Table 1.
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Datasets for ResFinder 4.0 validation

SpeciesIsolates (n)Observations (n)SourceOriginCountryReference
E. coli951520animal, foodsurveillanceDKHendriksen et al.43
E. coli99890animal, foodsurveillanceUKDuggett et al.44, AbuOun et al.48
E. colia3902559human, animalclinical, surveillanceDEThis study
Salmonella enterica10817489animal, foodsurveillanceUSAMcDermott et al.23
C. jejuni2391382animal, foodsurveillanceFIN, FR, DE, LU, PL, PTLeekitcharoenphon et al.45
E. faecium50363humanclinicalDEthis study
E. faeciumb56159humanclinicalBEthis study
E. faecalis50235human and animalclinical, surveillanceDENeumann et al.46, Bender et al.47
S. aureusb63504humanclinical, surveillanceBEthis study
S. aureusc100598humanclinical, surveillanceDKthis study
SpeciesIsolates (n)Observations (n)SourceOriginCountryReference
E. coli951520animal, foodsurveillanceDKHendriksen et al.43
E. coli99890animal, foodsurveillanceUKDuggett et al.44, AbuOun et al.48
E. colia3902559human, animalclinical, surveillanceDEThis study
Salmonella enterica10817489animal, foodsurveillanceUSAMcDermott et al.23
C. jejuni2391382animal, foodsurveillanceFIN, FR, DE, LU, PL, PTLeekitcharoenphon et al.45
E. faecium50363humanclinicalDEthis study
E. faeciumb56159humanclinicalBEthis study
E. faecalis50235human and animalclinical, surveillanceDENeumann et al.46, Bender et al.47
S. aureusb63504humanclinical, surveillanceBEthis study
S. aureusc100598humanclinical, surveillanceDKthis study

If not otherwise specified, phenotypic AST results were obtained by BMD.

DK, Denmark; DE, Germany; FIN, Finland; FR, France; LU, Luxembourg; PL, Poland; PT, Portugal; BE, Belgium.

a

Dataset for blind test of ResFinder 4.0 performance. Cefepime, chloramphenicol, ertapenem and nalidixic acid susceptibility testing were performed by Etest in a subset of isolates. All remaining AST were performed by BMD.

b

Phenotypic AST results were obtained by Etest.

c

Phenotypic AST results were obtained by disc diffusion.

Table 1.
Open in new tab

Datasets for ResFinder 4.0 validation

SpeciesIsolates (n)Observations (n)SourceOriginCountryReference
E. coli951520animal, foodsurveillanceDKHendriksen et al.43
E. coli99890animal, foodsurveillanceUKDuggett et al.44, AbuOun et al.48
E. colia3902559human, animalclinical, surveillanceDEThis study
Salmonella enterica10817489animal, foodsurveillanceUSAMcDermott et al.23
C. jejuni2391382animal, foodsurveillanceFIN, FR, DE, LU, PL, PTLeekitcharoenphon et al.45
E. faecium50363humanclinicalDEthis study
E. faeciumb56159humanclinicalBEthis study
E. faecalis50235human and animalclinical, surveillanceDENeumann et al.46, Bender et al.47
S. aureusb63504humanclinical, surveillanceBEthis study
S. aureusc100598humanclinical, surveillanceDKthis study
SpeciesIsolates (n)Observations (n)SourceOriginCountryReference
E. coli951520animal, foodsurveillanceDKHendriksen et al.43
E. coli99890animal, foodsurveillanceUKDuggett et al.44, AbuOun et al.48
E. colia3902559human, animalclinical, surveillanceDEThis study
Salmonella enterica10817489animal, foodsurveillanceUSAMcDermott et al.23
C. jejuni2391382animal, foodsurveillanceFIN, FR, DE, LU, PL, PTLeekitcharoenphon et al.45
E. faecium50363humanclinicalDEthis study
E. faeciumb56159humanclinicalBEthis study
E. faecalis50235human and animalclinical, surveillanceDENeumann et al.46, Bender et al.47
S. aureusb63504humanclinical, surveillanceBEthis study
S. aureusc100598humanclinical, surveillanceDKthis study

If not otherwise specified, phenotypic AST results were obtained by BMD.

DK, Denmark; DE, Germany; FIN, Finland; FR, France; LU, Luxembourg; PL, Poland; PT, Portugal; BE, Belgium.

a

Dataset for blind test of ResFinder 4.0 performance. Cefepime, chloramphenicol, ertapenem and nalidixic acid susceptibility testing were performed by Etest in a subset of isolates. All remaining AST were performed by BMD.

b

Phenotypic AST results were obtained by Etest.

c

Phenotypic AST results were obtained by disc diffusion.

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