Table 1. Open in new tab Differential... | Oxford Academic

Table 1.

Open in new tab

Differential expression levels of sequence-specific DNA-binding transcription factor (GO: 0003700)

EST Q. suber accession no.^a	Fold change^b	Best TAIR BLASTX	q-value	Annotation
All_003894	0.117	AT3G58780	0.313	Transcription factor, MADS-box
All_001355	0.217	AT3G54810	0.254	Zinc finger, GATA-type
All_004297	0.269	AT1G46480	0.260	Homeobox
All_001662	0.705	AT2G22430	0.003	Helix–turn–helix motif, lambda-like repressor – HD-ZIP protein ATHB-6
bZIP transcription factor family
All_007028	0.182	AT1G75390	6.81e^–6	Basic-leucine zipper (bZIP) transcription factor
All_007036	0.227	AT4G34590	0.293	Basic-leucine zipper (bZIP) transcription factor
WRKY transcription factor family
All_016452	0.2	AT2G24570	0.312	DNA-binding WRKY
All_006373	0.243	AT1G29280	0.056	DNA-binding WRKY
All_007469	0.259	AT5G13080	0.006	DNA-binding WRKY
All_007674	0.361	AT5G13080	0.228	DNA-binding WRKY
All_005356	0.605	AT2G46130	2.22e^–7	DNA-binding WRKY
AP2/EREBP transcription factor family
All_005415	0.144	AT5G25190	1.12e^–9	Pathogenesis-related transcriptional factor/ERF
All_003976	0.147	AT1G19210	6.93e^–7	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001279	0.214	AT5G47230	3.25e^–5	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_002811	0.235	AT3G16770	2.53e^–27	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001371	0.296	AT4G37750	0.286	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001999	0.818	AT1G53910	0.265	Pathogenesis-related transcriptional factor/ERF, DNA-binding
CCAAT-binding transcription factor family
All_001545	1.909	AT1G72830	0.116	CCAAT-binding transcription factor, subunit B
All_002529	3.727	AT5G12840	0.046	CCAAT-binding transcription factor, subunit B
bHLH
All_001518	0.408	AT1G72210	0.152	Helix–loop–helix DNA-binding domain
All_006430	Only in BQC	AT2G40435	0.260	Helix–loop–helix DNA-binding
All_014772	0.058	XP_002303073.1 Populus	0.286	BHLH transcription factor
All_002644	6	AT5G65640	0.328	Helix–loop–helix DNA-binding domain
All_003550	3.88	AT1G29950	0.086	Helix–loop–helix DNA-binding domain
All_001285	3.187	AT4G37850	0.027	Helix–loop–helix DNA-binding domain

EST Q. suber accession no.^a	Fold change^b	Best TAIR BLASTX	q-value	Annotation
All_003894	0.117	AT3G58780	0.313	Transcription factor, MADS-box
All_001355	0.217	AT3G54810	0.254	Zinc finger, GATA-type
All_004297	0.269	AT1G46480	0.260	Homeobox
All_001662	0.705	AT2G22430	0.003	Helix–turn–helix motif, lambda-like repressor – HD-ZIP protein ATHB-6
bZIP transcription factor family
All_007028	0.182	AT1G75390	6.81e^–6	Basic-leucine zipper (bZIP) transcription factor
All_007036	0.227	AT4G34590	0.293	Basic-leucine zipper (bZIP) transcription factor
WRKY transcription factor family
All_016452	0.2	AT2G24570	0.312	DNA-binding WRKY
All_006373	0.243	AT1G29280	0.056	DNA-binding WRKY
All_007469	0.259	AT5G13080	0.006	DNA-binding WRKY
All_007674	0.361	AT5G13080	0.228	DNA-binding WRKY
All_005356	0.605	AT2G46130	2.22e^–7	DNA-binding WRKY
AP2/EREBP transcription factor family
All_005415	0.144	AT5G25190	1.12e^–9	Pathogenesis-related transcriptional factor/ERF
All_003976	0.147	AT1G19210	6.93e^–7	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001279	0.214	AT5G47230	3.25e^–5	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_002811	0.235	AT3G16770	2.53e^–27	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001371	0.296	AT4G37750	0.286	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001999	0.818	AT1G53910	0.265	Pathogenesis-related transcriptional factor/ERF, DNA-binding
CCAAT-binding transcription factor family
All_001545	1.909	AT1G72830	0.116	CCAAT-binding transcription factor, subunit B
All_002529	3.727	AT5G12840	0.046	CCAAT-binding transcription factor, subunit B
bHLH
All_001518	0.408	AT1G72210	0.152	Helix–loop–helix DNA-binding domain
All_006430	Only in BQC	AT2G40435	0.260	Helix–loop–helix DNA-binding
All_014772	0.058	XP_002303073.1 Populus	0.286	BHLH transcription factor
All_002644	6	AT5G65640	0.328	Helix–loop–helix DNA-binding domain
All_003550	3.88	AT1G29950	0.086	Helix–loop–helix DNA-binding domain
All_001285	3.187	AT4G37850	0.027	Helix–loop–helix DNA-binding domain

Values below one mean that the genes are more highly expressed in BQC.

^aQ. suber accession number refers to the accession number assigned after pyrosequencing.

^b Fold-change is expressed as the ratio of gene expression of GQC to BQC.

Table 1.

Open in new tab

Differential expression levels of sequence-specific DNA-binding transcription factor (GO: 0003700)

EST Q. suber accession no.^a	Fold change^b	Best TAIR BLASTX	q-value	Annotation
All_003894	0.117	AT3G58780	0.313	Transcription factor, MADS-box
All_001355	0.217	AT3G54810	0.254	Zinc finger, GATA-type
All_004297	0.269	AT1G46480	0.260	Homeobox
All_001662	0.705	AT2G22430	0.003	Helix–turn–helix motif, lambda-like repressor – HD-ZIP protein ATHB-6
bZIP transcription factor family
All_007028	0.182	AT1G75390	6.81e^–6	Basic-leucine zipper (bZIP) transcription factor
All_007036	0.227	AT4G34590	0.293	Basic-leucine zipper (bZIP) transcription factor
WRKY transcription factor family
All_016452	0.2	AT2G24570	0.312	DNA-binding WRKY
All_006373	0.243	AT1G29280	0.056	DNA-binding WRKY
All_007469	0.259	AT5G13080	0.006	DNA-binding WRKY
All_007674	0.361	AT5G13080	0.228	DNA-binding WRKY
All_005356	0.605	AT2G46130	2.22e^–7	DNA-binding WRKY
AP2/EREBP transcription factor family
All_005415	0.144	AT5G25190	1.12e^–9	Pathogenesis-related transcriptional factor/ERF
All_003976	0.147	AT1G19210	6.93e^–7	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001279	0.214	AT5G47230	3.25e^–5	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_002811	0.235	AT3G16770	2.53e^–27	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001371	0.296	AT4G37750	0.286	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001999	0.818	AT1G53910	0.265	Pathogenesis-related transcriptional factor/ERF, DNA-binding
CCAAT-binding transcription factor family
All_001545	1.909	AT1G72830	0.116	CCAAT-binding transcription factor, subunit B
All_002529	3.727	AT5G12840	0.046	CCAAT-binding transcription factor, subunit B
bHLH
All_001518	0.408	AT1G72210	0.152	Helix–loop–helix DNA-binding domain
All_006430	Only in BQC	AT2G40435	0.260	Helix–loop–helix DNA-binding
All_014772	0.058	XP_002303073.1 Populus	0.286	BHLH transcription factor
All_002644	6	AT5G65640	0.328	Helix–loop–helix DNA-binding domain
All_003550	3.88	AT1G29950	0.086	Helix–loop–helix DNA-binding domain
All_001285	3.187	AT4G37850	0.027	Helix–loop–helix DNA-binding domain

EST Q. suber accession no.^a	Fold change^b	Best TAIR BLASTX	q-value	Annotation
All_003894	0.117	AT3G58780	0.313	Transcription factor, MADS-box
All_001355	0.217	AT3G54810	0.254	Zinc finger, GATA-type
All_004297	0.269	AT1G46480	0.260	Homeobox
All_001662	0.705	AT2G22430	0.003	Helix–turn–helix motif, lambda-like repressor – HD-ZIP protein ATHB-6
bZIP transcription factor family
All_007028	0.182	AT1G75390	6.81e^–6	Basic-leucine zipper (bZIP) transcription factor
All_007036	0.227	AT4G34590	0.293	Basic-leucine zipper (bZIP) transcription factor
WRKY transcription factor family
All_016452	0.2	AT2G24570	0.312	DNA-binding WRKY
All_006373	0.243	AT1G29280	0.056	DNA-binding WRKY
All_007469	0.259	AT5G13080	0.006	DNA-binding WRKY
All_007674	0.361	AT5G13080	0.228	DNA-binding WRKY
All_005356	0.605	AT2G46130	2.22e^–7	DNA-binding WRKY
AP2/EREBP transcription factor family
All_005415	0.144	AT5G25190	1.12e^–9	Pathogenesis-related transcriptional factor/ERF
All_003976	0.147	AT1G19210	6.93e^–7	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001279	0.214	AT5G47230	3.25e^–5	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_002811	0.235	AT3G16770	2.53e^–27	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001371	0.296	AT4G37750	0.286	Pathogenesis-related transcriptional factor/ERF, DNA-binding
All_001999	0.818	AT1G53910	0.265	Pathogenesis-related transcriptional factor/ERF, DNA-binding
CCAAT-binding transcription factor family
All_001545	1.909	AT1G72830	0.116	CCAAT-binding transcription factor, subunit B
All_002529	3.727	AT5G12840	0.046	CCAAT-binding transcription factor, subunit B
bHLH
All_001518	0.408	AT1G72210	0.152	Helix–loop–helix DNA-binding domain
All_006430	Only in BQC	AT2G40435	0.260	Helix–loop–helix DNA-binding
All_014772	0.058	XP_002303073.1 Populus	0.286	BHLH transcription factor
All_002644	6	AT5G65640	0.328	Helix–loop–helix DNA-binding domain
All_003550	3.88	AT1G29950	0.086	Helix–loop–helix DNA-binding domain
All_001285	3.187	AT4G37850	0.027	Helix–loop–helix DNA-binding domain

Values below one mean that the genes are more highly expressed in BQC.

^aQ. suber accession number refers to the accession number assigned after pyrosequencing.

^b Fold-change is expressed as the ratio of gene expression of GQC to BQC.