1 | Glutathione S-transferase zeta 1 | −145.76 | −219.59 |
| GSTAL3 | Glutathione S-transferase class-alpha-like 3 | −129.59 | −111.58 |
| MGST3 | MICROSOMAL glutathione S-transferase 3 | −71.22 | −78.12 |
| GPX4 | Phospholipid hydroperoxide glutathione peroxidase | −69.71 | −96.71 |
| GSTM2 | Glutathione S-transferase mu 2 (muscle) | −48.89 | −40.49 |
| GSR | Glutathione reductase | −40.95 | −30.70 |
| GSTA | Glutathione S-transferase class-alpha | −27.26 | −65.28 |
| GSTO1 | Glutathione S-transferase omega 1 | −23.77 | −17.78 |
| GSTA3 | Glutathione S-transferase alpha 3 | −6.26 | −5.31 |
| GPX3 | Glutathione peroxidase 3 | −2.81 | −2.01 |
| GSTCD | Glutathione S-transferase, C-terminal domain containing | 1.22 | 1.65 |
| MGST2 | Microsomal glutathione S-transferase 2 | 4.60 | 5.85 |
| GSS | Glutathione synthetase | 5.89 | 4.63 |
| 4. Acetylation | |||
| NAT8B | N-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) | −20.66 | −16.13 |
| NAT | N-Acetyltransferase, liver isozyme | −11.58 | −9.91 |
| NAT8L | N-Acetyltransferase 8-like (GCN5-related, putative) | −5.00 | −4.24 |
| NAT9 | N-Acetyltransferase 9 (GCN5-related, putative) | −4.25 | −4.74 |
| 5. Glucuronidation | |||
| GALNT7 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 | −37.27 | −30.72 |
| UGDH | UDP-glucose 6-dehydrogenase (UGDH) | −32.39 | −23.46 |
| B4GALT2 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2 | −23.97 | −17.33 |
| UGP2 | UDP-glucose pyrophosphorylase 2 (UGP2) | −7.22 | −8.96 |
| B4GALT4 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4 | −6.93 | −8.29 |
| UXS1 | UDP-glucuronate decarboxylase 1 | −5.99 | −5.15 |
| B4GALT7 | Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) | −5.74 | −6.21 |
| B3GNT2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2 | −4.74 | −4.76 |
| GALE | UDP-galactose-4-epimerase | −1.24 | −1.58 |
| B3GNTL1 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 1 | 1.47 | 1.57 |
| B3GALT2 | UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 2 | 1.50 | 1.80 |
| B4GALT5 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 5 | 1.56 | 1.94 |
| GALNTL4 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 4 | 1.79 | 2.23 |
| UGGT1 | UDP-glucose glycoprotein glucosyltransferase 1 | 2.34 | 1.78 |
| UGT2A3 | UDP glucuronosyltransferase 2 family, polypeptide A1 | 2.47 | 3.25 |
| B4GALT1 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 1 | 2.75 | 2.72 |
| B3GNT5 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 5 | 3.19 | 3.12 |
| UGT8 | UDP-galactose ceramide galactosyltransferase | 3.20 | 2.94 |
| UGCG | UDP-glucose ceramide glucosyltransferase | 3.28 | 3.22 |
| GALNT11 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 11 | 3.41 | 2.37 |
| B3GNT7 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 7 | 4.30 | 4.49 |
| B3GAT1 | beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P) | 4.80 | 2.61 |
| GALNT6 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 6 | 5.38 | 6.71 |
| GALNT12 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 12 | 5.83 | 4.02 |
| UGGT2 | UDP-glucose glycoprotein glucosyltransferase 2 | 6.38 | 6.07 |
| GALNT10 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 10 | 7.23 | 6.18 |
| B3GALT6 | UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 6 | 10.21 | 12.24 |
| B3GALTL | beta 1, 3-galactosyltransferase-like | 10.41 | 9.65 |
| GALNTL1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 16 | 14.74 | 12.28 |
| GALNT1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1 | 31.02 | 37.33 |
| GALNTL6 | polypeptide N-acetylgalactosaminyltransferase-like 6 | 38.41 | 30.19 |
| GALNT13 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 13 | 39.06 | 36.56 |
| B3GNT9 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 9 | 53.98 | 46.67 |
| B3GNTL2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 2 | 67.86 | 143.99 |
| GALNT14 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14 | 115.30 | 111.64 |
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Methylation | |||
| METTL7A | Methyltransferase like 7A | N/A | −125.47 |
| METTL21D | Methyltransferase valosin containing protein lysine (K) | −66.97 | −50.59 |
| METTL5 | Methyltransferase like 5 | −8.38 | −8.11 |
| METTL10 | Methyltransferase like 10 | −8.34 | −6.79 |
| METTL9 | Methyltransferase like 9 | −4.62 | −4.01 |
| METTL21A | Methyltransferase like 21A | −4.09 | −4.42 |
| METTL11A | Methyltransferase like 11A | −4.02 | −3.26 |
| METTL15 | Methyltransferase like 15 | −2.96 | −2.47 |
| METTL6 | Methyltransferase like 6 | 1.11 | 1.52 |
| METTL2A | Methyltransferase like 2A | 3.19 | 2.82 |
| METTL18 | Methyltransferase like 18 | 4.74 | 6.11 |
| METTL13 | Methyltransferase like 13 | 19.39 | 20.18 |
| METTL22 | Methyltransferase-like protein 22 | 23.21 | 27.48 |
| 2. Sulfation | |||
| SULT1B1 | Sulfotransferase family, cytosolic, 1B, member 1 | −59.58 | −75.50 |
| SULT1E1 | Sulfotransferase family 1E, estrogen-preferring, member 1 | −33.02 | −25.56 |
| SULT | Sulfotransferase | −8.43 | −8.91 |
| NDST2 | N-Deacetylase and N-sulfotransferase 2 | −2.45 | −2.33 |
| SULT6B1L | Sulfotransferase family, cytosolic, 6B, member 1-like | −1.62 | −1.31 |
| SULT1C3 | Sulfotransferase family, cytosolic, 1C, member 3 | N/A | −459.77 |
| NDST1 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 | 1.39 | 2.05 |
| SULT6B1 | Sulfotransferase family, cytosolic, 6B, member 1 | 12.30 | 14.69 |
| NDST3 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 | 31.45 | 28.11 |
| 3. Conjugation with glutathione | |||
| GPX1 | Glutathione peroxidase 1 | −1147.61 | N/A |
| GSTZ1 | Glutathione S-transferase zeta 1 | −145.76 | −219.59 |
| GSTAL3 | Glutathione S-transferase class-alpha-like 3 | −129.59 | −111.58 |
| MGST3 | MICROSOMAL glutathione S-transferase 3 | −71.22 | −78.12 |
| GPX4 | Phospholipid hydroperoxide glutathione peroxidase | −69.71 | −96.71 |
| GSTM2 | Glutathione S-transferase mu 2 (muscle) | −48.89 | −40.49 |
| GSR | Glutathione reductase | −40.95 | −30.70 |
| GSTA | Glutathione S-transferase class-alpha | −27.26 | −65.28 |
| GSTO1 | Glutathione S-transferase omega 1 | −23.77 | −17.78 |
| GSTA3 | Glutathione S-transferase alpha 3 | −6.26 | −5.31 |
| GPX3 | Glutathione peroxidase 3 | −2.81 | −2.01 |
| GSTCD | Glutathione S-transferase, C-terminal domain containing | 1.22 | 1.65 |
| MGST2 | Microsomal glutathione S-transferase 2 | 4.60 | 5.85 |
| GSS | Glutathione synthetase | 5.89 | 4.63 |
| 4. Acetylation | |||
| NAT8B | N-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) | −20.66 | −16.13 |
| NAT | N-Acetyltransferase, liver isozyme | −11.58 | −9.91 |
| NAT8L | N-Acetyltransferase 8-like (GCN5-related, putative) | −5.00 | −4.24 |
| NAT9 | N-Acetyltransferase 9 (GCN5-related, putative) | −4.25 | −4.74 |
| 5. Glucuronidation | |||
| GALNT7 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 | −37.27 | −30.72 |
| UGDH | UDP-glucose 6-dehydrogenase (UGDH) | −32.39 | −23.46 |
| B4GALT2 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2 | −23.97 | −17.33 |
| UGP2 | UDP-glucose pyrophosphorylase 2 (UGP2) | −7.22 | −8.96 |
| B4GALT4 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4 | −6.93 | −8.29 |
| UXS1 | UDP-glucuronate decarboxylase 1 | −5.99 | −5.15 |
| B4GALT7 | Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) | −5.74 | −6.21 |
| B3GNT2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2 | −4.74 | −4.76 |
| GALE | UDP-galactose-4-epimerase | −1.24 | −1.58 |
| B3GNTL1 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 1 | 1.47 | 1.57 |
| B3GALT2 | UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 2 | 1.50 | 1.80 |
| B4GALT5 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 5 | 1.56 | 1.94 |
| GALNTL4 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 4 | 1.79 | 2.23 |
| UGGT1 | UDP-glucose glycoprotein glucosyltransferase 1 | 2.34 | 1.78 |
| UGT2A3 | UDP glucuronosyltransferase 2 family, polypeptide A1 | 2.47 | 3.25 |
| B4GALT1 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 1 | 2.75 | 2.72 |
| B3GNT5 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 5 | 3.19 | 3.12 |
| UGT8 | UDP-galactose ceramide galactosyltransferase | 3.20 | 2.94 |
| UGCG | UDP-glucose ceramide glucosyltransferase | 3.28 | 3.22 |
| GALNT11 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 11 | 3.41 | 2.37 |
| B3GNT7 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 7 | 4.30 | 4.49 |
| B3GAT1 | beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P) | 4.80 | 2.61 |
| GALNT6 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 6 | 5.38 | 6.71 |
| GALNT12 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 12 | 5.83 | 4.02 |
| UGGT2 | UDP-glucose glycoprotein glucosyltransferase 2 | 6.38 | 6.07 |
| GALNT10 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 10 | 7.23 | 6.18 |
| B3GALT6 | UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 6 | 10.21 | 12.24 |
| B3GALTL | beta 1, 3-galactosyltransferase-like | 10.41 | 9.65 |
| GALNTL1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 16 | 14.74 | 12.28 |
| GALNT1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1 | 31.02 | 37.33 |
| GALNTL6 | polypeptide N-acetylgalactosaminyltransferase-like 6 | 38.41 | 30.19 |
| GALNT13 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 13 | 39.06 | 36.56 |
| B3GNT9 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 9 | 53.98 | 46.67 |
| B3GNTL2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 2 | 67.86 | 143.99 |
| GALNT14 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14 | 115.30 | 111.64 |
Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.
List of Genes Regulating Phase II Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/Egg N-Nitrosodiethanolamine (NDELA)
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Methylation | |||
| METTL7A | Methyltransferase like 7A | N/A | −125.47 |
| METTL21D | Methyltransferase valosin containing protein lysine (K) | −66.97 | −50.59 |
| METTL5 | Methyltransferase like 5 | −8.38 | −8.11 |
| METTL10 | Methyltransferase like 10 | −8.34 | −6.79 |
| METTL9 | Methyltransferase like 9 | −4.62 | −4.01 |
| METTL21A | Methyltransferase like 21A | −4.09 | −4.42 |
| METTL11A | Methyltransferase like 11A | −4.02 | −3.26 |
| METTL15 | Methyltransferase like 15 | −2.96 | −2.47 |
| METTL6 | Methyltransferase like 6 | 1.11 | 1.52 |
| METTL2A | Methyltransferase like 2A | 3.19 | 2.82 |
| METTL18 | Methyltransferase like 18 | 4.74 | 6.11 |
| METTL13 | Methyltransferase like 13 | 19.39 | 20.18 |
| METTL22 | Methyltransferase-like protein 22 | 23.21 | 27.48 |
| 2. Sulfation | |||
| SULT1B1 | Sulfotransferase family, cytosolic, 1B, member 1 | −59.58 | −75.50 |
| SULT1E1 | Sulfotransferase family 1E, estrogen-preferring, member 1 | −33.02 | −25.56 |
| SULT | Sulfotransferase | −8.43 | −8.91 |
| NDST2 | N-Deacetylase and N-sulfotransferase 2 | −2.45 | −2.33 |
| SULT6B1L | Sulfotransferase family, cytosolic, 6B, member 1-like | −1.62 | −1.31 |
| SULT1C3 | Sulfotransferase family, cytosolic, 1C, member 3 | N/A | −459.77 |
| NDST1 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 | 1.39 | 2.05 |
| SULT6B1 | Sulfotransferase family, cytosolic, 6B, member 1 | 12.30 | 14.69 |
| NDST3 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 | 31.45 | 28.11 |
| 3. Conjugation with glutathione | |||
| GPX1 | Glutathione peroxidase 1 | −1147.61 | N/A |
| GSTZ1 | Glutathione S-transferase zeta 1 | −145.76 | −219.59 |
| GSTAL3 | Glutathione S-transferase class-alpha-like 3 | −129.59 | −111.58 |
| MGST3 | MICROSOMAL glutathione S-transferase 3 | −71.22 | −78.12 |
| GPX4 | Phospholipid hydroperoxide glutathione peroxidase | −69.71 | −96.71 |
| GSTM2 | Glutathione S-transferase mu 2 (muscle) | −48.89 | −40.49 |
| GSR | Glutathione reductase | −40.95 | −30.70 |
| GSTA | Glutathione S-transferase class-alpha | −27.26 | −65.28 |
| GSTO1 | Glutathione S-transferase omega 1 | −23.77 | −17.78 |
| GSTA3 | Glutathione S-transferase alpha 3 | −6.26 | −5.31 |
| GPX3 | Glutathione peroxidase 3 | −2.81 | −2.01 |
| GSTCD | Glutathione S-transferase, C-terminal domain containing | 1.22 | 1.65 |
| MGST2 | Microsomal glutathione S-transferase 2 | 4.60 | 5.85 |
| GSS | Glutathione synthetase | 5.89 | 4.63 |
| 4. Acetylation | |||
| NAT8B | N-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) | −20.66 | −16.13 |
| NAT | N-Acetyltransferase, liver isozyme | −11.58 | −9.91 |
| NAT8L | N-Acetyltransferase 8-like (GCN5-related, putative) | −5.00 | −4.24 |
| NAT9 | N-Acetyltransferase 9 (GCN5-related, putative) | −4.25 | −4.74 |
| 5. Glucuronidation | |||
| GALNT7 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 | −37.27 | −30.72 |
| UGDH | UDP-glucose 6-dehydrogenase (UGDH) | −32.39 | −23.46 |
| B4GALT2 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2 | −23.97 | −17.33 |
| UGP2 | UDP-glucose pyrophosphorylase 2 (UGP2) | −7.22 | −8.96 |
| B4GALT4 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4 | −6.93 | −8.29 |
| UXS1 | UDP-glucuronate decarboxylase 1 | −5.99 | −5.15 |
| B4GALT7 | Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) | −5.74 | −6.21 |
| B3GNT2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2 | −4.74 | −4.76 |
| GALE | UDP-galactose-4-epimerase | −1.24 | −1.58 |
| B3GNTL1 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 1 | 1.47 | 1.57 |
| B3GALT2 | UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 2 | 1.50 | 1.80 |
| B4GALT5 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 5 | 1.56 | 1.94 |
| GALNTL4 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 4 | 1.79 | 2.23 |
| UGGT1 | UDP-glucose glycoprotein glucosyltransferase 1 | 2.34 | 1.78 |
| UGT2A3 | UDP glucuronosyltransferase 2 family, polypeptide A1 | 2.47 | 3.25 |
| B4GALT1 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 1 | 2.75 | 2.72 |
| B3GNT5 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 5 | 3.19 | 3.12 |
| UGT8 | UDP-galactose ceramide galactosyltransferase | 3.20 | 2.94 |
| UGCG | UDP-glucose ceramide glucosyltransferase | 3.28 | 3.22 |
| GALNT11 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 11 | 3.41 | 2.37 |
| B3GNT7 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 7 | 4.30 | 4.49 |
| B3GAT1 | beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P) | 4.80 | 2.61 |
| GALNT6 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 6 | 5.38 | 6.71 |
| GALNT12 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 12 | 5.83 | 4.02 |
| UGGT2 | UDP-glucose glycoprotein glucosyltransferase 2 | 6.38 | 6.07 |
| GALNT10 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 10 | 7.23 | 6.18 |
| B3GALT6 | UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 6 | 10.21 | 12.24 |
| B3GALTL | beta 1, 3-galactosyltransferase-like | 10.41 | 9.65 |
| GALNTL1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 16 | 14.74 | 12.28 |
| GALNT1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1 | 31.02 | 37.33 |
| GALNTL6 | polypeptide N-acetylgalactosaminyltransferase-like 6 | 38.41 | 30.19 |
| GALNT13 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 13 | 39.06 | 36.56 |
| B3GNT9 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 9 | 53.98 | 46.67 |
| B3GNTL2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 2 | 67.86 | 143.99 |
| GALNT14 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14 | 115.30 | 111.64 |
| Symbol . | Description . | DEN . | NDELA . |
|---|---|---|---|
| 1. Methylation | |||
| METTL7A | Methyltransferase like 7A | N/A | −125.47 |
| METTL21D | Methyltransferase valosin containing protein lysine (K) | −66.97 | −50.59 |
| METTL5 | Methyltransferase like 5 | −8.38 | −8.11 |
| METTL10 | Methyltransferase like 10 | −8.34 | −6.79 |
| METTL9 | Methyltransferase like 9 | −4.62 | −4.01 |
| METTL21A | Methyltransferase like 21A | −4.09 | −4.42 |
| METTL11A | Methyltransferase like 11A | −4.02 | −3.26 |
| METTL15 | Methyltransferase like 15 | −2.96 | −2.47 |
| METTL6 | Methyltransferase like 6 | 1.11 | 1.52 |
| METTL2A | Methyltransferase like 2A | 3.19 | 2.82 |
| METTL18 | Methyltransferase like 18 | 4.74 | 6.11 |
| METTL13 | Methyltransferase like 13 | 19.39 | 20.18 |
| METTL22 | Methyltransferase-like protein 22 | 23.21 | 27.48 |
| 2. Sulfation | |||
| SULT1B1 | Sulfotransferase family, cytosolic, 1B, member 1 | −59.58 | −75.50 |
| SULT1E1 | Sulfotransferase family 1E, estrogen-preferring, member 1 | −33.02 | −25.56 |
| SULT | Sulfotransferase | −8.43 | −8.91 |
| NDST2 | N-Deacetylase and N-sulfotransferase 2 | −2.45 | −2.33 |
| SULT6B1L | Sulfotransferase family, cytosolic, 6B, member 1-like | −1.62 | −1.31 |
| SULT1C3 | Sulfotransferase family, cytosolic, 1C, member 3 | N/A | −459.77 |
| NDST1 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 | 1.39 | 2.05 |
| SULT6B1 | Sulfotransferase family, cytosolic, 6B, member 1 | 12.30 | 14.69 |
| NDST3 | N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 | 31.45 | 28.11 |
| 3. Conjugation with glutathione | |||
| GPX1 | Glutathione peroxidase 1 | −1147.61 | N/A |
| GSTZ1 | Glutathione S-transferase zeta 1 | −145.76 | −219.59 |
| GSTAL3 | Glutathione S-transferase class-alpha-like 3 | −129.59 | −111.58 |
| MGST3 | MICROSOMAL glutathione S-transferase 3 | −71.22 | −78.12 |
| GPX4 | Phospholipid hydroperoxide glutathione peroxidase | −69.71 | −96.71 |
| GSTM2 | Glutathione S-transferase mu 2 (muscle) | −48.89 | −40.49 |
| GSR | Glutathione reductase | −40.95 | −30.70 |
| GSTA | Glutathione S-transferase class-alpha | −27.26 | −65.28 |
| GSTO1 | Glutathione S-transferase omega 1 | −23.77 | −17.78 |
| GSTA3 | Glutathione S-transferase alpha 3 | −6.26 | −5.31 |
| GPX3 | Glutathione peroxidase 3 | −2.81 | −2.01 |
| GSTCD | Glutathione S-transferase, C-terminal domain containing | 1.22 | 1.65 |
| MGST2 | Microsomal glutathione S-transferase 2 | 4.60 | 5.85 |
| GSS | Glutathione synthetase | 5.89 | 4.63 |
| 4. Acetylation | |||
| NAT8B | N-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) | −20.66 | −16.13 |
| NAT | N-Acetyltransferase, liver isozyme | −11.58 | −9.91 |
| NAT8L | N-Acetyltransferase 8-like (GCN5-related, putative) | −5.00 | −4.24 |
| NAT9 | N-Acetyltransferase 9 (GCN5-related, putative) | −4.25 | −4.74 |
| 5. Glucuronidation | |||
| GALNT7 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 | −37.27 | −30.72 |
| UGDH | UDP-glucose 6-dehydrogenase (UGDH) | −32.39 | −23.46 |
| B4GALT2 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2 | −23.97 | −17.33 |
| UGP2 | UDP-glucose pyrophosphorylase 2 (UGP2) | −7.22 | −8.96 |
| B4GALT4 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4 | −6.93 | −8.29 |
| UXS1 | UDP-glucuronate decarboxylase 1 | −5.99 | −5.15 |
| B4GALT7 | Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) | −5.74 | −6.21 |
| B3GNT2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2 | −4.74 | −4.76 |
| GALE | UDP-galactose-4-epimerase | −1.24 | −1.58 |
| B3GNTL1 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 1 | 1.47 | 1.57 |
| B3GALT2 | UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 2 | 1.50 | 1.80 |
| B4GALT5 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 5 | 1.56 | 1.94 |
| GALNTL4 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 4 | 1.79 | 2.23 |
| UGGT1 | UDP-glucose glycoprotein glucosyltransferase 1 | 2.34 | 1.78 |
| UGT2A3 | UDP glucuronosyltransferase 2 family, polypeptide A1 | 2.47 | 3.25 |
| B4GALT1 | UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 1 | 2.75 | 2.72 |
| B3GNT5 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 5 | 3.19 | 3.12 |
| UGT8 | UDP-galactose ceramide galactosyltransferase | 3.20 | 2.94 |
| UGCG | UDP-glucose ceramide glucosyltransferase | 3.28 | 3.22 |
| GALNT11 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 11 | 3.41 | 2.37 |
| B3GNT7 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 7 | 4.30 | 4.49 |
| B3GAT1 | beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P) | 4.80 | 2.61 |
| GALNT6 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 6 | 5.38 | 6.71 |
| GALNT12 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 12 | 5.83 | 4.02 |
| UGGT2 | UDP-glucose glycoprotein glucosyltransferase 2 | 6.38 | 6.07 |
| GALNT10 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 10 | 7.23 | 6.18 |
| B3GALT6 | UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 6 | 10.21 | 12.24 |
| B3GALTL | beta 1, 3-galactosyltransferase-like | 10.41 | 9.65 |
| GALNTL1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 16 | 14.74 | 12.28 |
| GALNT1 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1 | 31.02 | 37.33 |
| GALNTL6 | polypeptide N-acetylgalactosaminyltransferase-like 6 | 38.41 | 30.19 |
| GALNT13 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 13 | 39.06 | 36.56 |
| B3GNT9 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 9 | 53.98 | 46.67 |
| B3GNTL2 | UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 2 | 67.86 | 143.99 |
| GALNT14 | UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14 | 115.30 | 111.64 |
Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.
Among phase II genes, B3GALT2, B3GNT5, B3GNTL1, B4GALT5, GALE, GALNTL4 genes were up-regulated (with exception of GALE, which was down-regulated) by NDELA, and not significantly changed in the group that received DEN (Table 3). Additionally, NDELA up-regulated METTL6, NDST1, GSTCD genes, while DEN did not. DEN and NDELA inhibited over 50% of genes responsible for methylation (up to 62%), sulfation (up to 67%), glutathione conjugation (over 79%), and acetylation (100%). In contrast, 60% and 71% of genes involved in glucuronidation, a major detoxication pathway for nitrosamines, were induced by DEN and NDELA, respectively (Table 3).
IPA molecular network analysis also revealed only minor differences between metabolism of DEN and NDELA by embryo-chicken fetal liver (Figs. 4 and 5). The networks altered by DEN and NDELA include genes responsible for oxidation, mainly cytochromes from subfamily B, genes involved in reduction, as well as phase II glutathione conjugation and glucuronidation. Expression of the majority of the genes in the network was inhibited by the nitrosamines (Figs. 4 and 5).
Molecular network interactions of metabolic genes regulated by diethylnitrosamine (DEN) in chicken fetal liver. The IPA database was used to determine and visualize molecular pathways enrichment by the significantly deregulated metabolic genes. Red indicates up-regulated genes. Green indicates down-regulated genes. Note that most genes in the network are inhibited by 2 mg/egg of DEN.
Molecular network interactions of metabolic genes regulated by N-nitrosodiethanolamine (NDELA) in chicken fetal liver. The IPA database was used to determine and visualize molecular pathways enrichment by the significantly deregulated metabolic genes. Red indicates up-regulated genes. Green indicates down-regulated genes. Note that most genes in the network are inhibited by 4 mg/egg of NDELA.
DISCUSSION
In the present study, we have demonstrated that chicken embryo-fetal liver, under the conditions of the CEGA, expresses a wide variety (463) of genes involved in xenobiotic biotransformation. Liver was selected for analyses, since it is the primary organ utilized in CEGA, due to its high metabolic abilities, which in avian fetuses begin to develop on day 5 or even earlier (Clegg, 1964; Hamilton et al., 1983). Such early metabolic activity is due to early differentiation of avian liver, since the development of the avian fetus, in contrast to mammals, is autonomous (Sinclair and Sinclair, 1993). A notable aspect of the study is that influences of many other environmental factors is precluded in CEGA, and thus the effects observed in the model are attributable only to the tested chemicals.
The expression of genes encoding for enzymes involved in phase I and II chemical biotransformation was affected by substrates for the enzymes, two dialkylnitrosamines, DEN and NDELA. These observations are consistent with previous reports of activity of metabolic enzymes in avian liver (Hamilton et al., 1983; Ignarro and Shideman, 1968; Jackson et al., 1986; Perrone et al., 2004; Rifkind et al., 1979, 1994; Sinclair and Sinclair, 1993; Wolf and Luepke, 1997), and the reports that their activity is modulated by the enzyme inducer phenobarbital and other xenobiotics, eg, 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD), 3-methylcholanthrene, and ethanol (Perrone et al., 2004; Rifkind et al., 1979, 1994; Sinclair et al., 1989; Sinclair and Sinclair, 1993). Our findings confirm and extend knowledge on the metabolic competency of avian embryo-fetal liver.
Previous testing of DEN and NDELA in CEGA (Table 1) revealed that chicken fetal liver was capable of bioactivation, evidenced by DNA damage and teratogenic effects produced by DEN in the assay, as well as to differentiate genotoxic and nongenotoxic chemicals, despite their structural similarities (Williams et al., 2014). The analysis of gene expression modulations induced by the two nitrosamines contributes to clarification of the mode of action of these chemicals in CEGA. The tested total dose for each compound was the highest dose previously tested in CEGA, which was known for DEN, to produce effects on both molecular and phenotypic levels, in contrast to NDELA, but not to significantly affect viability of fetuses (Iatropoulos et al., 2017; Williams et al., 2014). Our analyses allows for phenotypic anchoring of chemical-induced gene expression changes with genotoxicity and morphological responses.
Mapping of selected metabolic genes onto IPA-established pathways of xenobiotic metabolism regulation (Supplementary Figure 1) revealed a number of genes present in chicken embryo-fetal livers with orthologs in other organisms. DEN and NDELA exposure in CEGA enriched several pathways consistent with binding and activation of several nuclear receptors: aryl hydrocarbon receptor (AHR), constitutive androstane receptor (CAR), and pregnane X receptor (RXR) (Supplementary Figure 1).
The effects of DEN on gene expression levels overlapped with that of NDELA for the majority of selected genes (Figure 2), which would be expected, since the compounds possess similarities in chemical structures as well as in pathways of biotransformation (Figure 1). Nevertheless, some differences were present, especially in the expression of genes responsible for oxidation and glucuronidation of nitrosamines. This might partially explain the difference in the genotoxic potential of DEN and NDELA in CEGA.
For many xenobiotics, including nitrosamines, biotransformation to a reactive moiety results from oxidation reactions catalyzed by cytochromes. In avian species, many forms of cytochrome P450 are well characterized (Lorr and Bloom, 1987; Sinclair and Sinclair, 1993). The induction of mixed-function oxidase system in avian embryo-fetus has been recorded as early as 3 days of development, with levels of activity being comparable with those reported for adult chicken and other species and thus, considered sufficient for metabolic activation of pro-carcinogens (Hamilton et al., 1983). Moreover, the activity of mixed function oxidases was reported not to depend significantly on the sex of the chicken (Rifkind et al., 1979). Consistently with other species, chicken possesses two genes that belong to CYP1A subfamily (CYP1A4 and CYP1A5) homologous to mammalian CYP1A1 and CYP1A2, which were reported to have overlapping but distinctly different functions (Gilday et al., 1996; Goldstone and Stegeman, 2006; Yang et al., 2013). Other isoforms in avian CYP1-3 families were also identified (Watanabe et al., 2013). Consistent with reports in the literature, exposure to DEN and NDELA significantly up-regulated expression of CYP2C23a which is induced by chicken xenobiotic receptor (CXR) activator, phenobarbital (Watanabe et al., 2013). High expression levels of CYP2J24P, CYP27C1, CYBRD1, and CYP21A2 (Table 2) indicate their importance in metabolism of nitrosamines in chickens. In humans only one CYP2J is present, while in avian species multiple genes of this subfamily were identified (Watanabe et al., 2013). DEN and NDELA strongly down-regulated the expression of cytochromes from B subfamily, ie, CYTB, CYB5A, and CYB5R2, genes also involved in endobiotic metabolism. Such strong inhibition of gene expression could be associated with the depletion of enzymes due to high doses of DEN and NDELA tested, or possibly these enzymes are not utilized in the metabolism of nitrosamines by chicken fetal liver.
Genes from CYP2C subfamily were also modified by DEN and NDELA exposure in CEGA (Table 2). These genes, formerly called CYP2H (Watanabe et al., 2013), encode for enzyme highly inducible by phenobarbital and other xenobiotics (Sinclair et al., 1990).
DEN did not significantly modify the expression of 3 cytochrome genes: CYB5D2, CYP1A5, as CYP2AB4 (gene found only in avian species) (Table 2). It is possible that this difference contributes to a difference in metabolic activation of DEN and NDELA by chicken fetal liver. It is also possible that since these genes are not regulated by DEN, the activity of cytochromes, which are involved in detoxication of DEN by denitrosation, is inhibited.
Published data suggest the importance of CYP2E1 in biotransformation of NDELA via α-hydroxylation pathway, producing an α-hydroxy metabolite which exhibits high levels of cytotoxicity (IARC, 2000; Loeppky, 1999). The avian liver does not possess CYP2E genes (Watanabe et al., 2013), which possibly results in the lack of toxicity of NDELA in CEGA (Iatropoulos et al., 2017; Williams et al., 2014). This correlates with absence of genotoxicity of NDELA in vivo, due to predominant metabolism via β-oxidation (Lijinsky, 1987).
Avian and mammalian sulfotransferases (SULT) have been determined to be closely related structurally and functionally (Wilson et al., 2004). In a study conducted by Sterzel and Eisenbrand (1986), inhibition of SULT was shown to abolish DNA single strand breaks produced by NDELA in rat liver. In the current study, the majority of genes controlling SULT activity were inhibited by DEN and NDELA. Consistent with the findings of Sterzel and Eisenbrand in rats, NDELA did not produce DNA strand breaks in chicken fetal livers (Williams et al., 2014), which could be related to inhibition of SULTs. DEN did produce DNA strand break in CEGA, suggesting that SULT inhibition might not be sufficient to abolish its genotoxicity.
Genes encoding for ALD, another important enzyme in metabolism of nitrosamines (Loeppky, 1999) (Figure 1), were down-regulated by exposure to DEN and NDELA (Table 2), which could again indicate their depletion by high doses of xenobiotics. Meanwhile several aldehyde dehydrogenase (ALDH) genes from family 1 and aldehyde oxidase genes, AOX1, ALDH1A3, ALDH1B1, and ALDH1A2 were significantly induced by exposure to DEN and NDELA. Previous reports also describe the increase of ALDH in rats with liver tumors produced by DEN and described that over half of DEN-produced hepatocellular carcinomas expressed tumor-associated ALDH phenotype (Canuto et al., 1993; Lindahl and Evces, 1987; Wischusen et al., 1983). While changes in ALDH activity in rodents are expressed in late stages of hepatocarcinogenesis, changes in CEGA were observed within 3 days of dosing. Thus, it is possible that induction of ALDH contributes to genotoxicity exhibited by DEN in CEGA. However, no major differences in the expression of ALDH genes were noticed between DEN- and NDELA-dosed eggs making it difficult to account for the role of these genes in genotoxicity of DEN.
The major difference between activity of xenobiotic-related genes in chicken fetal livers after dosing with DEN or NDELA were found in the group of genes that code for UDP glucuronyl transferase (UGT) activity (Table 3). It was reported that nitrosamines are conjugated in rat hepatocytes by UDP UGT, and the extent of glucuronidation depends on the lipophilicity of these chemicals (Wiench et al. 1992). Glucuronidation conjugates of nitrosamines are excreted in urine in laboratory animals and humans and are believed to be detoxication products (Hecht, 1997). In the current study, over 70% of genes encoding for UGT activity were up-regulated by NDELA, which possibly enhanced its detoxication and elimination, confirmed by negative results for its genotoxicity testing in CEGA previously. Meanwhile, DEN-dosed groups had fewer up-regulated glucuronidation genes (Table 3), which probably contributes to its genotoxicity due to lower rates of conjugation and elimination of the compound compared with NDELA.
While glutathione S-transferase (GST) levels were shown to increase in the livers of rats in response to DEN exposure (Canuto et al., 1993; Marinho et al., 1997), and preneoplastic foci produced by DEN in rat liver are positive for placental GST (Hosokawa et al., 1989; Satoh and Hatayama, 2002). In contrast, in CEGA the expression of genes coding for GST activities were mostly down-regulated (Table 3), possibly due to saturation of the pathway by the high dose of nitrosamines. Marked decrease of glutathione transferase activities was previously described after exposure to peroxisome proliferators, eg, nafenopin, clofibrate, due to binding to the enzyme subunit (Furukawa et al., 1985).
The pathway analysis in IPA revealed a network of genes that encode for metabolic enzymes that are known to play an important role in oxidation/hydroxylation of DEN and NDELA in vivo, specifically cytochromes, and ALD (Figs. 1, 4, and 5), as well as enzymes crucial for detoxication of nitrosamines, GST, and UGT. This further confirms similarities between xenobiotic metabolism in ovo and in vivo.
In summary, gene expression profiling in chicken fetal liver confirmed that this organ has an extensive metabolic capacity, which mimics in vivo systems. The majority of genes were deregulated in a similar fashion by DEN and NDELA, indicating similarity in the metabolism of N-nitrosamines in CEGA. Difference in expression of cytochrome and glucuronidation genes could contribute to differences in the effects of DEN and NDELA in CEGA. Thus, the reported sensitivity of the CEGA to a wide variety of genotoxic carcinogens known to require bioactivation is supported by the documented expression of genes for the enzymes involved. The findings strengthen the hypothesis that in ovo models are attractive alternatives to assess a variety of critical endpoints of chemical carcinogenesis.
SUPPLEMENTARY DATA
Supplementary data are available at Toxicological Sciences online.
FUNDING
This work was supported by Boehringer Ingelheim Pharma GmbH & Co.





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