Abstract

The Chicken Egg Genotoxicity Assay (CEGA) demonstrated responsiveness to various DNA-reactive chemicals requiring metabolic activation, which implies broad bioactivation capability. To assess potential metabolic competence, expression profiles of metabolic genes in the embryo-chicken fetal liver were determined using microarray technology. Fertilized chicken eggs were injected under the CEGA protocol with vehicle (deionized water [DW]), the activation-dependent carcinogens, diethylnitrosamine (DEN), and N-nitrosodiethanolamine (NDELA) at doses producing no effect on survival. Previously in CEGA, DEN produced DNA damage, whereas NDELA did not. Expressions of 463 genes known to encode for phase I and II of endo- and xenobiotic metabolism were detected on the array. DW did not affect the expression of the selected genes, deregulating less than 1% of them. In contrast, DEN at 2 mg/egg and NDELA at 4 mg/egg produced significant transcriptomic alterations, up-regulating up to 41% and down-regulating over 31% of studied genes. Both nitrosamines modulated the majority of the genes in a similar manner, sharing 64 up-regulated and 93 down-regulated genes with respect to control group, indicating similarity in the regulation of their metabolism by avian liver. Differences in gene expression between DEN and NDELA were documented for several phase I CYP 450 genes that are responsible for nitrosamine biotransformation, as well as for phase II genes that regulate detoxication reactions. These findings could underlie the difference in genotoxicity of DEN and NDELA in CEGA. In conclusion, the analysis of gene expression profiles in embryo-chicken fetal liver dosed with dialkylnitrosamines demonstrated that avian species possess a complex array of inducible genes coding for biotransformation.

The Chicken Egg Genotoxicity Assay

The Chicken Egg Genotoxicity Assay (CEGA) and the related Turkey Egg Genotoxicity Assay (TEGA) are novel alternatives to animal models, which have been used for the screening of genotoxic potential of a variety of chemicals (Iatropoulos et al., 2017; Kobets et al., 2016,, 2018; Williams et al., 2011a, 2014). TEGA and CEGA were developed as potential follow-up assays to the existing regulatory in vitro assays in an effort to minimize the use of rodent assays. Among important aspects of the in ovo model is the utilization of an intact organism that is not considered to be a live animal in compliance with Animals (Scientific Procedures) Act 1986, since the termination in CEGA occurs 10–11 days before hatching. Additionally, the nervous system of the avian embryo is not finally formed by the termination time point (Hughes, 1953), so potential discomfort to the organism during the procedure and termination does not occur. Thus, CEGA provides a useful replacement for in vivo genotoxicity assessment where the use of animals is undesirable or precluded. Rigorous CEGA protocol precludes many artifacts, including influences of numerous environmental factors, which is difficult to accomplish in other mature experimental animals.

Currently, CEGA is the only nonanimal model that allows for an extensive evaluation of multiple critical endpoints in the avian fetal liver indicative of potential genotoxicity, namely the comet assay for detection of DNA strand breaks (Ostling and Johanson, 1984; Singh et al., 1988; Tice et al., 2000), and the nucleotide 32P-postlabeling assay for DNA adducts detection (Phillips and Arlt, 2014; Randerath et al., 1981). Also, the model allows assessment of other critical endpoints, including biotransformation activities (Perrone et al., 2004), cell proliferation (unpublished), histopathologic evaluation (Iatropoulos et al., 2017), and as reported here, transcriptomic analysis.

The genotoxic effects of chemicals in CEGA and TEGA are similar to those in vivo (Iatropoulos et al., 2017; Kobets et al., 2016, 2018; Williams et al., 2011a, 2014), which reflects the fact that the development and histopathological structure of the avian liver resembles that of rodents and humans (Golbar et al., 2012; Iatropoulos et al., 2017; Ross and Pawlina, 2006; Yokouchi, 2005). Moreover, avian fetal liver in early stages of development is involved in all of the metabolic processes required to sustain the developing autonomous organism (Lorr and Bloom, 1987; Sinclair and Sinclair, 1993). Thus, avian fetal liver expresses major phase I and phase II biotransformation enzymes (Hamilton et al., 1983; Ignarro and Shideman, 1968; Jackson et al., 1986; Perrone et al., 2004; Rifkind et al., 1979,, 1994; Sinclair and Sinclair, 1993; Wolf and Luepke, 1997), activity of which is comparable to that in postnatal rodents (Perrone et al., 2004). These enzymes often play a major role in bioactivation of genotoxic chemical carcinogens, thereby making CEGA and TEGA attractive models for detecting effects of activation-dependent carcinogens without using an exogenous source of enzymes. Moreover, mimicking in vivo models, the avian embryo-fetus is capable of detoxication and elimination of xenobiotics, in contrast to in vitro systems (Perrone et al., 2004; Romanoff, 1960; Wolf and Luepke, 1997).

Additionally, CEGA is the first alternative genotoxicity model, which also allows analysis of tissue-specific gene expression, since it utilizes the liver of an intact organism as opposed to in vitro methods. A highly specific and sensitive, validated high-throughput microarray platform, allows the study of chicken functional genomics (Li et al., 2008). Similar to other vertebrates, approximately 35 000 distinct transcripts were identified in chicken, almost 40% of which have orthologs in other organisms (Boardman et al., 2002). Moreover, published literature provides proof of the positive correlation between gene expression patterns in chicken and other vertebrates (Nie et al., 2010), providing additional evidence that avian species can be utilized along with rodent models. While the presence of liver-specific endo- and xenobiotic-related genes has been previously described in chicken (Li et al., 2009), the modulation of their expression in response to xenobiotic exposure has not been investigated in detail.

Accordingly, in the current study, gene expression data from chicken fetal liver were analyzed for the presence and expression of genes that code for enzymes involved in the metabolism of endo- and xenobiotics. Gene activity was assessed following repeat administration under CEGA conditions of two activation-dependent carcinogenic N-nitrosamines, diethylnitrosamine (DEN), and N-nitrosodiethanolamine (NDELA), compared with the control group injected with vehicle (DW). Data were also obtained on other genes present on the platform, but the current report focuses only on the findings for the expression of metabolic genes in order to support the proficiency of avian embryo-fetal liver in chemical biotransformation.

N-Nitrosamines

Nitrosamines have been extensively evaluated in various animal species, revealing that the majority of compounds from this group produced sufficient evidence for carcinogenicity in laboratory animals. Both, DEN and NDELA in experimental animals induce tumors in multiple sites, including liver (IARC, 1978, 2000; Lijinsky, 1987).

These nitrosamines were previously evaluated in CEGA for their genotoxic potential, revealing that DEN produced DNA damage, whereas NDELA did not (Williams et al., 2014). Similar results were obtained in another in ovo model, hen’s egg micronucleus assay, which assesses mutagenic properties of chemical agents (Wolf et al., 2003). Phenotypic changes produced by these chemicals in the chicken fetal liver were congruent with the molecular alterations observed in CEGA (Iatropoulos et al., 2017). Specifically, DEN produced dose-related distortion of liver architecture, whereas livers in a group dosed with NDELA resembled those in control groups. In addition, only DEN produced agenesis of the gallbladder in chicken and turkey fetuses (Iatropoulos et al., 2017; Williams et al. 2011b). In rodents, the teratogenic potential of DEN has not been reported, which was attributed to lack of activating enzymes in the fetus (Arcos et al., 1982; IARC, 1978). Table 1 summarizes previous findings of testing DEN and NDELA in CEGA.

Table 1.

Previous Findings of Diethylnitrosamine (DEN) and N-Nitrosodiethanolamine (NDELA) Testing in CEGA

CompoundDose Tested*, mg/eggAssayResultsReferences
DEN0.125–4Comet+Williams et al. (2014)
0.125–4NPLWilliams et al. (2014)
1–2Histopathological evaluationDEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasiaIatropoulos et al. (2017)
NDELA0.5–4CometWilliams et al. (2014)
0.5–4NPLWilliams et al. (2014)
4Histopathological evaluationIn groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control groupIatropoulos et al. (2017)
CompoundDose Tested*, mg/eggAssayResultsReferences
DEN0.125–4Comet+Williams et al. (2014)
0.125–4NPLWilliams et al. (2014)
1–2Histopathological evaluationDEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasiaIatropoulos et al. (2017)
NDELA0.5–4CometWilliams et al. (2014)
0.5–4NPLWilliams et al. (2014)
4Histopathological evaluationIn groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control groupIatropoulos et al. (2017)

+, positive; –, negative. *, administered in 3 daily doses on days 9, 10, and 11, with termination on days 11 (comet and NPL) or 12 and 18 (histopathological evaluation). NPL, 32P-nucleotide postlabeling assay.

Table 1.

Previous Findings of Diethylnitrosamine (DEN) and N-Nitrosodiethanolamine (NDELA) Testing in CEGA

CompoundDose Tested*, mg/eggAssayResultsReferences
DEN0.125–4Comet+Williams et al. (2014)
0.125–4NPLWilliams et al. (2014)
1–2Histopathological evaluationDEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasiaIatropoulos et al. (2017)
NDELA0.5–4CometWilliams et al. (2014)
0.5–4NPLWilliams et al. (2014)
4Histopathological evaluationIn groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control groupIatropoulos et al. (2017)
CompoundDose Tested*, mg/eggAssayResultsReferences
DEN0.125–4Comet+Williams et al. (2014)
0.125–4NPLWilliams et al. (2014)
1–2Histopathological evaluationDEN at 1 mg/egg produced distortion of hepatocellular trabecular pattern as well as severe cholangiocellular anisokaryosis, anisocytosis, and dysplasia. At 2 mg/egg, DEN produced gallbladder agenesis and compensatory ductal metaplasiaIatropoulos et al. (2017)
NDELA0.5–4CometWilliams et al. (2014)
0.5–4NPLWilliams et al. (2014)
4Histopathological evaluationIn groups dosed with 4 mg/egg of NDELA hepatocellular trabecular pattern was intact with resident cell populations and elements of the ECM resembling the morphology of vehicle control groupIatropoulos et al. (2017)

+, positive; –, negative. *, administered in 3 daily doses on days 9, 10, and 11, with termination on days 11 (comet and NPL) or 12 and 18 (histopathological evaluation). NPL, 32P-nucleotide postlabeling assay.

Genotoxicity and carcinogenicity of nitrosamines is attributed to their metabolic conversion to form alkylating agents (Lijinsky, 1987). These active metabolites then react with macromolecules, such as RNA and DNA, producing adducts at various sites, eg, O6 of guanine, O2 and O4 of thymidine and uridine, and N6 of adenosine (Loveless, 1969; Magee, 1971; Swann and Magee, 1968). While DEN, as is the case for most genotoxic nitrosamines, is activated by cytochrome P450-mediated α-hydroxylation of the carbon adjacent to the nitrosamino group, the major metabolic route for NDELA is β-oxidation mediated by alcohol dehydrogenase (ALD) (Figure 1) (Bonfanti et al., 1987; Loeppky, 1999). This difference in metabolic routes can contribute to differences in genotoxic potential of DEN and NDELA (Lijinsky, 1987). Some studies also suggest that sulfation can play a role in activation of NDELA (Sterzel and Eisenbrand, 1986). Denitrosation, which also is mediated by cytochromes, is considered to be a detoxication pathway for nitrosamines, which competes with activation pathways (Hecht, 1997). The major elimination of the nitrosamines occurs in urine either unchanged or conjugated with glucuronide or sulfate (IARC, 1978,, 2000).

Figure 1.

Metabolic conversion of diethylnitrosamine (DEN) and N-nitrosodiethanolamine (NDELA). ADH, alcohol dehydrogenase; CYP, cytochrome P450; NAD, nicotinamide-adenine dinucleotide; NADPH, nicotinamide-adenine dinucleotide phosphate (reduced form).

MATERIALS AND METHODS

Tested chemicals

The chemical structures of the tested compounds are shown in Figure 1. DEN (CAS: 55-18-5; ≥99% pure as reported by the supplier) and NDELA (CAS: 1116-54-7; ≥90%) were purchased from Sigma-Aldrich (St. Louis, Missouri). Deionized water (DW) prepared with a Picopure System (Hydro Services and Supplies, Garfield, New Jersey), which has an online resistance (10 MOhm) monitor, was used as a vehicle for both chemicals.

Experimental design

Fertilized specific pathogen-free premium white leghorn chicken (Gallus gallus) eggs of undetermined sex were purchased from Charles River (North Franklin, Connecticut). Upon arrival, eggs were numbered, weighed, and randomly divided into control and dosed groups (at least 10 eggs per group). The first day of incubation was designated as Day 0. Eggs were incubated in GQF Manufacturing Company Hova Bator Model 2362N styrofoam incubators (Murray McMurray Hatchery, Webster City, Iowa) with automatic egg turners at 37 ± 0.5°C and 60 ± 5% humidity. Viability was assessed on day 8 by transillumination, eggs that did not develop were eliminated. Control and dosed eggs were separated to avoid cross contamination. Doses of compounds were selected based on the previous findings in CEGA (Williams et al., 2014). The dose selected was the dose that produced genotoxic and morphologic effects but/or did not produce a decrease in viability levels higher than 50% (at least 50% of fetuses in the group are viable upon opening eggs at termination), in order to avoid false positive results due to cytotoxicity. Vehicle (DW) as well as tested compounds, DEN at 2 mg/egg and NDELA at 4 mg/egg, were administered in total volume of 0.15 ml/egg via 3 daily injections into the air sac on days 9 through 11 of incubation. An additional group, environmental control, did not receive any injections. Chicken fetuses were terminated 3 h after the last injection by decapitation. Fetal weights were recorded. Livers were removed and weighed, and frozen at −80°C for subsequent gene expression analysis.

RNA extraction

Total RNA was extracted from chicken fetal liver (n = 4 liver samples per group per compound) using RNeasy Mini kit (Qiagen, Valencia, California) according to the manufacturer’s protocol. The concentration of samples was determined by NanoDrop ND-2000 Spectrophotometer (NanoDrop Technologies, Wilmington, Delaware). The quality of total RNA was assessed on Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, California), and RNA integrity number (RIN) was established to be on average 9.6, ranging from 10 to 8.7 for each sample.

Microarray

About 825 ng of RNA (with RIN > 9.10) was reverse transcribed and labeled with fluorescent tags Cy3/Cy5 dUTP using Low Input Quick Amp Labeling Kit (Agilent Technologies). Microarray processing was performed in 4 biological replicas (4 samples [replicas] per group) as detailed in a previously published protocol (Velíšková et al., 2015) using Agilent 60 whole genome 4X44 chicken V2 microarray platform (Agilent Technologies). The hybridized slides were scanned with an Agilent Dual Laser Scanner G2539A (Agilent Technologies). The resulting images were analyzed using Agilent Feature Extraction 11.1 software. The raw intensity values were normalized using previously published algorithms (Lee et al., 2017).

Gene expression data complying with the “Minimum Information about Microarray Experiments” (MIAME) have been made available in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database (http://www.ncbi.nlm.nih.gov/geo) as series GSE110904 and GSE110906.

Statistical and bioinformatic analysis of microarray data
Genes were considered as regulated if their absolute fold-change exceeded the pool estimate of biological variability and technical noise (Iacobas et al., 2018). The regulation was considered as significant if the p-value of the paired t-test with Bonferroni correction for multiple testing was less than 0.05 (Iacobas et al., 2007). The similarity SIM between the transcriptomic effects of the two treatments was calculated as:
SIM={DD}+{UU}{DU}{UD}{DD}+{UU}+{DU}+{UD}+{DX}+{UX}+{XD}+{XU}×100%
where {AB} is the number of genes that were A (=up (U), down (D) or not (X)) significantly regulated in DEN-dosed eggs and B (=U/D/X) regulated in NDELA-dosed eggs.

The Pearson product-moment correlation coefficient was computed between the fold changes of genes in eggs dosed with DEN and NDELA with respect to eggs dosed with vehicle only.

Manual search, Database for Annotation, Visualization and Integrated Discovery (DAVID), the Kyoto Encyclopedia of Genes and Genomes (KEGG), and Ingenuity Pathway Analysis (IPA) software were used for functional annotation, gene ontology analysis, and visualization of data. The “core analysis” function in the IPA software was used to categorize and visualize biological functions and gene networks. For each molecular pathway, p-value was calculated on the basis of a right-tailed Fisher exact test. This test measures an overlap between genes significantly expressed in the experiment and predicted regulated gene set in a particular pathway (Krämer et al., 2014). Pathways with p-value <.05 were considered significant.

RESULTS

The viability of embryo-fetuses in control and dosed groups was 100%, indicating absence of toxicity.

Out of 26 145 genes present on the array, 463 genes were selected (manually and using IPA and KEGG software) for analysis based on their role in endo- and xenobiotic biotransformation. Expression of those genes in the vehicle control group (DW) were similar to that in the environmental control group, less than 1% of genes involved in encoding of xenobiotic biotrasformation enzymes were deregulated in DW group. In contrast, DEN at 2 mg/egg and NDELA, at 4 mg/egg produced significant changes in gene expression patterns. As illustrated in Figure 2, most xenobiotic genes were expressed in a similar manner in groups dosed with DEN and NDELA. The similarity (SIM) index of the two groups (see Materials and Methods section) was 90.23% (Figure 2). The correlation between replicas was 0.979, indicating high consistency and high experimental quality. DEN up-regulated 66 and down-regulated 95 of metabolic genes, and NDELA up-regulated 75 and down-regulated 100 genes involved in regulation of chemical metabolism. Both compounds shared 64 up-regulated and 93 down-regulated genes.

Figure 2.

Microarray analysis of gene expression in the chicken fetal livers dosed with diethylnitrosamine (DEN) and N-nitrosodiethanolamine (NDELA) with respect to control group dosed with DW. Fold change (negative for down-regulation) of xenobiotic genes in DEN dosed eggs plotted against fold changes in NDELA dosed eggs. Note that most genes fall close to the diagonal (red line) of the equal regulation by the 2 compounds. Gene symbols are shown where space allowed.

IPA functional annotation of significantly deregulated metabolic genes, revealed significant (p =6.92E-21) enrichment of metabolism signaling molecular pathway by either DEN or NDELA exposure (Figure 3, Supplementary Table 1). Analysis also revealed significant enrichment of cytochrome P450 panel in humans, rat, and mouse (Figure 3), indicating similarities between xenobiotic-related genes expressed in chicken fetuses compared with other species. When comparing DEN and NDELA gene expression profiles, DEN more significantly affected oxidative stress and CAR/RXR activation pathways (p =9.83E-05 and 9.72E-0.4, respectively) (Figure 3, Supplementary Table 1), which are known to be altered during carcinogenesis.

Figure 3.

Most significantly impacted pathways in chicken fetal livers exposed to diethylnitrosamine (DEN) (A) and N-nitrosodiethanolamine (NDELA) (B). IPA software was used to analyze and visualize pathway enrichment based on the uploaded gene list of significantly deregulated metabolic genes. See Supplementary Table 1 for details.

Tables 2 and 3 present the list of genes which encode phase I and II metabolic enzymes that were significantly modulated by DEN and NDELA. As evident from the tables, chicken fetal liver possesses a wide range of genes involved in xenobiotic transformation. Overall, exposure to DEN and NDELA in chicken fetal livers appeared to affect a higher number of genes regulating phase I xenobiotic metabolism, compared with that of phase II genes. The major difference in gene expression profiles of DEN and NDELA were the expression of cytochrome genes in phase I (Table 2) and genes responsible for glucuronidation in phase II (Table 3). Specifically, for phase I metabolic cytochrome genes responsible for oxidation, CYB5D2, CYP1A5, and CYP2AB4, were up-regulated by NDELA, while DEN did not significantly alter their expression. Additionally, NADPH oxidase gene, NOX4, was up-regulated by NDELA only, while abhydrolase gene, ABHD2, was up-regulated by DEN only. Over 60% of cytochrome genes detected in chicken livers belonged to either A or B subfamily. DEN and NDELA inhibited more than half of the genes involved in the processes of reduction (68%) and hydrolysis (up to 57%) (Table 2).

Table 2.

List of Genes Regulating Phase I Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/egg of N-Nitrosodiethanolamine (NDELA)

SymbolDescriptionDENNDELA
1. Oxidation
CYTBCytochrome b−510.40−493.15
CYB5ACytochrome b5 type A (microsomal)−353.72−294.36
CYB5R2Cytochrome b5 reductase 2−82.85−69.29
CYP2D6Cytochrome P450, family 2, subfamily D, polypeptide 6−49.43−45.67
CYCSCytochrome c, somatic−48.33−32.25
CYB5BCytochrome b5 outer mitochondrial membrane−43.95−36.53
CYP27A1Cytochrome P450, family 27, subfamily A, polypeptide 1−39.58−25.79
CYP2C18Cytochrome P450, family 2, subfamily C, polypeptide 18−14.98−11.50
CYP2AC1Cytochrome P450, family 2, subfamily AC, polypeptide 1−14.56−15.81
CYP1A1Cytochrome P450, family 1, subfamily A, polypeptide 1−11.74−10.22
CYP3A7Cytochrome P450 A 37−11.09−10.12
CYP1A4Cytochrome P450 1A4−3.96−5.55
CYP4A22Cytochrome P450 family 4 subfamily A member 22−3.91−3.50
CYP4A22Cytochrome P450 family 4 subfamily A member 2−3.87−5.71
CYB5R4Cytochrome b5 reductase 4−3.00−2.67
CYP2U1Cytochrome P450 family 2 subfamily U member 1−1.66−1.34
CYB5D2Cytochrome b5 domain containing 2−1.48−2.41
PORCytochrome P450 oxidoreductase1.671.61
CYP2J22Cytochrome P450, family 2, subfamily J, polypeptide 221.701.69
CYP1A5Cytochrome P4502.052.79
CYP20A1Cytochrome P450, family 20, subfamily A, polypeptide 13.682.87
CYP2W1Cytochrome P450 family 2 subfamily W member 1 3.884.79
CYP2AB4Cytochrome P450, family 2, subfamily AB, polypeptide 44.244.12
CYP17A1Cytochrome P450, family 17, subfamily A, polypeptide 14.984.08
CYBASC3Cytochrome b, ascorbate dependent 35.513.95
CYP2C23ACytochrome P450, family 2, subfamily C, polypeptide 23a12.9211.32
CYP7B1Cytochrome P450, family 7, subfamily B, polypeptide 118.6314.31
CYP1B1Cytochrome P450 family 1 subfamily B member 127.3522.37
CYP21A2Cytochrome P450, family 21, subfamily A, polypeptide 255.9352.22
CYBRD1Cytochrome b reductase 156.5757.05
CYP27C1Cytochrome P450, family 27, subfamily C, polypeptide 1181.57171.64
CYP2J24PCytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene875.17684.93
1.1. Non-microsomal oxidation
ALDH9A1aldehyde dehydrogenase 9 family member A1−275.97−277.75
ALDH4A1Aldehyde dehydrogenase 4 family, member A1−234.74−181.99
ADH1CAlcohol dehydrogenase 1C (class I), gamma polypeptide−169.11−142.19
ADH5Alcohol dehydrogenase 5 (class III), chi polypeptide−155.12−139.00
ALDH3A2Aldehyde dehydrogenase 3 family, member A2−73.81−69.88
ALDH1A1Aldehyde dehydrogenase 1 family, member A1−13.82−14.69
ADH6Alcohol dehydrogenase 6 (class V)−9.13−9.36
ALDH8A1Aldehyde dehydrogenase 8 family, member A1−5.61−5.55
ALDH1A2Aldehyde dehydrogenase 1 family, member A22.542.72
MAOBMonoamine oxidase B13.0212.42
ALDH3B1Aldehyde dehydrogenase20.2318.20
ALDH1A3Aldehyde dehydrogenase 1 family, member A343.7432.59
AOX1Aldehyde oxidase 1408.11406.60
2. Reduction
NDUFS7NADH dehydrogenase (ubiquinone) Fe-S protein 7−982.96−588.23
DHRS7Dehydrogenase/reductase (SDR family) member 7−973.54−914.21
NDUFC2NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2−401.02−387.56
NDUFB6NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6−364.17−260.10
NDUFA8NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8−333.71−304.55
NDUFA4NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4−239.45−231.93
NDUFB10NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10−218.17−297.59
NDUFB3NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3−197.45−146.09
NDUFAB1NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1−176.69−196.89
NDUFA1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1−127.18−90.95
NDUFS5NADH dehydrogenase (ubiquinone) Fe-S protein 5−58.90−55.42
NDUFB9NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9−57.96−48.39
AKR1B1LAldo-keto reductase family 1 member B1-like−24.11−19.85
DHRS13Dehydrogenase/reductase (SDR family) member 13−22.58−16.75
NQO1NAD(P)H dehydrogenase, quinone 1−21.30−17.48
DHRS7BDehydrogenase/reductase (SDR family) member 7B−17.16−14.88
NDUFB1NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1−16.49−18.97
C2ORF56NADH dehydrogenase (ubiquinone) complex I, assembly factor 7−16.30−11.68
NDUFA9NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9−14.33−22.15
NDUFS3NADH dehydrogenase (ubiquinone) Fe-S protein 3−12.14−13.95
NDUFS8NADH dehydrogenase (ubiquinone) Fe-S protein 8−11.19−13.53
NDUFB8NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8−10.82−8.97
NDUFA5NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5−7.04−8.13
AKR1B1LAldo-keto reductase family 1, member B1-like (aldose reductase)−6.67−7.04
NDUFA2NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2−4.97−4.81
NDUFA10NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10−3.92−3.44
NDUFV1NADH dehydrogenase (ubiquinone) flavoprotein 1−2.90−2.41
AKR1B10L1Aldo-keto reductase family 1 member B10-like 1−2.85−3.28
NQO2NAD(P)H dehydrogenase, quinone 2−2.37−2.55
DHRS4Dehydrogenase/reductase (SDR family) member 4−2.37−2.13
NOX4NADPH oxidase 4 (NOX4)2.122.53
NSDHLNAD(P)-dependent steroid dehydrogenase-like2.622.36
AKR1A1Aldo-keto reductase family 1, member A1 (aldehyde reductase)3.412.86
NDUFS1NADH dehydrogenase (ubiquinone) Fe-S protein 16.225.07
NDUFAF1NADH dehydrogenase (ubiquinone) complex I, assembly factor 17.147.26
DHRS12Dehydrogenase/reductase (SDR family) member 127.277.92
DHRS11Dehydrogenase/reductase (SDR family) member 118.595.37
NDUFV3NADH dehydrogenase (ubiquinone) flavoprotein 312.1911.68
NDUFV2NADH dehydrogenase (ubiquinone) flavoprotein 219.4015.46
AKR1B10Aldo-keto reductase family 1, member B10 (aldose reductase)27.1731.24
NDUFAF4NADH dehydrogenase (ubiquinone) complex I, assembly factor 444.8446.20
DHRS3Dehydrogenase/reductase (SDR family) member 379.6480.15
NDUFAF2NADH: ubiquinone oxidoreductase complex assembly factor 281.6070.59
NDUFB2NADH: ubiquinone oxidoreductase subunit B2144.81129.12
3. Hydrolysis
TC382723Gallus, complete−39.13−45.18
EPHX1LEpoxide hydrolase 1-like−27.91−22.21
ABHD13Abhydrolase domain containing 13−24.36−25.14
ABHD5Abhydrolase domain containing 5−6.42−6.43
ABHD11Abhydrolase domain containing 11N/A−7.48
ALPLAlkaline phosphatase, liver/bone/kidney−4.38−4.37
ABHD3Abhydrolase domain containing 3N/A−2.23
EPHX2Epoxide hydrolase 2, cytoplasmic−1.57−1.56
ABHD2Abhydrolase domain containing 21.421.18
ABHD17BFamily with sequence similarity 108, member B11.741.53
ALPPAlkaline phosphatase2.852.35
ABHD6Abhydrolase domain containing 635.2835.76
ABHD10Abhydrolase domain containing 1037.7832.21
ABHD12Abhydrolase domain containing 1284.6699.15
SymbolDescriptionDENNDELA
1. Oxidation
CYTBCytochrome b−510.40−493.15
CYB5ACytochrome b5 type A (microsomal)−353.72−294.36
CYB5R2Cytochrome b5 reductase 2−82.85−69.29
CYP2D6Cytochrome P450, family 2, subfamily D, polypeptide 6−49.43−45.67
CYCSCytochrome c, somatic−48.33−32.25
CYB5BCytochrome b5 outer mitochondrial membrane−43.95−36.53
CYP27A1Cytochrome P450, family 27, subfamily A, polypeptide 1−39.58−25.79
CYP2C18Cytochrome P450, family 2, subfamily C, polypeptide 18−14.98−11.50
CYP2AC1Cytochrome P450, family 2, subfamily AC, polypeptide 1−14.56−15.81
CYP1A1Cytochrome P450, family 1, subfamily A, polypeptide 1−11.74−10.22
CYP3A7Cytochrome P450 A 37−11.09−10.12
CYP1A4Cytochrome P450 1A4−3.96−5.55
CYP4A22Cytochrome P450 family 4 subfamily A member 22−3.91−3.50
CYP4A22Cytochrome P450 family 4 subfamily A member 2−3.87−5.71
CYB5R4Cytochrome b5 reductase 4−3.00−2.67
CYP2U1Cytochrome P450 family 2 subfamily U member 1−1.66−1.34
CYB5D2Cytochrome b5 domain containing 2−1.48−2.41
PORCytochrome P450 oxidoreductase1.671.61
CYP2J22Cytochrome P450, family 2, subfamily J, polypeptide 221.701.69
CYP1A5Cytochrome P4502.052.79
CYP20A1Cytochrome P450, family 20, subfamily A, polypeptide 13.682.87
CYP2W1Cytochrome P450 family 2 subfamily W member 1 3.884.79
CYP2AB4Cytochrome P450, family 2, subfamily AB, polypeptide 44.244.12
CYP17A1Cytochrome P450, family 17, subfamily A, polypeptide 14.984.08
CYBASC3Cytochrome b, ascorbate dependent 35.513.95
CYP2C23ACytochrome P450, family 2, subfamily C, polypeptide 23a12.9211.32
CYP7B1Cytochrome P450, family 7, subfamily B, polypeptide 118.6314.31
CYP1B1Cytochrome P450 family 1 subfamily B member 127.3522.37
CYP21A2Cytochrome P450, family 21, subfamily A, polypeptide 255.9352.22
CYBRD1Cytochrome b reductase 156.5757.05
CYP27C1Cytochrome P450, family 27, subfamily C, polypeptide 1181.57171.64
CYP2J24PCytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene875.17684.93
1.1. Non-microsomal oxidation
ALDH9A1aldehyde dehydrogenase 9 family member A1−275.97−277.75
ALDH4A1Aldehyde dehydrogenase 4 family, member A1−234.74−181.99
ADH1CAlcohol dehydrogenase 1C (class I), gamma polypeptide−169.11−142.19
ADH5Alcohol dehydrogenase 5 (class III), chi polypeptide−155.12−139.00
ALDH3A2Aldehyde dehydrogenase 3 family, member A2−73.81−69.88
ALDH1A1Aldehyde dehydrogenase 1 family, member A1−13.82−14.69
ADH6Alcohol dehydrogenase 6 (class V)−9.13−9.36
ALDH8A1Aldehyde dehydrogenase 8 family, member A1−5.61−5.55
ALDH1A2Aldehyde dehydrogenase 1 family, member A22.542.72
MAOBMonoamine oxidase B13.0212.42
ALDH3B1Aldehyde dehydrogenase20.2318.20
ALDH1A3Aldehyde dehydrogenase 1 family, member A343.7432.59
AOX1Aldehyde oxidase 1408.11406.60
2. Reduction
NDUFS7NADH dehydrogenase (ubiquinone) Fe-S protein 7−982.96−588.23
DHRS7Dehydrogenase/reductase (SDR family) member 7−973.54−914.21
NDUFC2NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2−401.02−387.56
NDUFB6NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6−364.17−260.10
NDUFA8NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8−333.71−304.55
NDUFA4NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4−239.45−231.93
NDUFB10NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10−218.17−297.59
NDUFB3NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3−197.45−146.09
NDUFAB1NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1−176.69−196.89
NDUFA1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1−127.18−90.95
NDUFS5NADH dehydrogenase (ubiquinone) Fe-S protein 5−58.90−55.42
NDUFB9NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9−57.96−48.39
AKR1B1LAldo-keto reductase family 1 member B1-like−24.11−19.85
DHRS13Dehydrogenase/reductase (SDR family) member 13−22.58−16.75
NQO1NAD(P)H dehydrogenase, quinone 1−21.30−17.48
DHRS7BDehydrogenase/reductase (SDR family) member 7B−17.16−14.88
NDUFB1NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1−16.49−18.97
C2ORF56NADH dehydrogenase (ubiquinone) complex I, assembly factor 7−16.30−11.68
NDUFA9NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9−14.33−22.15
NDUFS3NADH dehydrogenase (ubiquinone) Fe-S protein 3−12.14−13.95
NDUFS8NADH dehydrogenase (ubiquinone) Fe-S protein 8−11.19−13.53
NDUFB8NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8−10.82−8.97
NDUFA5NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5−7.04−8.13
AKR1B1LAldo-keto reductase family 1, member B1-like (aldose reductase)−6.67−7.04
NDUFA2NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2−4.97−4.81
NDUFA10NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10−3.92−3.44
NDUFV1NADH dehydrogenase (ubiquinone) flavoprotein 1−2.90−2.41
AKR1B10L1Aldo-keto reductase family 1 member B10-like 1−2.85−3.28
NQO2NAD(P)H dehydrogenase, quinone 2−2.37−2.55
DHRS4Dehydrogenase/reductase (SDR family) member 4−2.37−2.13
NOX4NADPH oxidase 4 (NOX4)2.122.53
NSDHLNAD(P)-dependent steroid dehydrogenase-like2.622.36
AKR1A1Aldo-keto reductase family 1, member A1 (aldehyde reductase)3.412.86
NDUFS1NADH dehydrogenase (ubiquinone) Fe-S protein 16.225.07
NDUFAF1NADH dehydrogenase (ubiquinone) complex I, assembly factor 17.147.26
DHRS12Dehydrogenase/reductase (SDR family) member 127.277.92
DHRS11Dehydrogenase/reductase (SDR family) member 118.595.37
NDUFV3NADH dehydrogenase (ubiquinone) flavoprotein 312.1911.68
NDUFV2NADH dehydrogenase (ubiquinone) flavoprotein 219.4015.46
AKR1B10Aldo-keto reductase family 1, member B10 (aldose reductase)27.1731.24
NDUFAF4NADH dehydrogenase (ubiquinone) complex I, assembly factor 444.8446.20
DHRS3Dehydrogenase/reductase (SDR family) member 379.6480.15
NDUFAF2NADH: ubiquinone oxidoreductase complex assembly factor 281.6070.59
NDUFB2NADH: ubiquinone oxidoreductase subunit B2144.81129.12
3. Hydrolysis
TC382723Gallus, complete−39.13−45.18
EPHX1LEpoxide hydrolase 1-like−27.91−22.21
ABHD13Abhydrolase domain containing 13−24.36−25.14
ABHD5Abhydrolase domain containing 5−6.42−6.43
ABHD11Abhydrolase domain containing 11N/A−7.48
ALPLAlkaline phosphatase, liver/bone/kidney−4.38−4.37
ABHD3Abhydrolase domain containing 3N/A−2.23
EPHX2Epoxide hydrolase 2, cytoplasmic−1.57−1.56
ABHD2Abhydrolase domain containing 21.421.18
ABHD17BFamily with sequence similarity 108, member B11.741.53
ALPPAlkaline phosphatase2.852.35
ABHD6Abhydrolase domain containing 635.2835.76
ABHD10Abhydrolase domain containing 1037.7832.21
ABHD12Abhydrolase domain containing 1284.6699.15

Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.

Table 2.

List of Genes Regulating Phase I Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/egg of N-Nitrosodiethanolamine (NDELA)

SymbolDescriptionDENNDELA
1. Oxidation
CYTBCytochrome b−510.40−493.15
CYB5ACytochrome b5 type A (microsomal)−353.72−294.36
CYB5R2Cytochrome b5 reductase 2−82.85−69.29
CYP2D6Cytochrome P450, family 2, subfamily D, polypeptide 6−49.43−45.67
CYCSCytochrome c, somatic−48.33−32.25
CYB5BCytochrome b5 outer mitochondrial membrane−43.95−36.53
CYP27A1Cytochrome P450, family 27, subfamily A, polypeptide 1−39.58−25.79
CYP2C18Cytochrome P450, family 2, subfamily C, polypeptide 18−14.98−11.50
CYP2AC1Cytochrome P450, family 2, subfamily AC, polypeptide 1−14.56−15.81
CYP1A1Cytochrome P450, family 1, subfamily A, polypeptide 1−11.74−10.22
CYP3A7Cytochrome P450 A 37−11.09−10.12
CYP1A4Cytochrome P450 1A4−3.96−5.55
CYP4A22Cytochrome P450 family 4 subfamily A member 22−3.91−3.50
CYP4A22Cytochrome P450 family 4 subfamily A member 2−3.87−5.71
CYB5R4Cytochrome b5 reductase 4−3.00−2.67
CYP2U1Cytochrome P450 family 2 subfamily U member 1−1.66−1.34
CYB5D2Cytochrome b5 domain containing 2−1.48−2.41
PORCytochrome P450 oxidoreductase1.671.61
CYP2J22Cytochrome P450, family 2, subfamily J, polypeptide 221.701.69
CYP1A5Cytochrome P4502.052.79
CYP20A1Cytochrome P450, family 20, subfamily A, polypeptide 13.682.87
CYP2W1Cytochrome P450 family 2 subfamily W member 1 3.884.79
CYP2AB4Cytochrome P450, family 2, subfamily AB, polypeptide 44.244.12
CYP17A1Cytochrome P450, family 17, subfamily A, polypeptide 14.984.08
CYBASC3Cytochrome b, ascorbate dependent 35.513.95
CYP2C23ACytochrome P450, family 2, subfamily C, polypeptide 23a12.9211.32
CYP7B1Cytochrome P450, family 7, subfamily B, polypeptide 118.6314.31
CYP1B1Cytochrome P450 family 1 subfamily B member 127.3522.37
CYP21A2Cytochrome P450, family 21, subfamily A, polypeptide 255.9352.22
CYBRD1Cytochrome b reductase 156.5757.05
CYP27C1Cytochrome P450, family 27, subfamily C, polypeptide 1181.57171.64
CYP2J24PCytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene875.17684.93
1.1. Non-microsomal oxidation
ALDH9A1aldehyde dehydrogenase 9 family member A1−275.97−277.75
ALDH4A1Aldehyde dehydrogenase 4 family, member A1−234.74−181.99
ADH1CAlcohol dehydrogenase 1C (class I), gamma polypeptide−169.11−142.19
ADH5Alcohol dehydrogenase 5 (class III), chi polypeptide−155.12−139.00
ALDH3A2Aldehyde dehydrogenase 3 family, member A2−73.81−69.88
ALDH1A1Aldehyde dehydrogenase 1 family, member A1−13.82−14.69
ADH6Alcohol dehydrogenase 6 (class V)−9.13−9.36
ALDH8A1Aldehyde dehydrogenase 8 family, member A1−5.61−5.55
ALDH1A2Aldehyde dehydrogenase 1 family, member A22.542.72
MAOBMonoamine oxidase B13.0212.42
ALDH3B1Aldehyde dehydrogenase20.2318.20
ALDH1A3Aldehyde dehydrogenase 1 family, member A343.7432.59
AOX1Aldehyde oxidase 1408.11406.60
2. Reduction
NDUFS7NADH dehydrogenase (ubiquinone) Fe-S protein 7−982.96−588.23
DHRS7Dehydrogenase/reductase (SDR family) member 7−973.54−914.21
NDUFC2NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2−401.02−387.56
NDUFB6NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6−364.17−260.10
NDUFA8NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8−333.71−304.55
NDUFA4NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4−239.45−231.93
NDUFB10NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10−218.17−297.59
NDUFB3NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3−197.45−146.09
NDUFAB1NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1−176.69−196.89
NDUFA1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1−127.18−90.95
NDUFS5NADH dehydrogenase (ubiquinone) Fe-S protein 5−58.90−55.42
NDUFB9NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9−57.96−48.39
AKR1B1LAldo-keto reductase family 1 member B1-like−24.11−19.85
DHRS13Dehydrogenase/reductase (SDR family) member 13−22.58−16.75
NQO1NAD(P)H dehydrogenase, quinone 1−21.30−17.48
DHRS7BDehydrogenase/reductase (SDR family) member 7B−17.16−14.88
NDUFB1NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1−16.49−18.97
C2ORF56NADH dehydrogenase (ubiquinone) complex I, assembly factor 7−16.30−11.68
NDUFA9NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9−14.33−22.15
NDUFS3NADH dehydrogenase (ubiquinone) Fe-S protein 3−12.14−13.95
NDUFS8NADH dehydrogenase (ubiquinone) Fe-S protein 8−11.19−13.53
NDUFB8NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8−10.82−8.97
NDUFA5NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5−7.04−8.13
AKR1B1LAldo-keto reductase family 1, member B1-like (aldose reductase)−6.67−7.04
NDUFA2NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2−4.97−4.81
NDUFA10NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10−3.92−3.44
NDUFV1NADH dehydrogenase (ubiquinone) flavoprotein 1−2.90−2.41
AKR1B10L1Aldo-keto reductase family 1 member B10-like 1−2.85−3.28
NQO2NAD(P)H dehydrogenase, quinone 2−2.37−2.55
DHRS4Dehydrogenase/reductase (SDR family) member 4−2.37−2.13
NOX4NADPH oxidase 4 (NOX4)2.122.53
NSDHLNAD(P)-dependent steroid dehydrogenase-like2.622.36
AKR1A1Aldo-keto reductase family 1, member A1 (aldehyde reductase)3.412.86
NDUFS1NADH dehydrogenase (ubiquinone) Fe-S protein 16.225.07
NDUFAF1NADH dehydrogenase (ubiquinone) complex I, assembly factor 17.147.26
DHRS12Dehydrogenase/reductase (SDR family) member 127.277.92
DHRS11Dehydrogenase/reductase (SDR family) member 118.595.37
NDUFV3NADH dehydrogenase (ubiquinone) flavoprotein 312.1911.68
NDUFV2NADH dehydrogenase (ubiquinone) flavoprotein 219.4015.46
AKR1B10Aldo-keto reductase family 1, member B10 (aldose reductase)27.1731.24
NDUFAF4NADH dehydrogenase (ubiquinone) complex I, assembly factor 444.8446.20
DHRS3Dehydrogenase/reductase (SDR family) member 379.6480.15
NDUFAF2NADH: ubiquinone oxidoreductase complex assembly factor 281.6070.59
NDUFB2NADH: ubiquinone oxidoreductase subunit B2144.81129.12
3. Hydrolysis
TC382723Gallus, complete−39.13−45.18
EPHX1LEpoxide hydrolase 1-like−27.91−22.21
ABHD13Abhydrolase domain containing 13−24.36−25.14
ABHD5Abhydrolase domain containing 5−6.42−6.43
ABHD11Abhydrolase domain containing 11N/A−7.48
ALPLAlkaline phosphatase, liver/bone/kidney−4.38−4.37
ABHD3Abhydrolase domain containing 3N/A−2.23
EPHX2Epoxide hydrolase 2, cytoplasmic−1.57−1.56
ABHD2Abhydrolase domain containing 21.421.18
ABHD17BFamily with sequence similarity 108, member B11.741.53
ALPPAlkaline phosphatase2.852.35
ABHD6Abhydrolase domain containing 635.2835.76
ABHD10Abhydrolase domain containing 1037.7832.21
ABHD12Abhydrolase domain containing 1284.6699.15
SymbolDescriptionDENNDELA
1. Oxidation
CYTBCytochrome b−510.40−493.15
CYB5ACytochrome b5 type A (microsomal)−353.72−294.36
CYB5R2Cytochrome b5 reductase 2−82.85−69.29
CYP2D6Cytochrome P450, family 2, subfamily D, polypeptide 6−49.43−45.67
CYCSCytochrome c, somatic−48.33−32.25
CYB5BCytochrome b5 outer mitochondrial membrane−43.95−36.53
CYP27A1Cytochrome P450, family 27, subfamily A, polypeptide 1−39.58−25.79
CYP2C18Cytochrome P450, family 2, subfamily C, polypeptide 18−14.98−11.50
CYP2AC1Cytochrome P450, family 2, subfamily AC, polypeptide 1−14.56−15.81
CYP1A1Cytochrome P450, family 1, subfamily A, polypeptide 1−11.74−10.22
CYP3A7Cytochrome P450 A 37−11.09−10.12
CYP1A4Cytochrome P450 1A4−3.96−5.55
CYP4A22Cytochrome P450 family 4 subfamily A member 22−3.91−3.50
CYP4A22Cytochrome P450 family 4 subfamily A member 2−3.87−5.71
CYB5R4Cytochrome b5 reductase 4−3.00−2.67
CYP2U1Cytochrome P450 family 2 subfamily U member 1−1.66−1.34
CYB5D2Cytochrome b5 domain containing 2−1.48−2.41
PORCytochrome P450 oxidoreductase1.671.61
CYP2J22Cytochrome P450, family 2, subfamily J, polypeptide 221.701.69
CYP1A5Cytochrome P4502.052.79
CYP20A1Cytochrome P450, family 20, subfamily A, polypeptide 13.682.87
CYP2W1Cytochrome P450 family 2 subfamily W member 1 3.884.79
CYP2AB4Cytochrome P450, family 2, subfamily AB, polypeptide 44.244.12
CYP17A1Cytochrome P450, family 17, subfamily A, polypeptide 14.984.08
CYBASC3Cytochrome b, ascorbate dependent 35.513.95
CYP2C23ACytochrome P450, family 2, subfamily C, polypeptide 23a12.9211.32
CYP7B1Cytochrome P450, family 7, subfamily B, polypeptide 118.6314.31
CYP1B1Cytochrome P450 family 1 subfamily B member 127.3522.37
CYP21A2Cytochrome P450, family 21, subfamily A, polypeptide 255.9352.22
CYBRD1Cytochrome b reductase 156.5757.05
CYP27C1Cytochrome P450, family 27, subfamily C, polypeptide 1181.57171.64
CYP2J24PCytochrome P450, family 2, subfamily J, polypeptide 24, pseudogene875.17684.93
1.1. Non-microsomal oxidation
ALDH9A1aldehyde dehydrogenase 9 family member A1−275.97−277.75
ALDH4A1Aldehyde dehydrogenase 4 family, member A1−234.74−181.99
ADH1CAlcohol dehydrogenase 1C (class I), gamma polypeptide−169.11−142.19
ADH5Alcohol dehydrogenase 5 (class III), chi polypeptide−155.12−139.00
ALDH3A2Aldehyde dehydrogenase 3 family, member A2−73.81−69.88
ALDH1A1Aldehyde dehydrogenase 1 family, member A1−13.82−14.69
ADH6Alcohol dehydrogenase 6 (class V)−9.13−9.36
ALDH8A1Aldehyde dehydrogenase 8 family, member A1−5.61−5.55
ALDH1A2Aldehyde dehydrogenase 1 family, member A22.542.72
MAOBMonoamine oxidase B13.0212.42
ALDH3B1Aldehyde dehydrogenase20.2318.20
ALDH1A3Aldehyde dehydrogenase 1 family, member A343.7432.59
AOX1Aldehyde oxidase 1408.11406.60
2. Reduction
NDUFS7NADH dehydrogenase (ubiquinone) Fe-S protein 7−982.96−588.23
DHRS7Dehydrogenase/reductase (SDR family) member 7−973.54−914.21
NDUFC2NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2−401.02−387.56
NDUFB6NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6−364.17−260.10
NDUFA8NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8−333.71−304.55
NDUFA4NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4−239.45−231.93
NDUFB10NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10−218.17−297.59
NDUFB3NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3−197.45−146.09
NDUFAB1NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1−176.69−196.89
NDUFA1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1−127.18−90.95
NDUFS5NADH dehydrogenase (ubiquinone) Fe-S protein 5−58.90−55.42
NDUFB9NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9−57.96−48.39
AKR1B1LAldo-keto reductase family 1 member B1-like−24.11−19.85
DHRS13Dehydrogenase/reductase (SDR family) member 13−22.58−16.75
NQO1NAD(P)H dehydrogenase, quinone 1−21.30−17.48
DHRS7BDehydrogenase/reductase (SDR family) member 7B−17.16−14.88
NDUFB1NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1−16.49−18.97
C2ORF56NADH dehydrogenase (ubiquinone) complex I, assembly factor 7−16.30−11.68
NDUFA9NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9−14.33−22.15
NDUFS3NADH dehydrogenase (ubiquinone) Fe-S protein 3−12.14−13.95
NDUFS8NADH dehydrogenase (ubiquinone) Fe-S protein 8−11.19−13.53
NDUFB8NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8−10.82−8.97
NDUFA5NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5−7.04−8.13
AKR1B1LAldo-keto reductase family 1, member B1-like (aldose reductase)−6.67−7.04
NDUFA2NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2−4.97−4.81
NDUFA10NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10−3.92−3.44
NDUFV1NADH dehydrogenase (ubiquinone) flavoprotein 1−2.90−2.41
AKR1B10L1Aldo-keto reductase family 1 member B10-like 1−2.85−3.28
NQO2NAD(P)H dehydrogenase, quinone 2−2.37−2.55
DHRS4Dehydrogenase/reductase (SDR family) member 4−2.37−2.13
NOX4NADPH oxidase 4 (NOX4)2.122.53
NSDHLNAD(P)-dependent steroid dehydrogenase-like2.622.36
AKR1A1Aldo-keto reductase family 1, member A1 (aldehyde reductase)3.412.86
NDUFS1NADH dehydrogenase (ubiquinone) Fe-S protein 16.225.07
NDUFAF1NADH dehydrogenase (ubiquinone) complex I, assembly factor 17.147.26
DHRS12Dehydrogenase/reductase (SDR family) member 127.277.92
DHRS11Dehydrogenase/reductase (SDR family) member 118.595.37
NDUFV3NADH dehydrogenase (ubiquinone) flavoprotein 312.1911.68
NDUFV2NADH dehydrogenase (ubiquinone) flavoprotein 219.4015.46
AKR1B10Aldo-keto reductase family 1, member B10 (aldose reductase)27.1731.24
NDUFAF4NADH dehydrogenase (ubiquinone) complex I, assembly factor 444.8446.20
DHRS3Dehydrogenase/reductase (SDR family) member 379.6480.15
NDUFAF2NADH: ubiquinone oxidoreductase complex assembly factor 281.6070.59
NDUFB2NADH: ubiquinone oxidoreductase subunit B2144.81129.12
3. Hydrolysis
TC382723Gallus, complete−39.13−45.18
EPHX1LEpoxide hydrolase 1-like−27.91−22.21
ABHD13Abhydrolase domain containing 13−24.36−25.14
ABHD5Abhydrolase domain containing 5−6.42−6.43
ABHD11Abhydrolase domain containing 11N/A−7.48
ALPLAlkaline phosphatase, liver/bone/kidney−4.38−4.37
ABHD3Abhydrolase domain containing 3N/A−2.23
EPHX2Epoxide hydrolase 2, cytoplasmic−1.57−1.56
ABHD2Abhydrolase domain containing 21.421.18
ABHD17BFamily with sequence similarity 108, member B11.741.53
ALPPAlkaline phosphatase2.852.35
ABHD6Abhydrolase domain containing 635.2835.76
ABHD10Abhydrolase domain containing 1037.7832.21
ABHD12Abhydrolase domain containing 1284.6699.15

Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.

Table 3.

List of Genes Regulating Phase II Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/Egg N-Nitrosodiethanolamine (NDELA)

SymbolDescriptionDENNDELA
1. Methylation
METTL7AMethyltransferase like 7AN/A−125.47
METTL21DMethyltransferase valosin containing protein lysine (K)−66.97−50.59
METTL5Methyltransferase like 5−8.38−8.11
METTL10Methyltransferase like 10−8.34−6.79
METTL9Methyltransferase like 9−4.62−4.01
METTL21AMethyltransferase like 21A−4.09−4.42
METTL11AMethyltransferase like 11A−4.02−3.26
METTL15Methyltransferase like 15−2.96−2.47
METTL6Methyltransferase like 61.111.52
METTL2AMethyltransferase like 2A3.192.82
METTL18Methyltransferase like 184.746.11
METTL13Methyltransferase like 1319.3920.18
METTL22Methyltransferase-like protein 2223.2127.48
2. Sulfation
SULT1B1Sulfotransferase family, cytosolic, 1B, member 1−59.58−75.50
SULT1E1Sulfotransferase family 1E, estrogen-preferring, member 1−33.02−25.56
SULTSulfotransferase−8.43−8.91
NDST2N-Deacetylase and N-sulfotransferase 2−2.45−2.33
SULT6B1LSulfotransferase family, cytosolic, 6B, member 1-like−1.62−1.31
SULT1C3Sulfotransferase family, cytosolic, 1C, member 3N/A−459.77
NDST1N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 11.392.05
SULT6B1Sulfotransferase family, cytosolic, 6B, member 112.3014.69
NDST3N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 331.4528.11
3. Conjugation with glutathione
GPX1Glutathione peroxidase 1−1147.61N/A
GSTZ1Glutathione S-transferase zeta 1−145.76−219.59
GSTAL3Glutathione S-transferase class-alpha-like 3−129.59−111.58
MGST3MICROSOMAL glutathione S-transferase 3−71.22−78.12
GPX4Phospholipid hydroperoxide glutathione peroxidase−69.71−96.71
GSTM2Glutathione S-transferase mu 2 (muscle)−48.89−40.49
GSRGlutathione reductase−40.95−30.70
GSTAGlutathione S-transferase class-alpha−27.26−65.28
GSTO1Glutathione S-transferase omega 1−23.77−17.78
GSTA3Glutathione S-transferase alpha 3−6.26−5.31
GPX3Glutathione peroxidase 3−2.81−2.01
GSTCDGlutathione S-transferase, C-terminal domain containing1.221.65
MGST2Microsomal glutathione S-transferase 24.605.85
GSSGlutathione synthetase5.894.63
4. Acetylation
NAT8BN-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)−20.66−16.13
NATN-Acetyltransferase, liver isozyme−11.58−9.91
NAT8LN-Acetyltransferase 8-like (GCN5-related, putative)−5.00−4.24
NAT9N-Acetyltransferase 9 (GCN5-related, putative)−4.25−4.74
5. Glucuronidation
GALNT7UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7−37.27−30.72
UGDHUDP-glucose 6-dehydrogenase (UGDH)−32.39−23.46
B4GALT2UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2−23.97−17.33
UGP2UDP-glucose pyrophosphorylase 2 (UGP2)−7.22−8.96
B4GALT4UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4−6.93−8.29
UXS1UDP-glucuronate decarboxylase 1−5.99−5.15
B4GALT7Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)−5.74−6.21
B3GNT2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2−4.74−4.76
GALEUDP-galactose-4-epimerase−1.24−1.58
B3GNTL1UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 11.471.57
B3GALT2UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 21.501.80
B4GALT5UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 51.561.94
GALNTL4UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 41.792.23
UGGT1UDP-glucose glycoprotein glucosyltransferase 12.341.78
UGT2A3UDP glucuronosyltransferase 2 family, polypeptide A12.473.25
B4GALT1UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 12.752.72
B3GNT5UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 53.193.12
UGT8UDP-galactose ceramide galactosyltransferase3.202.94
UGCGUDP-glucose ceramide glucosyltransferase3.283.22
GALNT11UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 113.412.37
B3GNT7UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 74.304.49
B3GAT1beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P)4.802.61
GALNT6UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 65.386.71
GALNT12UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 125.834.02
UGGT2UDP-glucose glycoprotein glucosyltransferase 26.386.07
GALNT10UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 107.236.18
B3GALT6UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 610.2112.24
B3GALTLbeta 1, 3-galactosyltransferase-like10.419.65
GALNTL1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1614.7412.28
GALNT1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 131.0237.33
GALNTL6polypeptide N-acetylgalactosaminyltransferase-like 638.4130.19
GALNT13UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1339.0636.56
B3GNT9UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 953.9846.67
B3GNTL2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 267.86143.99
GALNT14UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14115.30111.64
SymbolDescriptionDENNDELA
1. Methylation
METTL7AMethyltransferase like 7AN/A−125.47
METTL21DMethyltransferase valosin containing protein lysine (K)−66.97−50.59
METTL5Methyltransferase like 5−8.38−8.11
METTL10Methyltransferase like 10−8.34−6.79
METTL9Methyltransferase like 9−4.62−4.01
METTL21AMethyltransferase like 21A−4.09−4.42
METTL11AMethyltransferase like 11A−4.02−3.26
METTL15Methyltransferase like 15−2.96−2.47
METTL6Methyltransferase like 61.111.52
METTL2AMethyltransferase like 2A3.192.82
METTL18Methyltransferase like 184.746.11
METTL13Methyltransferase like 1319.3920.18
METTL22Methyltransferase-like protein 2223.2127.48
2. Sulfation
SULT1B1Sulfotransferase family, cytosolic, 1B, member 1−59.58−75.50
SULT1E1Sulfotransferase family 1E, estrogen-preferring, member 1−33.02−25.56
SULTSulfotransferase−8.43−8.91
NDST2N-Deacetylase and N-sulfotransferase 2−2.45−2.33
SULT6B1LSulfotransferase family, cytosolic, 6B, member 1-like−1.62−1.31
SULT1C3Sulfotransferase family, cytosolic, 1C, member 3N/A−459.77
NDST1N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 11.392.05
SULT6B1Sulfotransferase family, cytosolic, 6B, member 112.3014.69
NDST3N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 331.4528.11
3. Conjugation with glutathione
GPX1Glutathione peroxidase 1−1147.61N/A
GSTZ1Glutathione S-transferase zeta 1−145.76−219.59
GSTAL3Glutathione S-transferase class-alpha-like 3−129.59−111.58
MGST3MICROSOMAL glutathione S-transferase 3−71.22−78.12
GPX4Phospholipid hydroperoxide glutathione peroxidase−69.71−96.71
GSTM2Glutathione S-transferase mu 2 (muscle)−48.89−40.49
GSRGlutathione reductase−40.95−30.70
GSTAGlutathione S-transferase class-alpha−27.26−65.28
GSTO1Glutathione S-transferase omega 1−23.77−17.78
GSTA3Glutathione S-transferase alpha 3−6.26−5.31
GPX3Glutathione peroxidase 3−2.81−2.01
GSTCDGlutathione S-transferase, C-terminal domain containing1.221.65
MGST2Microsomal glutathione S-transferase 24.605.85
GSSGlutathione synthetase5.894.63
4. Acetylation
NAT8BN-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)−20.66−16.13
NATN-Acetyltransferase, liver isozyme−11.58−9.91
NAT8LN-Acetyltransferase 8-like (GCN5-related, putative)−5.00−4.24
NAT9N-Acetyltransferase 9 (GCN5-related, putative)−4.25−4.74
5. Glucuronidation
GALNT7UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7−37.27−30.72
UGDHUDP-glucose 6-dehydrogenase (UGDH)−32.39−23.46
B4GALT2UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2−23.97−17.33
UGP2UDP-glucose pyrophosphorylase 2 (UGP2)−7.22−8.96
B4GALT4UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4−6.93−8.29
UXS1UDP-glucuronate decarboxylase 1−5.99−5.15
B4GALT7Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)−5.74−6.21
B3GNT2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2−4.74−4.76
GALEUDP-galactose-4-epimerase−1.24−1.58
B3GNTL1UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 11.471.57
B3GALT2UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 21.501.80
B4GALT5UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 51.561.94
GALNTL4UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 41.792.23
UGGT1UDP-glucose glycoprotein glucosyltransferase 12.341.78
UGT2A3UDP glucuronosyltransferase 2 family, polypeptide A12.473.25
B4GALT1UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 12.752.72
B3GNT5UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 53.193.12
UGT8UDP-galactose ceramide galactosyltransferase3.202.94
UGCGUDP-glucose ceramide glucosyltransferase3.283.22
GALNT11UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 113.412.37
B3GNT7UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 74.304.49
B3GAT1beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P)4.802.61
GALNT6UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 65.386.71
GALNT12UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 125.834.02
UGGT2UDP-glucose glycoprotein glucosyltransferase 26.386.07
GALNT10UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 107.236.18
B3GALT6UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 610.2112.24
B3GALTLbeta 1, 3-galactosyltransferase-like10.419.65
GALNTL1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1614.7412.28
GALNT1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 131.0237.33
GALNTL6polypeptide N-acetylgalactosaminyltransferase-like 638.4130.19
GALNT13UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1339.0636.56
B3GNT9UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 953.9846.67
B3GNTL2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 267.86143.99
GALNT14UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14115.30111.64

Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.

Table 3.

List of Genes Regulating Phase II Enzymes Involved in Endobiotic/Xenobiotic Metabolism in chicken fetal liver Significantly Modulated by Injections With 2 mg/Egg of Diethylnitrosamine (DEN) and 4 mg/Egg N-Nitrosodiethanolamine (NDELA)

SymbolDescriptionDENNDELA
1. Methylation
METTL7AMethyltransferase like 7AN/A−125.47
METTL21DMethyltransferase valosin containing protein lysine (K)−66.97−50.59
METTL5Methyltransferase like 5−8.38−8.11
METTL10Methyltransferase like 10−8.34−6.79
METTL9Methyltransferase like 9−4.62−4.01
METTL21AMethyltransferase like 21A−4.09−4.42
METTL11AMethyltransferase like 11A−4.02−3.26
METTL15Methyltransferase like 15−2.96−2.47
METTL6Methyltransferase like 61.111.52
METTL2AMethyltransferase like 2A3.192.82
METTL18Methyltransferase like 184.746.11
METTL13Methyltransferase like 1319.3920.18
METTL22Methyltransferase-like protein 2223.2127.48
2. Sulfation
SULT1B1Sulfotransferase family, cytosolic, 1B, member 1−59.58−75.50
SULT1E1Sulfotransferase family 1E, estrogen-preferring, member 1−33.02−25.56
SULTSulfotransferase−8.43−8.91
NDST2N-Deacetylase and N-sulfotransferase 2−2.45−2.33
SULT6B1LSulfotransferase family, cytosolic, 6B, member 1-like−1.62−1.31
SULT1C3Sulfotransferase family, cytosolic, 1C, member 3N/A−459.77
NDST1N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 11.392.05
SULT6B1Sulfotransferase family, cytosolic, 6B, member 112.3014.69
NDST3N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 331.4528.11
3. Conjugation with glutathione
GPX1Glutathione peroxidase 1−1147.61N/A
GSTZ1Glutathione S-transferase zeta 1−145.76−219.59
GSTAL3Glutathione S-transferase class-alpha-like 3−129.59−111.58
MGST3MICROSOMAL glutathione S-transferase 3−71.22−78.12
GPX4Phospholipid hydroperoxide glutathione peroxidase−69.71−96.71
GSTM2Glutathione S-transferase mu 2 (muscle)−48.89−40.49
GSRGlutathione reductase−40.95−30.70
GSTAGlutathione S-transferase class-alpha−27.26−65.28
GSTO1Glutathione S-transferase omega 1−23.77−17.78
GSTA3Glutathione S-transferase alpha 3−6.26−5.31
GPX3Glutathione peroxidase 3−2.81−2.01
GSTCDGlutathione S-transferase, C-terminal domain containing1.221.65
MGST2Microsomal glutathione S-transferase 24.605.85
GSSGlutathione synthetase5.894.63
4. Acetylation
NAT8BN-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)−20.66−16.13
NATN-Acetyltransferase, liver isozyme−11.58−9.91
NAT8LN-Acetyltransferase 8-like (GCN5-related, putative)−5.00−4.24
NAT9N-Acetyltransferase 9 (GCN5-related, putative)−4.25−4.74
5. Glucuronidation
GALNT7UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7−37.27−30.72
UGDHUDP-glucose 6-dehydrogenase (UGDH)−32.39−23.46
B4GALT2UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2−23.97−17.33
UGP2UDP-glucose pyrophosphorylase 2 (UGP2)−7.22−8.96
B4GALT4UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4−6.93−8.29
UXS1UDP-glucuronate decarboxylase 1−5.99−5.15
B4GALT7Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)−5.74−6.21
B3GNT2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2−4.74−4.76
GALEUDP-galactose-4-epimerase−1.24−1.58
B3GNTL1UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 11.471.57
B3GALT2UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 21.501.80
B4GALT5UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 51.561.94
GALNTL4UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 41.792.23
UGGT1UDP-glucose glycoprotein glucosyltransferase 12.341.78
UGT2A3UDP glucuronosyltransferase 2 family, polypeptide A12.473.25
B4GALT1UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 12.752.72
B3GNT5UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 53.193.12
UGT8UDP-galactose ceramide galactosyltransferase3.202.94
UGCGUDP-glucose ceramide glucosyltransferase3.283.22
GALNT11UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 113.412.37
B3GNT7UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 74.304.49
B3GAT1beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P)4.802.61
GALNT6UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 65.386.71
GALNT12UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 125.834.02
UGGT2UDP-glucose glycoprotein glucosyltransferase 26.386.07
GALNT10UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 107.236.18
B3GALT6UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 610.2112.24
B3GALTLbeta 1, 3-galactosyltransferase-like10.419.65
GALNTL1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1614.7412.28
GALNT1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 131.0237.33
GALNTL6polypeptide N-acetylgalactosaminyltransferase-like 638.4130.19
GALNT13UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1339.0636.56
B3GNT9UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 953.9846.67
B3GNTL2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 267.86143.99
GALNT14UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14115.30111.64
SymbolDescriptionDENNDELA
1. Methylation
METTL7AMethyltransferase like 7AN/A−125.47
METTL21DMethyltransferase valosin containing protein lysine (K)−66.97−50.59
METTL5Methyltransferase like 5−8.38−8.11
METTL10Methyltransferase like 10−8.34−6.79
METTL9Methyltransferase like 9−4.62−4.01
METTL21AMethyltransferase like 21A−4.09−4.42
METTL11AMethyltransferase like 11A−4.02−3.26
METTL15Methyltransferase like 15−2.96−2.47
METTL6Methyltransferase like 61.111.52
METTL2AMethyltransferase like 2A3.192.82
METTL18Methyltransferase like 184.746.11
METTL13Methyltransferase like 1319.3920.18
METTL22Methyltransferase-like protein 2223.2127.48
2. Sulfation
SULT1B1Sulfotransferase family, cytosolic, 1B, member 1−59.58−75.50
SULT1E1Sulfotransferase family 1E, estrogen-preferring, member 1−33.02−25.56
SULTSulfotransferase−8.43−8.91
NDST2N-Deacetylase and N-sulfotransferase 2−2.45−2.33
SULT6B1LSulfotransferase family, cytosolic, 6B, member 1-like−1.62−1.31
SULT1C3Sulfotransferase family, cytosolic, 1C, member 3N/A−459.77
NDST1N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 11.392.05
SULT6B1Sulfotransferase family, cytosolic, 6B, member 112.3014.69
NDST3N-Deacetylase/N-sulfotransferase (heparan glucosaminyl) 331.4528.11
3. Conjugation with glutathione
GPX1Glutathione peroxidase 1−1147.61N/A
GSTZ1Glutathione S-transferase zeta 1−145.76−219.59
GSTAL3Glutathione S-transferase class-alpha-like 3−129.59−111.58
MGST3MICROSOMAL glutathione S-transferase 3−71.22−78.12
GPX4Phospholipid hydroperoxide glutathione peroxidase−69.71−96.71
GSTM2Glutathione S-transferase mu 2 (muscle)−48.89−40.49
GSRGlutathione reductase−40.95−30.70
GSTAGlutathione S-transferase class-alpha−27.26−65.28
GSTO1Glutathione S-transferase omega 1−23.77−17.78
GSTA3Glutathione S-transferase alpha 3−6.26−5.31
GPX3Glutathione peroxidase 3−2.81−2.01
GSTCDGlutathione S-transferase, C-terminal domain containing1.221.65
MGST2Microsomal glutathione S-transferase 24.605.85
GSSGlutathione synthetase5.894.63
4. Acetylation
NAT8BN-Acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)−20.66−16.13
NATN-Acetyltransferase, liver isozyme−11.58−9.91
NAT8LN-Acetyltransferase 8-like (GCN5-related, putative)−5.00−4.24
NAT9N-Acetyltransferase 9 (GCN5-related, putative)−4.25−4.74
5. Glucuronidation
GALNT7UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7−37.27−30.72
UGDHUDP-glucose 6-dehydrogenase (UGDH)−32.39−23.46
B4GALT2UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 2−23.97−17.33
UGP2UDP-glucose pyrophosphorylase 2 (UGP2)−7.22−8.96
B4GALT4UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 4−6.93−8.29
UXS1UDP-glucuronate decarboxylase 1−5.99−5.15
B4GALT7Xylosylprotein beta 1, 4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)−5.74−6.21
B3GNT2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 2−4.74−4.76
GALEUDP-galactose-4-epimerase−1.24−1.58
B3GNTL1UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 11.471.57
B3GALT2UDP-Gal: betaGlcNAc beta 1, 3-galactosyltransferase, polypeptide 21.501.80
B4GALT5UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 51.561.94
GALNTL4UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase-like 41.792.23
UGGT1UDP-glucose glycoprotein glucosyltransferase 12.341.78
UGT2A3UDP glucuronosyltransferase 2 family, polypeptide A12.473.25
B4GALT1UDP-Gal: betaGlcNAc beta 1, 4-galactosyltransferase, polypeptide 12.752.72
B3GNT5UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 53.193.12
UGT8UDP-galactose ceramide galactosyltransferase3.202.94
UGCGUDP-glucose ceramide glucosyltransferase3.283.22
GALNT11UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 113.412.37
B3GNT7UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 74.304.49
B3GAT1beta-1, 3-glucuronyltransferase 1 (glucuronosyltransferase P)4.802.61
GALNT6UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 65.386.71
GALNT12UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 125.834.02
UGGT2UDP-glucose glycoprotein glucosyltransferase 26.386.07
GALNT10UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 107.236.18
B3GALT6UDP-Gal: betaGal beta 1, 3-galactosyltransferase polypeptide 610.2112.24
B3GALTLbeta 1, 3-galactosyltransferase-like10.419.65
GALNTL1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1614.7412.28
GALNT1UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 131.0237.33
GALNTL6polypeptide N-acetylgalactosaminyltransferase-like 638.4130.19
GALNT13UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 1339.0636.56
B3GNT9UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase 953.9846.67
B3GNTL2UDP-GlcNAc: betaGal beta-1, 3-N-acetylglucosaminyltransferase-like 267.86143.99
GALNT14UDP-N-acetyl-alpha-d-galactosamine: polypeptide N-acetylgalactosaminyltransferase 14115.30111.64

Red color indicates significantly (p ≤ .05) up-regulated genes, green color indicates significantly (p ≤ .05) down-regulated genes, yellow color indicates genes that did not significantly change their expression. Numbers in columns DEN and NDELA represent the fold change (negative for down-regulation). N/A, not quantified in all four replicas of the condition.

Among phase II genes, B3GALT2, B3GNT5, B3GNTL1, B4GALT5, GALE, GALNTL4 genes were up-regulated (with exception of GALE, which was down-regulated) by NDELA, and not significantly changed in the group that received DEN (Table 3). Additionally, NDELA up-regulated METTL6, NDST1, GSTCD genes, while DEN did not. DEN and NDELA inhibited over 50% of genes responsible for methylation (up to 62%), sulfation (up to 67%), glutathione conjugation (over 79%), and acetylation (100%). In contrast, 60% and 71% of genes involved in glucuronidation, a major detoxication pathway for nitrosamines, were induced by DEN and NDELA, respectively (Table 3).

IPA molecular network analysis also revealed only minor differences between metabolism of DEN and NDELA by embryo-chicken fetal liver (Figs. 4 and 5). The networks altered by DEN and NDELA include genes responsible for oxidation, mainly cytochromes from subfamily B, genes involved in reduction, as well as phase II glutathione conjugation and glucuronidation. Expression of the majority of the genes in the network was inhibited by the nitrosamines (Figs. 4 and 5).

Figure 4.

Molecular network interactions of metabolic genes regulated by diethylnitrosamine (DEN) in chicken fetal liver. The IPA database was used to determine and visualize molecular pathways enrichment by the significantly deregulated metabolic genes. Red indicates up-regulated genes. Green indicates down-regulated genes. Note that most genes in the network are inhibited by 2 mg/egg of DEN.

Figure 5.

Molecular network interactions of metabolic genes regulated by N-nitrosodiethanolamine (NDELA) in chicken fetal liver. The IPA database was used to determine and visualize molecular pathways enrichment by the significantly deregulated metabolic genes. Red indicates up-regulated genes. Green indicates down-regulated genes. Note that most genes in the network are inhibited by 4 mg/egg of NDELA.

DISCUSSION

In the present study, we have demonstrated that chicken embryo-fetal liver, under the conditions of the CEGA, expresses a wide variety (463) of genes involved in xenobiotic biotransformation. Liver was selected for analyses, since it is the primary organ utilized in CEGA, due to its high metabolic abilities, which in avian fetuses begin to develop on day 5 or even earlier (Clegg, 1964; Hamilton et al., 1983). Such early metabolic activity is due to early differentiation of avian liver, since the development of the avian fetus, in contrast to mammals, is autonomous (Sinclair and Sinclair, 1993). A notable aspect of the study is that influences of many other environmental factors is precluded in CEGA, and thus the effects observed in the model are attributable only to the tested chemicals.

The expression of genes encoding for enzymes involved in phase I and II chemical biotransformation was affected by substrates for the enzymes, two dialkylnitrosamines, DEN and NDELA. These observations are consistent with previous reports of activity of metabolic enzymes in avian liver (Hamilton et al., 1983; Ignarro and Shideman, 1968; Jackson et al., 1986; Perrone et al., 2004; Rifkind et al., 1979, 1994; Sinclair and Sinclair, 1993; Wolf and Luepke, 1997), and the reports that their activity is modulated by the enzyme inducer phenobarbital and other xenobiotics, eg, 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD), 3-methylcholanthrene, and ethanol (Perrone et al., 2004; Rifkind et al., 1979, 1994; Sinclair et al., 1989; Sinclair and Sinclair, 1993). Our findings confirm and extend knowledge on the metabolic competency of avian embryo-fetal liver.

Previous testing of DEN and NDELA in CEGA (Table 1) revealed that chicken fetal liver was capable of bioactivation, evidenced by DNA damage and teratogenic effects produced by DEN in the assay, as well as to differentiate genotoxic and nongenotoxic chemicals, despite their structural similarities (Williams et al., 2014). The analysis of gene expression modulations induced by the two nitrosamines contributes to clarification of the mode of action of these chemicals in CEGA. The tested total dose for each compound was the highest dose previously tested in CEGA, which was known for DEN, to produce effects on both molecular and phenotypic levels, in contrast to NDELA, but not to significantly affect viability of fetuses (Iatropoulos et al., 2017; Williams et al., 2014). Our analyses allows for phenotypic anchoring of chemical-induced gene expression changes with genotoxicity and morphological responses.

Mapping of selected metabolic genes onto IPA-established pathways of xenobiotic metabolism regulation (Supplementary Figure 1) revealed a number of genes present in chicken embryo-fetal livers with orthologs in other organisms. DEN and NDELA exposure in CEGA enriched several pathways consistent with binding and activation of several nuclear receptors: aryl hydrocarbon receptor (AHR), constitutive androstane receptor (CAR), and pregnane X receptor (RXR) (Supplementary Figure 1).

The effects of DEN on gene expression levels overlapped with that of NDELA for the majority of selected genes (Figure 2), which would be expected, since the compounds possess similarities in chemical structures as well as in pathways of biotransformation (Figure 1). Nevertheless, some differences were present, especially in the expression of genes responsible for oxidation and glucuronidation of nitrosamines. This might partially explain the difference in the genotoxic potential of DEN and NDELA in CEGA.

For many xenobiotics, including nitrosamines, biotransformation to a reactive moiety results from oxidation reactions catalyzed by cytochromes. In avian species, many forms of cytochrome P450 are well characterized (Lorr and Bloom, 1987; Sinclair and Sinclair, 1993). The induction of mixed-function oxidase system in avian embryo-fetus has been recorded as early as 3 days of development, with levels of activity being comparable with those reported for adult chicken and other species and thus, considered sufficient for metabolic activation of pro-carcinogens (Hamilton et al., 1983). Moreover, the activity of mixed function oxidases was reported not to depend significantly on the sex of the chicken (Rifkind et al., 1979). Consistently with other species, chicken possesses two genes that belong to CYP1A subfamily (CYP1A4 and CYP1A5) homologous to mammalian CYP1A1 and CYP1A2, which were reported to have overlapping but distinctly different functions (Gilday et al., 1996; Goldstone and Stegeman, 2006; Yang et al., 2013). Other isoforms in avian CYP1-3 families were also identified (Watanabe et al., 2013). Consistent with reports in the literature, exposure to DEN and NDELA significantly up-regulated expression of CYP2C23a which is induced by chicken xenobiotic receptor (CXR) activator, phenobarbital (Watanabe et al., 2013). High expression levels of CYP2J24P, CYP27C1, CYBRD1, and CYP21A2 (Table 2) indicate their importance in metabolism of nitrosamines in chickens. In humans only one CYP2J is present, while in avian species multiple genes of this subfamily were identified (Watanabe et al., 2013). DEN and NDELA strongly down-regulated the expression of cytochromes from B subfamily, ie, CYTB, CYB5A, and CYB5R2, genes also involved in endobiotic metabolism. Such strong inhibition of gene expression could be associated with the depletion of enzymes due to high doses of DEN and NDELA tested, or possibly these enzymes are not utilized in the metabolism of nitrosamines by chicken fetal liver.

Genes from CYP2C subfamily were also modified by DEN and NDELA exposure in CEGA (Table 2). These genes, formerly called CYP2H (Watanabe et al., 2013), encode for enzyme highly inducible by phenobarbital and other xenobiotics (Sinclair et al., 1990).

DEN did not significantly modify the expression of 3 cytochrome genes: CYB5D2, CYP1A5, as CYP2AB4 (gene found only in avian species) (Table 2). It is possible that this difference contributes to a difference in metabolic activation of DEN and NDELA by chicken fetal liver. It is also possible that since these genes are not regulated by DEN, the activity of cytochromes, which are involved in detoxication of DEN by denitrosation, is inhibited.

Published data suggest the importance of CYP2E1 in biotransformation of NDELA via α-hydroxylation pathway, producing an α-hydroxy metabolite which exhibits high levels of cytotoxicity (IARC, 2000; Loeppky, 1999). The avian liver does not possess CYP2E genes (Watanabe et al., 2013), which possibly results in the lack of toxicity of NDELA in CEGA (Iatropoulos et al., 2017; Williams et al., 2014). This correlates with absence of genotoxicity of NDELA in vivo, due to predominant metabolism via β-oxidation (Lijinsky, 1987).

Avian and mammalian sulfotransferases (SULT) have been determined to be closely related structurally and functionally (Wilson et al., 2004). In a study conducted by Sterzel and Eisenbrand (1986), inhibition of SULT was shown to abolish DNA single strand breaks produced by NDELA in rat liver. In the current study, the majority of genes controlling SULT activity were inhibited by DEN and NDELA. Consistent with the findings of Sterzel and Eisenbrand in rats, NDELA did not produce DNA strand breaks in chicken fetal livers (Williams et al., 2014), which could be related to inhibition of SULTs. DEN did produce DNA strand break in CEGA, suggesting that SULT inhibition might not be sufficient to abolish its genotoxicity.

Genes encoding for ALD, another important enzyme in metabolism of nitrosamines (Loeppky, 1999) (Figure 1), were down-regulated by exposure to DEN and NDELA (Table 2), which could again indicate their depletion by high doses of xenobiotics. Meanwhile several aldehyde dehydrogenase (ALDH) genes from family 1 and aldehyde oxidase genes, AOX1, ALDH1A3, ALDH1B1, and ALDH1A2 were significantly induced by exposure to DEN and NDELA. Previous reports also describe the increase of ALDH in rats with liver tumors produced by DEN and described that over half of DEN-produced hepatocellular carcinomas expressed tumor-associated ALDH phenotype (Canuto et al., 1993; Lindahl and Evces, 1987; Wischusen et al., 1983). While changes in ALDH activity in rodents are expressed in late stages of hepatocarcinogenesis, changes in CEGA were observed within 3 days of dosing. Thus, it is possible that induction of ALDH contributes to genotoxicity exhibited by DEN in CEGA. However, no major differences in the expression of ALDH genes were noticed between DEN- and NDELA-dosed eggs making it difficult to account for the role of these genes in genotoxicity of DEN.

The major difference between activity of xenobiotic-related genes in chicken fetal livers after dosing with DEN or NDELA were found in the group of genes that code for UDP glucuronyl transferase (UGT) activity (Table 3). It was reported that nitrosamines are conjugated in rat hepatocytes by UDP UGT, and the extent of glucuronidation depends on the lipophilicity of these chemicals (Wiench et al. 1992). Glucuronidation conjugates of nitrosamines are excreted in urine in laboratory animals and humans and are believed to be detoxication products (Hecht, 1997). In the current study, over 70% of genes encoding for UGT activity were up-regulated by NDELA, which possibly enhanced its detoxication and elimination, confirmed by negative results for its genotoxicity testing in CEGA previously. Meanwhile, DEN-dosed groups had fewer up-regulated glucuronidation genes (Table 3), which probably contributes to its genotoxicity due to lower rates of conjugation and elimination of the compound compared with NDELA.

While glutathione S-transferase (GST) levels were shown to increase in the livers of rats in response to DEN exposure (Canuto et al., 1993; Marinho et al., 1997), and preneoplastic foci produced by DEN in rat liver are positive for placental GST (Hosokawa et al., 1989; Satoh and Hatayama, 2002). In contrast, in CEGA the expression of genes coding for GST activities were mostly down-regulated (Table 3), possibly due to saturation of the pathway by the high dose of nitrosamines. Marked decrease of glutathione transferase activities was previously described after exposure to peroxisome proliferators, eg, nafenopin, clofibrate, due to binding to the enzyme subunit (Furukawa et al., 1985).

The pathway analysis in IPA revealed a network of genes that encode for metabolic enzymes that are known to play an important role in oxidation/hydroxylation of DEN and NDELA in vivo, specifically cytochromes, and ALD (Figs. 1, 4, and 5), as well as enzymes crucial for detoxication of nitrosamines, GST, and UGT. This further confirms similarities between xenobiotic metabolism in ovo and in vivo.

In summary, gene expression profiling in chicken fetal liver confirmed that this organ has an extensive metabolic capacity, which mimics in vivo systems. The majority of genes were deregulated in a similar fashion by DEN and NDELA, indicating similarity in the metabolism of N-nitrosamines in CEGA. Difference in expression of cytochrome and glucuronidation genes could contribute to differences in the effects of DEN and NDELA in CEGA. Thus, the reported sensitivity of the CEGA to a wide variety of genotoxic carcinogens known to require bioactivation is supported by the documented expression of genes for the enzymes involved. The findings strengthen the hypothesis that in ovo models are attractive alternatives to assess a variety of critical endpoints of chemical carcinogenesis.

SUPPLEMENTARY DATA

Supplementary data are available at Toxicological Sciences online.

FUNDING

This work was supported by Boehringer Ingelheim Pharma GmbH & Co.

REFERENCES

Animals (Scientific Procedures) Act 1986 Amendment Regulations
. (
2012
). Published online: https://www.legislation.gov.uk/ukpga/1986/14/contents/enacted, last accessed January 25, 2018.

Arcos
J. C.
,
Woo
Y. T.
,
Argus
M. F.
(
1982
). Carcinogenic cross-linking agents and alkyl donors. In
Chemical Induction of Cancer. Structural Bases and Biological Mechanisms
,
Arcos
J. C.
,
Woo
Y. T.
,
Argus
M. F.
, Eds. Vol.
IIIA
, pp.
169
170
.
Academic Press
.
New York, NY
.

Boardman
P. E.
,
Sanz-Ezquerro
J.
,
Overton
I. M.
,
Burt
D. W.
,
Bosch
E.
,
Fong
W. T.
,
Tickle
C.
,
Brown
W. R.
,
Wilson
S. A.
,
Hubbard
S. J.
(
2002
).
A comprehensive collection of chicken cDNAs
.
Curr. Biol
.
12
,
1965
1969
.

Bonfanti
M.
,
Magagnotti
C.
,
Fanelli
R.
,
Airoldi
L.
(
1987
).
Beta-oxidation of N-nitrosodiethanolamine in different animal species in vitro and in vivo
.
IARC Sci. Publ
.
84
,
91
93
.

Canuto
R. A.
,
Muzio
G.
,
Maggiora
M.
,
Biocca
M. E.
,
Dianzani
M. U.
(
1993
).
Glutathione-S-transferase, alcohol dehydrogenase and aldehyde reductase activities during diethylnitrosamine-carcinogenesis in rat liver
.
Cancer. Lett
.
68
,
177
183
.

Clegg
D. J.
(
1964
).
The hen egg in toxicity and teratogenicity studies
.
Food Cosmet. Toxicol
.
2
,
717
727
.

Furukawa
K.
,
Numoto
S.
,
Furuya
K.
,
Furukawa
N. T.
,
Williams
G. M.
(
1985
).
Effects of the hepatocarcinogen nafenopin, a peroxisome proliferator, on the activities of rat liver glutathione-requiring enzymes and catalase in comparison to the action of phenobarbital
.
Cancer Res
.
45
, 5011–5009.

Gilday
D.
,
Gannon
M.
,
Yutzey
K.
,
Bader
D.
,
Rifkind
A. B.
(
1996
).
Molecular cloning and expression of two novel avian cytochrome P450 1A enzymes induced by 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin
.
J. Biol. Chem
.
271
,
33054
33059
.

Golbar
H. M.
,
Izawa
T.
,
Murai
F.
,
Kuwamura
M.
,
Yamate
J.
(
2012
).
Immunohistochemical analyses of the kinetics and distribution of macrophages, hepatic stellate cells and bile duct epithelia in the developing rat liver
.
Exp. Toxicol. Pathol
.
64
,
1
8
.

Goldstone
H. M. H.
,
Stegeman
J. J.
(
2006
).
A revised evolutionary history of the CYP1A subfamily: gene duplication, gene conversion, and positive selection
.
J. Mol. Evol
.
62
,
708
717
.

Hamilton
J. W.
,
Denison
M. S.
,
Bloom
S. E.
(
1983
).
Development of basal and induced aryl hydrocarbon (benzo[a]pyrene) hydroxylase activity in the chicken embryo in ovo
.
Proc. Natl. Acad. Sci. U.S.A
.
80
,
3372
3376
.

Hecht
S. S.
(
1997
).
Approaches to cancer prevention based on an understanding of N-nitrosamine carcinogenesis
.
Proc. Soc. Exp. Biol. Med
.
216
,
181
191
.

Hosokawa
S.
,
Tatematsu
M.
,
Aoki
T.
,
Nakanowatari
J.
,
Igarashi
T.
,
Ito
N.
(
1989
).
Modulation of diethylnitrosamine-initiated placental glutathione S-transferase positive preneoplastic and neoplastic lesions by clofibrate, a hepatic peroxisome proliferator
.
Carcinogenesis
10
,
2237
2241
.

Hughes
A. F. W.
(
1953
).
The growth of embryonic neurites. A study of cultures of chick neural tissues
.
J. Anat
.
87
,
150
162
.

Iacobas
D. A.
,
Iacobas
S.
,
Spray
D. C.
(
2007
).
Connexin43 and the brain transcriptome of the newborn mice
.
Genomics
89
,
113
123
.

Iacobas
D. A.
,
Tuli
N.
,
Iacobas
S.
,
Rasamny
J. K.
,
Moscatello
A.
,
Geliebter
J.
,
Tiwari
R. M.
(
2018
).
Gene master regulators of papillary and anaplastic thyroid cancer phenotypes
.
Oncotarget
9
,
2410
2424
.

Iatropoulos
M. J.
,
Kobets
T.
,
Duan
J. D.
,
Brunnemann
K. D.
,
Vock
E.
,
Deschl
U.
,
Williams
G. M.
(
2017
).
Chicken egg fetal liver DNA and histopathologic effects of structurally diverse carcinogens and non-carcinogens
.
Exp. Toxicol. Pathol
.
69
,
533
546
.

Ignarro
L. J.
,
Shideman
F. E.
(
1968
).
Catechol-O-methyl transferase and monoamine oxidase activities in the heart and liver of the embryonic and developing chick
.
J. Pharmacol. Exp. Ther
.
159
,
29
37
.

International Agency for Research on Cancer (IARC)
. (
1978
). Some N-nitroso compounds. In:
IARC Monographs on the Evaluation of the Carcinogenic Risk of Chemicals to Humans
, Vol.
17
, pp.
77
124
.
IARC Press
,
Lyon, France
.

International Agency for Research on Cancer (IARC)
. (
2000
). Some industrial chemicals. N-Nitrosodiethanolamine. In:
IARC Monographs on the Evaluation of Carcinogenic Risks to Humans
, Vol.
77
, pp.
403
438
.
IARC Working Group on the Evaluation of Carcinogenic Risks to Humans
,
Lyon, France
.

Jackson
M. R.
,
Kennedy
S. M.
,
Lown
G.
,
Burchell
B.
(
1986
).
Induction of UDP-glucuronyl transferase mRNA in embryonic chick livers by phenobarbital
.
Biochem. Pharmacol
.
35
,
1191
1198
.

Kobets
T.
,
Duan
J. D.
,
Brunnemann
K. D.
,
Etter
S.
,
Smith
B.
,
Williams
G. M.
(
2016
).
Structure-activity relationships for DNA damage by alkenylbenzenes in Turkey egg fetal liver
.
Toxicol. Sci
.
150
,
301
311
.

Kobets
T.
,
Duan
J. D.
,
Brunnemann
K. D.
,
Iatropoulos
M. J.
,
Etter
S.
,
Hickey
C.
,
Smith
B.
,
Williams
G. M.
(
2018
).
In ovo testing of flavor and fragrance materials in Turkey Egg Genotoxicity Assay (TEGA), comparison of results to in vitro and in vivo data
.
Food Chem. Toxicol
.
115
,
228
243
.

Krämer
A.
,
Green
J.
,
Pollard
J.
Jr
,
Tugendreich
S.
(
2014
).
Causal analysis approaches in ingenuity pathway analysis
.
Bioinformatics
30
,
523
530
.

Lee
P. R.
,
Cohen
J. E.
,
Iacobas
D. A.
,
Iacobas
S.
,
Fields
R. D.
(
2017
).
Gene networks activated by specific patterns of action potentials in dorsal root ganglia neurons
.
Sci. Rep
.
7
,
43765.

Li
X.
,
Chiang
H. I.
,
Zhu
J.
,
Dowd
S. E.
,
Zhou
H.
(
2008
).
Characterization of a newly developed chicken 44K Agilent microarray
.
BMC Genomics
9
,
60.

Lijinsky
W.
(
1987
).
Carcinogenicity and mutagenicity of N-nitroso compounds
.
Mol. Toxicol
.
1
,
107
119
.

Lindahl
R.
,
Evces
S.
(
1987
).
Changes in aldehyde dehydrogenase activity during diethylnitrosamine-initiated rat hepatocarcinogenesis
.
Carcinogenesis
8
,
785
790
.

Loeppky
R. N.
(
1999
).
The mechanism of bioactivation of N-nitrosodiethanolamine
.
Drug Metab. Rev
.
31
,
175
193
.

Lorr
N. A.
,
Bloom
S. E.
(
1987
).
Ontogeny of the chicken cytochrome P-450 enzyme system. Expression and development of responsiveness to phenobarbital induction
.
Biochem. Pharmacol
.
36
,
3059
3067
.

Loveless
A.
(
1969
).
Possible relevance of O-6 alkylation of deoxyguanosine to the mutagenicity and carcinogenicity of nitrosamines and nitrosamides
.
Nature
223
,
206
207
.

Magee
P. N.
(
1971
).
Toxicity of nitrosamines: their possible human health hazards
.
Food Cosmet. Toxicol
.
9
,
207
218
.

Marinho
H. S.
,
Baptista
M.
,
Pinto
R. E.
(
1997
).
Glutathione metabolism in hepatomous liver of rats treated with diethylnitrosamine
.
Biochim. Biophys. Acta
1360
,
157
168
.

Nie
H.
,
Crooijmans
R. P.
,
Lammers
A.
,
van Schothorst
E. M.
,
Keijer
J.
,
Neerincx
P. B.
,
Leunissen
J. A.
,
Megens
H. J.
,
Groenen
M. A.
(
2010
).
Gene expression in chicken reveals correlation with structural genomic features and conserved patterns of transcription in the terrestrial vertebrates
.
PLoS One
5
,
e11990.

Ostling
O.
,
Johanson
K. J.
(
1984
).
Microelectrophoretic study of radiation-induced DNA damages in individual mammalian cells
.
Biochem. Biophys. Res. Commun
.
123
,
291
298
.

Perrone
C. E.
,
Ahr
H. J.
,
Duan
J. D.
,
Jeffrey
A. M.
,
Schmidt
U.
,
Williams
G. M.
,
Enzmann
H. G.
(
2004
).
Embryonic turkey liver: activities of biotransformation enzymes and activation of DNA-reactive carcinogens
.
Arch Toxicol
78
,
589
598
.

Phillips
D. H.
,
Arlt
V. M.
(
2014
).
32P-postlabeling analysis of DNA adducts
.
Methods Mol. Biol
.
1105
,
127
138
.

Randerath
K.
,
Reddy
M. V.
,
Gupta
R. C.
(
1981
).
32P-labeling test for DNA damage
.
Proc. Natl. Acad. Sci. U.S.A
.
78
,
6126
6129
.

Rifkind
A. B.
,
Kanetoshi
A.
,
Orlinick
J.
,
Capdevila
J. H.
,
Lee
C.
(
1994
).
Purification and biochemical characterization of two major cytochrome P-450 isoforms induced by 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin in chick embryo liver
.
J. Biol. Chem
.
269
,
3387
3396
.

Rifkind
A. B.
,
Troeger
M.
,
Petschke
T.
(
1979
).
Equality of the rates of mixed function oxidation in livers of male and female chick embryos
.
Biochem. Pharmacol
.
28
,
1681
1683
.

Romanoff
A.
(
1960
).
The Avian Embryo, Structural and Functional Development
.
McMillan
,
New York
.

Ross
M. H.
,
Pawlina
W.
(
2006
).
Histology a Text and Atlas: With Correlated Cell and Molecular Biology
, 5th ed., pp.
576
593
.
Lippincott, Williams & Wilkins Publishers
,
Philadelphia, PA
.

Satoh
K.
,
Hatayama
I.
(
2002
).
Anomalous elevation of glutathione S-transferase P-form (GST-P) in the elementary process of epigenetic initiation of chemical hepatocarcinogenesis in rats
.
Carcinogenesis
23
,
1193
1198
.

Sinclair
J. F.
,
Sinclair
P. R.
(
1993
). Avian cytochrome P450, In
Cytochrome P450
(
Schenkman
J. B.
,
Greim
H.
, Eds.), pp.
259
277
.
Springer
,
Berlin, Heidelberg
.

Sinclair
J. F.
,
Wood
S.
,
Lambrecht
L.
,
Gorman
N.
,
Mende-Mueller
L.
,
Smith
L.
,
Hunt
J.
,
Sinclair
P.
(
1990
).
Isolation of four forms of acetone-induced cytochrome P-450 in chicken liver by h.p.l.c. and their enzymic characterization
.
Biochem. J
.
269
,
85
91
.

Sinclair
P. R.
,
Frezza
J.
,
Sinclair
J. F.
,
Bement
W. J.
,
Haugen
S.
,
Healey
J.
,
Bonkovsky
H.
(
1989
).
Immunochemical detection of different isoenzymes of cytochrome P-450 induced in chick hepatocyte cultures
.
Biochem. J
.
258
,
237
245
.

Singh
N. P.
,
McCoy
M. T.
,
Tice
R. R.
,
Schneider
E. L.
(
1988
).
A simple technique for quantitation of low levels of DNA damage in individual cells
.
Exp. Cell Res
.
175
,
184
191
.

Sterzel
W.
,
Eisenbrand
G.
(
1986
).
N-nitrosodiethanolamine is activated in the rat to an ultimate genotoxic metabolite by sulfotransferase
.
J. Cancer Res. Clin. Oncol
.
111
,
20
24
.

Swann
P. F.
,
Magee
P. N.
(
1968
).
Nitrosamine-induced carcinogenesis. The alklylation of nucleic acids of the rat by N-methyl-N-nitrosourea, dimethylnitrosamine, dimethyl sulphate and methyl methanesulphonate
.
Biochem. J
.
110
,
39
47
.

Tice
R. R.
,
Agurell
E.
,
Anderson
D.
,
Burlinson
B.
,
Hartmann
A.
,
Kobayashi
H.
,
Miyamae
Y.
,
Rojas
E.
,
Ryu
J. C.
,
Sasaki
Y. F.
(
2000
).
Single cell gel/comet assay: guidelines for in vitro and in vivo genetic toxicology testing
.
Environ. Mol. Mutagen
.
35
,
206
221
.

Velíšková
J.
,
Iacobas
D. A.
,
Iacobas
S.
,
Sidyelyeva
G.
,
Chachua
T.
,
Velíšek
L.
(
2015
).
Estradiol regulates neuropeptide Y release and the gene coupling with GABAergic and glutamatergic synapse in adult female rat dentate gyrus
.
J. Neuroend
.
27
,
911
920
.

Watanabe
K. P.
,
Kawai
Y. K.
,
Ikenaka
Y.
,
Kawata
M.
,
Ikushiro
S.
,
Sakaki
T.
,
Ishizuka
M.
(
2013
).
Avian cytochrome P450 (CYP) 1-3 family genes: isoforms, evolutionary relationships, and mRNA expression in chicken liver
.
PLoS One
8
,
e75689.

Wiench
K.
,
Frei
E.
,
Schroth
P.
,
Wiessler
M.
(
1992
).
1-C-glucuronidation of N-nitrosodiethylamine and N-nitrosomethyl-n-pentylamine in vivo and in primary hepatocytes from rats pretreated with inducers
.
Carcinogenesis
13
,
867
872
.

Williams
G. M.
,
Brunnemann
K. D.
,
Iatropoulos
M. J.
,
Smart
D. J.
,
Enzmann
H. G.
(
2011
).
Production of liver preneoplasia and gallbladder agenesis in turkey fetuses administered diethylnitrosamine
.
Arch. Toxicol
.
85
,
681
687
.

Williams
G. M.
,
Duan
J. D.
,
Brunnemann
K. D.
,
Iatropoulos
M. J.
,
Vock
E.
,
Deschl
U.
(
2014
).
Chicken fetal liver DNA damage and adduct formation by activation-dependent DNA-reactive carcinogens and related compounds of several structural classes
.
Toxicol. Sci
.
141
,
18
28
.

Williams
J. G.
,
Deschl
U.
,
Williams
G. M.
(
2011
).
DNA damage in fetal liver cells of turkey and chicken eggs dosed with aflatoxin B1
.
Arch. Toxicol
.
85
,
1167
1172
.

Wilson
L. A.
,
Reyns
G. E.
,
Darras
V. M.
,
Coughtrie
M. W.
(
2004
).
cDNA cloning, functional expression, and characterization of chicken sulfotransferases belonging to the SULT1B and SULT1C families
.
Arch. Biochem. Biophys
.
428
,
64
72
.

Wischusen
S. M.
,
Evces
S.
,
Lindahl
R.
(
1983
).
Changes in aldehyde dehydrogenase activity during diethylnitrosamine- or 2-acetylaminofluorene-initiated rat hepatocarcinogenesis
.
Cancer Res
.
43
,
1710
1715
.

Wolf
T.
,
Luepke
N. P.
(
1997
).
Formation of micronuclei in incubated hen's eggs as a measure of genotoxicity
.
Mutat. Res
.
394
,
163
175
.

Wolf
T.
,
Niehaus-Rolf
C.
,
Luepke
N. P.
(
2003
).
Investigating genotoxic and hematotoxic effects of N-nitrosodimethylamine, N-nitrosodiethylamine and N-nitrosodiethanolamine in the hen's egg-micronucleus test (HET-MN)
.
Food Chem. Toxicol
.
41
,
561
573
.

Yang
J.
,
An
J.
,
Li
M.
,
Hou
X.
,
Qiu
X.
(
2013
).
Characterization of chicken cytochrome P450 1A4 and 1A5: inter-paralog comparisons of substrate preference and inhibitor selectivity
.
Comp. Biochem. Physiol. C Toxicol. Pharmacol
.
157
,
337
343
.

Yokouchi
Y.
(
2005
).
Establishment of a chick embryo model for analyzing liver development and a search for candidate genes
.
Dev. Growth Differ
.
47
,
357
366
.

This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model (https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model)

Supplementary data

Comments

0 Comments
Submit a comment
You have entered an invalid code
Thank you for submitting a comment on this article. Your comment will be reviewed and published at the journal's discretion. Please check for further notifications by email.