Figure 1.
Phylogenetic tree displaying currently available taxonomic diversity of DPANN genomes. Tree was generated using the RP15 pipeline published previously in Zaremba-Niedzwiedzka et al. (2017) and is based on maximum-likelihood analyses in IQ-tree using the LG + C60 + F model of evolution. SH-values and bootstraps were calculated using a SH-like approximate likelihood ratio test (Guindon et al.2010) and ultrafast bootstrap support values (Minh et al.2013), respectively. Black and white circles indicate support values of 100/100 and 99.9–90/90–99.9, respectively. Scale bars indicate the average number of substitutions per site. The phylogeny represents bins available at NCBI before 23 March 2018 and indicates the genome size (for closed genomes), the bin completeness and contamination (for MAGs). The stars highlight genomes from DPANN members existing in co-cultures. Corresponding information for these genomic bins is available in Supplementary Table S1 (Supporting Information), the tree including taxa names is available as Supplementary Fig. S1 (Supporting Information) and the tree file is provided in Supplementary Data 1 (Supporting Information).